Miyakogusa Predicted Gene
- Lj0g3v0146069.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0146069.2 Non Chatacterized Hit- tr|K4BQG2|K4BQG2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,23.96,3e-18,A
Receptor for Ubiquitination Targets,F-box domain, cyclin-like;
seg,NULL; FBOX,F-box domain, cyclin,CUFF.8907.2
(467 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25750.1 | Symbols: | F-box family protein with a domain of ... 74 2e-13
AT3G56470.1 | Symbols: | F-box family protein | chr3:20934815-2... 68 1e-11
AT2G17030.1 | Symbols: | F-box family protein with a domain of ... 63 4e-10
AT2G26160.1 | Symbols: | F-box family protein with a domain of ... 60 5e-09
AT5G66830.1 | Symbols: | F-box family protein with a domain of ... 57 2e-08
AT4G17565.1 | Symbols: | F-box family protein with a domain of ... 55 1e-07
AT2G05970.1 | Symbols: | F-box family protein with a domain of ... 53 5e-07
AT1G44080.1 | Symbols: | F-box family protein with a domain of ... 50 3e-06
>AT3G25750.1 | Symbols: | F-box family protein with a domain of
unknown function (DUF295) | chr3:9400955-9402088 FORWARD
LENGTH=348
Length = 348
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 157/385 (40%), Gaps = 59/385 (15%)
Query: 70 VDWSSLPQGVLEMVAEKLSF-IDCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWLLVSGQ 128
+WS LP+ +L+++A + S ID L C+SW S + +R F +
Sbjct: 4 TEWSDLPEELLDLIANRYSSNIDVLRIRSTCKSWRSAVA-----MSKERLQFRFERYLPT 58
Query: 129 QNQEVRTCISIMENRIWELELPEVKGKYCWGSFRDWLILVKNLDTFQLEVNLLNPFS--- 185
N++++ +S + + LP + WL+ + ++ LL P S
Sbjct: 59 SNKKIKAHLS--PTTFFRITLPSSCPN------KGWLVRTRQASKMYRKITLLCPLSGER 110
Query: 186 --RS-------EVSLPTMWNFYHKMVLSGLPSENNFICMVLHSQHRELAFWIP--GAQSW 234
RS +V + + Y + GL E + + S + + + IP G++SW
Sbjct: 111 ITRSHQTLDLLKVGVSEIRQSYEIQIFDGLKDEKIPLDSEIFSNYIKNSDKIPSEGSRSW 170
Query: 235 RKHKLKGEPFEDAVLCNGSFYLLGDGFNIWQIDVKSIYSSISQGDSETEMQFHEEKGPEI 294
K K + E F D +L G Y + IW I + + +I Q S T + +++ +
Sbjct: 171 TKIKNQVEDFSDIILHMGRIYAVDLKGAIWWISLSQL--TIVQQTSSTPLDYYKYDSCQ- 227
Query: 295 QIQEGMLVQGDDNSRFLKYLVEFSGKLLLVHRYFSNKPGVVLETRKFEVYSLDYCQPSWK 354
++R LVE+ G L +VH S + T F+VY +D W
Sbjct: 228 ------------DTR----LVEYCGDLCIVHE-LSITRNHIQRTVGFKVYKMDEDLAKWV 270
Query: 355 KVEDLGDQMIFLGKCSSASFSAKELGVGISNSIYFCNDQTAPWWNEWDSDHFKGISLRLG 414
+V LGD + + S + A E + NSIYF +++ +++ K L G
Sbjct: 271 EVSCLGDNTLIVACNSCFTVVASEYHGCLKNSIYF------SYYDVKKAENIKVFKLDDG 324
Query: 415 --LNKTDGGHWGNFRLYNMDGEPFF 437
+TD F ++++ PF
Sbjct: 325 SITQRTDISSQSCFHMFSL---PFL 346
>AT3G56470.1 | Symbols: | F-box family protein |
chr3:20934815-20936017 FORWARD LENGTH=367
Length = 367
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 129/330 (39%), Gaps = 53/330 (16%)
Query: 69 YVDWSSLPQGVLEMVAEKLSFIDCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWLLVSGQ 128
Y + +LP +L++V +L D + S VC++W+ H PWL+ +
Sbjct: 26 YQTFINLPCDLLQLVISRLPLKDNIRASAVCKTWHEACVS-----LRVIHTSPWLIYFSK 80
