Miyakogusa Predicted Gene

Lj0g3v0146489.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146489.1 Non Chatacterized Hit- tr|E1ZCG5|E1ZCG5_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,40,0.00000000005,Neurochondrin,NULL;
NEUROCHONDRIN-RELATED,NULL; NEUROCHONDRIN,Neurochondrin,CUFF.8947.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32050.1 | Symbols:  | neurochondrin family protein | chr4:15...   280   8e-76

>AT4G32050.1 | Symbols:  | neurochondrin family protein |
           chr4:15496620-15500717 FORWARD LENGTH=618
          Length = 618

 Score =  280 bits (715), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 141/240 (58%), Positives = 183/240 (76%), Gaps = 6/240 (2%)

Query: 3   PNREQSPNLEECLKLLKGERDEQRLAGLLLVTKFCKADDHSSLCRVYDAVGPIFLDRLLR 62
           P  E+SP+L++CLKLLKGERDEQRLAGLLLVTKFCK DD  SL +VY+AVG  FLDRL R
Sbjct: 5   PQEERSPSLDDCLKLLKGERDEQRLAGLLLVTKFCKNDDIVSLNKVYEAVGTHFLDRLFR 64

Query: 63  TGMGRGTISSGRG-NNRDAYLSLAVTVLSTFSRVPEIASSEDMVVQIPLILEVMSTQSGS 121
           TG G     SG G +NRD YL +++TVL+ F RVPEIASSE+MV +IPLILEVMS    +
Sbjct: 65  TGSG-----SGDGVDNRDVYLQISITVLAAFCRVPEIASSEEMVSRIPLILEVMSKGITT 119

Query: 122 SVLEECYEFLYLVSTASENGLMRFYESKGIKILASQMSSLQDGSHLVEISVKLLQLILRR 181
           ++LE+CYE LYLVSTA E GLM    S G++++A QMS L DGSH +E+++K+LQL++ +
Sbjct: 120 NMLEDCYELLYLVSTACEAGLMTLINSGGLRVIAPQMSELPDGSHAMEVAIKILQLLVSK 179

Query: 182 ISLDTIQNNYLAELSVIVAVIARQFAVLHNSLKFEALHLLNAILSSKDSSQLRDALQFFP 241
           +   ++      ELS+++A +ARQFAVLHN+LKFEALHLL+A+ SS+ S  L + L+  P
Sbjct: 180 LDCGSMTIERFLELSLVIAAVARQFAVLHNALKFEALHLLSAVFSSEYSELLHEPLRSMP 239