Miyakogusa Predicted Gene

Lj0g3v0146299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146299.1 Non Chatacterized Hit- tr|A5BVV5|A5BVV5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,58.9,2e-19,beta-sandwich domain of Sec23/24,NULL;
zf-Sec23_Sec24,Zinc finger, Sec23/Sec24-type; PROTEIN
TRANSPO,CUFF.8919.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05520.1 | Symbols:  | Sec23/Sec24 protein transport family p...   147   2e-36
AT3G23660.2 | Symbols:  | Sec23/Sec24 protein transport family p...   140   2e-34
AT3G23660.1 | Symbols:  | Sec23/Sec24 protein transport family p...   140   2e-34
AT4G14160.2 | Symbols:  | Sec23/Sec24 protein transport family p...   123   2e-29
AT4G14160.1 | Symbols:  | Sec23/Sec24 protein transport family p...   123   3e-29
AT4G14160.3 | Symbols:  | Sec23/Sec24 protein transport family p...   122   6e-29
AT5G43670.1 | Symbols:  | Sec23/Sec24 protein transport family p...    80   2e-16
AT2G21630.1 | Symbols:  | Sec23/Sec24 protein transport family p...    69   6e-13

>AT1G05520.1 | Symbols:  | Sec23/Sec24 protein transport family
          protein | chr1:1631126-1635703 REVERSE LENGTH=783
          Length = 783

 Score =  147 bits (370), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/82 (76%), Positives = 72/82 (87%)

Query: 1  MSEMASTDPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPYSPLRCK 60
          MSEMAS DPEG+DGVRMTWNVWP +KVEASKCVIP+AA ++ IR H DIP + Y+PLRC+
Sbjct: 1  MSEMASMDPEGIDGVRMTWNVWPRTKVEASKCVIPVAACISPIRYHRDIPSVEYAPLRCR 60

Query: 61 TCTSALNPFARVDFTAKIWICP 82
           CT+ALNPFARVDF AKIWICP
Sbjct: 61 ICTAALNPFARVDFLAKIWICP 82


>AT3G23660.2 | Symbols:  | Sec23/Sec24 protein transport family
          protein | chr3:8513666-8517729 REVERSE LENGTH=791
          Length = 791

 Score =  140 bits (353), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/82 (73%), Positives = 72/82 (87%)

Query: 1  MSEMASTDPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPYSPLRCK 60
          M+E A+TD EG+DGVRMTWNVWP SK EASKCVIPLAA ++ IR H DIP LPY+PLRC+
Sbjct: 1  MAETANTDLEGIDGVRMTWNVWPHSKAEASKCVIPLAACISPIRRHADIPTLPYAPLRCR 60

Query: 61 TCTSALNPFARVDFTAKIWICP 82
          TC++ALN +A+VDFTAK+WICP
Sbjct: 61 TCSAALNAYAQVDFTAKLWICP 82


>AT3G23660.1 | Symbols:  | Sec23/Sec24 protein transport family
          protein | chr3:8513666-8517729 REVERSE LENGTH=765
          Length = 765

 Score =  140 bits (352), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/82 (73%), Positives = 72/82 (87%)

Query: 1  MSEMASTDPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPYSPLRCK 60
          M+E A+TD EG+DGVRMTWNVWP SK EASKCVIPLAA ++ IR H DIP LPY+PLRC+
Sbjct: 1  MAETANTDLEGIDGVRMTWNVWPHSKAEASKCVIPLAACISPIRRHADIPTLPYAPLRCR 60

Query: 61 TCTSALNPFARVDFTAKIWICP 82
          TC++ALN +A+VDFTAK+WICP
Sbjct: 61 TCSAALNAYAQVDFTAKLWICP 82


>AT4G14160.2 | Symbols:  | Sec23/Sec24 protein transport family
          protein | chr4:8167574-8173026 FORWARD LENGTH=772
          Length = 772

