Miyakogusa Predicted Gene

Lj0g3v0146989.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146989.1 Non Chatacterized Hit- tr|D8S066|D8S066_SELML
Putative uncharacterized protein OS=Selaginella
moelle,34.74,5e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FROUNT
PROTEIN-RELATED,NULL; Nucleopor_Nup85,Nucleoporin
Nup85-l,gene.g11122.t1.1
         (197 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32910.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nuclear po...   177   6e-45

>AT4G32910.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nuclear pore
           complex protein, Nucleoporin Nup85-like
           (InterPro:IPR011502); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:15881364-15885210 FORWARD LENGTH=716
          Length = 716

 Score =  177 bits (448), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 107/251 (42%), Positives = 132/251 (52%), Gaps = 58/251 (23%)

Query: 1   MP--SDTVGNGVLVPFSGEGSDSVAVYPLNHGLSLPISRVAISWSRGNSLRVSLFAEPSA 58
           MP  S   G G LV FS +    V +YPL++GL  P+ R++ISW  GN+LRV++   P  
Sbjct: 1   MPGMSSESGGGELVLFSTKEKTPV-LYPLSYGLKSPVHRLSISWGCGNNLRVTVLRNPEL 59

Query: 59  TSPDSQASGAKVVEVKLSGEDPEISDSNWRRIAYGSVTPFALLQXXX---XXXXXXXXXX 115
              D    G KVV V+LSGED EISD  WRRIAYGSV+PFALLQ                
Sbjct: 60  RDDDDGEVGGKVVNVRLSGEDGEISDPQWRRIAYGSVSPFALLQSRRNSISSLSKMDMSS 119

Query: 116 XXYHVDWWEHVLEYSKDIASLLGG-----------PK----------------------- 141
             Y   WWE+V+EYS+DI SLL             P+                       
Sbjct: 120 SLYQTAWWEYVMEYSRDIKSLLSNTISLPAPLIEDPRSVIKNAEEPTSLKAAWELMELFY 179

Query: 142 ------------------DFDSLFTSTHETIHGKLVNFQKELVNIQVIEDDPRYWEVMSS 183
                             ++D L +S+H TI+ KL +FQKELV +Q IEDDPRYWEVM+S
Sbjct: 180 ADKTCLSWLPERLVDWLSEYDILLSSSHPTIYSKLQDFQKELVGLQAIEDDPRYWEVMAS 239

Query: 184 ALSVGWLDIVV 194
           ALSVGWL+IVV
Sbjct: 240 ALSVGWLEIVV 250