Miyakogusa Predicted Gene

Lj0g3v0146979.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146979.1 Non Chatacterized Hit- tr|I1MHT6|I1MHT6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56638 PE,86.77,0,Middle
domain of eukaryotic initiation facto,MIF4G-like, type 3; SUBFAMILY
NOT NAMED,NULL; NONSENSE-,NODE_45833_length_4484_cov_72.079170.path2.1
         (1208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39260.1 | Symbols:  | binding;RNA binding | chr2:16392288-16...   942   0.0  

>AT2G39260.1 | Symbols:  | binding;RNA binding |
            chr2:16392288-16399588 REVERSE LENGTH=1181
          Length = 1181

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/703 (65%), Positives = 536/703 (76%), Gaps = 44/703 (6%)

Query: 486  SLEGTNLDALLQRLPGCVSRDLIDQLTVGFCYLHSKSNRKKLVGALFSVPMTSLELLPYY 545
            SL+  N + LLQRLPGCVSRDLIDQLTV +CYL+SK+NRKKLV ALF+VP TSLELL YY
Sbjct: 461  SLDVANFERLLQRLPGCVSRDLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYY 520

Query: 546  SRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIKNIRFIGELCKFKIAPAG 605
            SRMVATL++CMKD+ S+L+QMLE+EFN L++KKDQMNIETKI+NIRFIGELCKFKI PAG
Sbjct: 521  SRMVATLASCMKDIPSMLVQMLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPAG 580

Query: 606  LVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDP 665
            LVFSCLKACLD+FTHHNIDVACNLLETCGRFLYRSPET++RM NML+ILMRLKNVKNLDP
Sbjct: 581  LVFSCLKACLDEFTHHNIDVACNLLETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDP 640

Query: 666  RHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSE 725
            R STLVENAYYLCKPPERSAR++KVRPPLHQY+RKLLFSDLDK +I +VL+QLRKLPWSE
Sbjct: 641  RQSTLVENAYYLCKPPERSARISKVRPPLHQYVRKLLFSDLDKDSIANVLKQLRKLPWSE 700

Query: 726  CEPYFLNCFMNVYEGNSGQIHLIASLAAGLSRYYDEFAVAIVDEVLEEIRIGLELNDYGM 785
            CE Y L CFM V++G  GQIHLIASL +GLSR++DEF VA+VDEVLEEIR+GLELN+YG 
Sbjct: 701  CEQYILKCFMKVHKGKYGQIHLIASLTSGLSRHHDEFVVAVVDEVLEEIRVGLELNEYGA 760

Query: 786  QQRRVAYMRFLGELYNYKHADSSVIFETLYLILVYGHGTPEQDVLDPPEDFFRIRLIITL 845
            QQ+R+A+MRFLGELYNY+H DSSVIFETLYL L+YGH T EQ+VLDPPEDFFR+R++I L
Sbjct: 761  QQKRLAHMRFLGELYNYEHVDSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRVRMVIIL 820

Query: 846  LETCGHYFDHGSSKRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFVDLRPNMVRYSSIX 905
            LETCGHYFD GSSK++LD+FLIHFQRYILSKG LPLD+EFDLQDLF +LRPNM RYS+I 
Sbjct: 821  LETCGHYFDRGSSKKRLDQFLIHFQRYILSKGHLPLDIEFDLQDLFANLRPNMTRYSTID 880

Query: 906  XXXXXXXXXXXHDRIVSADKASGEKQSE-KPPRRTTSSMVVGNGQSIDNGAEDNG----- 959
                        +   S DK S E+ S+ KP  +++S ++  NG+S      +NG     
Sbjct: 881  EVNAAILQLEEREHASSGDKVSIERHSDTKPSNKSSSDVISSNGKSTAKDIRENGEAHGE 940

Query: 960  -----------VQD----DVNDGEADSGSDVIXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1004
                       V+D    +++DG  + GS+                              
Sbjct: 941  ESDSDSGSGSVVRDGQNEELDDGNHERGSE----------------------SGDGDDYD 978

Query: 1005 XXXXXXXXXXXVHVRQKVTEVDPLEEASFDQELKAVLQESMEQRRLELRGRPTLNMMIPM 1064
                         VRQKV  VD  E+A FDQELKA+LQESMEQR+LELRGRP LNM IPM
Sbjct: 979  DGDGPGSDDDKFRVRQKVVTVDLEEQADFDQELKALLQESMEQRKLELRGRPALNMTIPM 1038