 Score =  123 bits (309), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 66/88 (75%), Gaps = 6/88 (6%)

Query: 1  MSEMA------STDPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPY 54
          M+EMA        D EG+DGVRMTWN+WP +KVEASKCVIPLAA+++ IR HP I  LPY
Sbjct: 1  MAEMADKAKVEEMDWEGIDGVRMTWNLWPRTKVEASKCVIPLAASISPIRRHPLILDLPY 60

Query: 55 SPLRCKTCTSALNPFARVDFTAKIWICP 82
          +PL CKTC + LN FARVDF A  W+CP
Sbjct: 61 APLDCKTCKALLNAFARVDFAAMNWVCP 88


>AT4G14160.1 | Symbols:  | Sec23/Sec24 protein transport family
          protein | chr4:8167574-8173026 FORWARD LENGTH=773
          Length = 773

 Score =  123 bits (309), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 66/88 (75%), Gaps = 6/88 (6%)

Query: 1  MSEMA------STDPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPY 54
          M+EMA        D EG+DGVRMTWN+WP +KVEASKCVIPLAA+++ IR HP I  LPY
Sbjct: 1  MAEMADKAKVEEMDWEGIDGVRMTWNLWPRTKVEASKCVIPLAASISPIRRHPLILDLPY 60

Query: 55 SPLRCKTCTSALNPFARVDFTAKIWICP 82
          +PL CKTC + LN FARVDF A  W+CP
Sbjct: 61 APLDCKTCKALLNAFARVDFAAMNWVCP 88


>AT4G14160.3 | Symbols:  | Sec23/Sec24 protein transport family
          protein | chr4:8167574-8172266 FORWARD LENGTH=620
          Length = 620

 Score =  122 bits (305), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 66/88 (75%), Gaps = 6/88 (6%)

Query: 1  MSEMA------STDPEGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPY 54
          M+EMA        D EG+DGVRMTWN+WP +KVEASKCVIPLAA+++ IR HP I  LPY
Sbjct: 1  MAEMADKAKVEEMDWEGIDGVRMTWNLWPRTKVEASKCVIPLAASISPIRRHPLILDLPY 60

Query: 55 SPLRCKTCTSALNPFARVDFTAKIWICP 82
          +PL CKTC + LN FARVDF A  W+CP
Sbjct: 61 APLDCKTCKALLNAFARVDFAAMNWVCP 88


>AT5G43670.1 | Symbols:  | Sec23/Sec24 protein transport family
          protein | chr5:17539025-17541733 REVERSE LENGTH=794
          Length = 794

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 47/73 (64%)

Query: 10 EGVDGVRMTWNVWPSSKVEASKCVIPLAATVAVIRPHPDIPRLPYSPLRCKTCTSALNPF 69
          E ++G+R +WN WP++K +    V+PL+     +    ++P +PY PL C  C + LNP+
Sbjct: 7  EAIEGLRWSWNSWPTTKSDCESLVVPLSIMYTPLMHFSELPTIPYDPLICSRCGAVLNPY 66

Query: 70 ARVDFTAKIWICP 82
          ARVD+ ++IW CP
Sbjct: 67 ARVDYQSRIWSCP 79


>AT2G21630.1 | Symbols:  | Sec23/Sec24 protein transport family
          protein | chr2:9250346-9253829 FORWARD LENGTH=761
          Length = 761

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 10 EGVDGVRMTWNVWP--SSKVEASKCVIPLAATVAVIRP-HPDIPRLPYSPLRCKTCTSAL 66
          E  DGVRM WN+ P  + K ++    +P++A    ++P       LPYSPLRC+TC S L
Sbjct: 8  EAQDGVRMPWNIIPVATKKEQSIDSEVPVSAIYTPLKPLRSQSLLLPYSPLRCRTCRSVL 67

Query: 67 NPFARVDFTAKIWICP 82
          NP++ VDF+A  W CP
Sbjct: 68 NPYSVVDFSACNWGCP 83