Miyakogusa Predicted Gene

Lj0g3v0146199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0146199.1 Non Chatacterized Hit- tr|I1LKG9|I1LKG9_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,37.1,0.041,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; NUCLEAR
PORE GLYCOPROTEIN P62-RELATED,Nucleoporin NSP1/N,CUFF.8917.1
         (619 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45000.1 | Symbols: EMB2766 | structural constituent of nucle...   378   e-105

>AT2G45000.1 | Symbols: EMB2766 | structural constituent of nuclear
           pore | chr2:18564156-18567632 FORWARD LENGTH=739
          Length = 739

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/208 (86%), Positives = 192/208 (92%)

Query: 412 PKLPSEITGKTVEEIIKEWNAELQERTGKFRKQANAIAEWDHRILRNRDVLLRLEIAVAK 471
           PKLPSEITGKTVEEIIKEWN ELQERTG+FRKQANAIAEWD RIL+NRDVLLRLEI VAK
Sbjct: 532 PKLPSEITGKTVEEIIKEWNTELQERTGRFRKQANAIAEWDKRILQNRDVLLRLEIEVAK 591

Query: 472 VVETQSNLERQLELIETHQQEADKALQSMEEEAERIYKDERGLLLDDEAASTRDAMYEQS 531
           VVETQS+LERQLELIETHQQE DKALQSMEEEAERIY DER  LLDDEAASTRDAMYEQS
Sbjct: 592 VVETQSSLERQLELIETHQQEVDKALQSMEEEAERIYNDERKSLLDDEAASTRDAMYEQS 651

Query: 532 ELIERELEHMTEQIKSIIQSLNSNQGGELDAADGMNPLDAVVRILNNQLTSLMWIDEKAE 591
           EL+ERELEHMTEQI+SIIQS+N+NQGGEL+A DGM+PLD VVRILNNQL+SLMWIDEKAE
Sbjct: 652 ELVERELEHMTEQIRSIIQSVNANQGGELEAIDGMSPLDVVVRILNNQLSSLMWIDEKAE 711

Query: 592 EFSSRIQKLSNQGSASDRELTGPGMWMS 619
           EFSSRIQK++ QGS  DREL  P  WMS
Sbjct: 712 EFSSRIQKIALQGSGGDRELMAPKHWMS 739