Query: 1065 NVFEGSAKDHHGRG-TGGESGDEALDEDTDGNKEVQVKVLVKRGNKQQTKQMYIPRNSSL 1123
            +VFEGS KDHH  G   GE+G+E LDE+    +EVQVKVLVKRGNKQQT+QM IP + +L
Sbjct: 1039 SVFEGSGKDHHHFGRVVGENGEEVLDEENGEQREVQVKVLVKRGNKQQTRQMLIPSDCAL 1098

Query: 1124 VQSTXXXXXXXXXXXXDIKRLVLEYNDREEEELNGLGTQPTNW 1166
            VQST            DIKRLVLEYN+R+EEE NGLGTQ  NW
Sbjct: 1099 VQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANGLGTQILNW 1141



 Score =  543 bits (1399), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/423 (67%), Positives = 338/423 (79%), Gaps = 9/423 (2%)

Query: 1   MDQHEDECRTGGESNSKQDDEEAVAHLEEIKKSIEAKIALRQSNLNPDRPDSGFLRTLDS 60
           MD  EDE  +      KQDDEEA+A LEEIKKSIEAK+ LRQ+NLNP+RPDS +LRTLDS
Sbjct: 1   MDHPEDESHS-----EKQDDEEALARLEEIKKSIEAKLTLRQNNLNPERPDSAYLRTLDS 55

Query: 61  SIKRNTAVIKKLKQINEELREALMDELRTVNMSKFVSEAVAAICDAKLRSSDIQAAVQIW 120
           SIKRNTAVIKKLKQINEE RE LMD+LR VN+SKFVSEAV AIC+AKL+SSDIQAAVQI 
Sbjct: 56  SIKRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICEAKLKSSDIQAAVQIC 115

Query: 121 SLLHQRYKDFAPSLIQGLLKIFSPGKPGDESDTDKNXXXXXXXXXXXXXXXXFFVGVIED 180
           SLLHQRYK+F+ SL QGLLK+F PGK  ++ + DKN                ++VGVIED
Sbjct: 116 SLLHQRYKEFSASLTQGLLKVFFPGKSAEDLEADKNSKAMKKRSTLKLLLELYYVGVIED 175

Query: 181 GAIFITIIKDLTSVEQLKDRDATQTSLTLLSSFARQGRIFLGLSVNGPEIHEEFFKGLAI 240
             IFI IIKDLTSVEQLKDRD TQT+LTLL+SFARQGRIFLGL ++G +  E+FFKGL +
Sbjct: 176 SNIFINIIKDLTSVEQLKDRDTTQTNLTLLTSFARQGRIFLGLPISGQD--EDFFKGLDV 233

Query: 241 TADQKKVLRKACYAFYDAAAELLQSEHSSLRVMEHENSKILNAKGELSEENVASYEKLRK 300
           TADQKK  +KA   +YDA A+LLQSEH  L  ME EN+K++NAKGELSE++ +SYEKLRK
Sbjct: 234 TADQKKSFKKAFNTYYDALADLLQSEHKLLLQMEKENAKLVNAKGELSEDSASSYEKLRK 293

Query: 301 SYDHLYRNVSSLAEALDMQPPVMPADGHTTRVTSGEEGISSASGKDSSVVEPIWDDEDTR 360
           SYDHLYRN+SSLAEALDMQPPVMP DG TTR+T+G+E   S + KD+SV EPIWDDEDT+
Sbjct: 294 SYDHLYRNISSLAEALDMQPPVMPEDG-TTRLTAGDEASPSGTVKDTSVPEPIWDDEDTK 352

Query: 361 AFYECLPDLRAFVPAVLLGETEPKSNEQSVKSQDQSTEILPE-SDKGQTTRESGEVSTDP 419
            FYECLPDLRAFVPAVLLGE EPKSNEQS K++++ +E   E  +  QTT ++ EVS D 
Sbjct: 353 TFYECLPDLRAFVPAVLLGEAEPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADS 412

Query: 420 SAL 422
           +++
Sbjct: 413 ASM 415