Query: 129 QNQEVRTCISIMENRIWELELPEVKG-KYCWGSFRDWLILVKNLDTFQLEVNLLNPFSRS 187
+ M+ L PE+ G + C+ +D +L+ N +++QL NPF+R
Sbjct: 81 TDDSYELYDPSMQKNC-NLHFPELSGFRVCYS--KDGWLLMYNPNSYQLL--FFNPFTRD 135
Query: 188 EVSLPTMWNFY-HKMVLSGLPSENNFICMVLHS---QHRELAFWIPGAQSWRKHKLKGE- 242
V +PT+W Y +M S P+ + + + S + + + A+ W+ K
Sbjct: 136 CVPMPTLWMAYDQRMAFSCAPTSTSCLLFTVTSVTWNYITIKTYFANAKEWKTSVFKNRL 195
Query: 243 -----PFEDAVLCNGSFYLLGDGFNIWQIDVKSIYSSISQGDSETEMQFHEEKGPEIQIQ 297
FE V NG FY L + + D Y ++ G + P+
Sbjct: 196 QRNFNTFEQIVFSNGVFYCLTNTGCLALFDPSLNYWNVLPG-----------RPPKRPGS 244
Query: 298 EGMLVQGDDNSRFLKYLVEFSGKLLLVHRYFSNKPGVVLETRKFEVYSLDYCQPSWKKVE 357
G ++ E G++ L++ Y P V+ LD W + +
Sbjct: 245 NGC------------FMTEHQGEIFLIYMYRHMNPTVL---------KLDLTSFEWAERK 283
Query: 358 DLGDQMIFLGKCSSASFSAKELGVGISNSI 387
LG I+ SS S + ++ GI N +
Sbjct: 284 TLGGLTIYASALSSESRAEQQKQSGIWNCL 313
>AT2G17030.1 | Symbols: | F-box family protein with a domain of
unknown function (DUF295) | chr2:7399108-7400650 FORWARD
LENGTH=407
Length = 407
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 150/376 (39%), Gaps = 91/376 (24%)
Query: 70 VDWSSLPQGVLEMVAEKL-SFIDCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWLLVSGQ 128
VDWS+LP+ +L+++++ L S D + F VC SW S P H P L +G
Sbjct: 2 VDWSTLPKDLLDLISKSLESSFDLIQFRSVCSSWRSAAE---PKSPLPTHHLPILPDNGG 58
Query: 129 Q---NQEVRTCISIMENRIWELELPEVKGKYCWGSFRDWLILVKNLDTFQLEVNLLNPFS 185
+ V +S + + P ++ SF WLI V+ +V LL+P
Sbjct: 59 SLFPDSAVGFRLSQRSILLIKPHEPCIESD----SF-GWLIKVEEDLNVPRKVTLLDPLC 113
Query: 186 RSEVSLPTMWN--------------------------------FYHKMVLSGLPSENN-- 211
+ S+P + + K V+ L + +
Sbjct: 114 DTRNSIPENFPRVLDMSKFKVRELGREFKLHYFNTVGDIVESLYLEKAVVKYLDCDGDYK 173
Query: 212 FICMVLHSQHRELAFWIPGAQSWRKHKLKGEPFEDAVLCNGSFYLLGDGFNIWQIDVKSI 271
F+ + +H + LA + ++W P++D +L +G F+ + + +D
Sbjct: 174 FVLLTIHVSGK-LAVFRSWDRAWTVINDMPSPYDDVMLFDGRFFAVDNNGRTVVVD---- 228
Query: 272 YSSISQGDSETEMQFHEEKGPEIQIQEGMLVQGDDNSRFLKYLVEFSGKLLLVHRYFS-- 329
YSS+ ++ + + GD K+L+E G++LLV Y S
Sbjct: 229 YSSL-----------------KLTLVASPVFGGDK-----KFLIESCGEMLLVDMYLSLE 266
Query: 330 ---NKPGVVLE------------TRKFEVYSLDYCQPSWKKVEDLGDQMIFLGKCSSASF 374
PG V E T KF+VY + SW V DL D+M+FLG S+ S
Sbjct: 267 AVEGDPGFVEEIFEHPAFYMNERTVKFKVYRFVEREESWVDVYDLEDKMLFLGDDSTFSA 326
Query: 375 SAKE-LGVGISNSIYF 389
SA + L + +S++F
Sbjct: 327 SASDILPLCDGSSVFF 342
>AT2G26160.1 | Symbols: | F-box family protein with a domain of
unknown function (DUF295) | chr2:11138456-11139451
REVERSE LENGTH=331
Length = 331
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 140/356 (39%), Gaps = 73/356 (20%)
Query: 71 DWSSLPQGVLEMVAEKLSFI-DCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWLLVSGQQ 129
+WS LP ++ + A + S I D L +C+ W S +S + P
Sbjct: 5 EWSELPGDLINLTANRFSSISDVLRVRSICKPWRSAAATP----KSFQCNLP------SS 54
Query: 130 NQEVRTCISIMENRIWELELPEVKGKYCWGSFRDWLILVKNLDTFQLEVNLLNPFSR--- 186
N+ + T +S + + P S++ WLI K + ++NLL+PF R
Sbjct: 55 NKMIETVLS--PTTFFRVTGPSS------CSYKGWLIRTKQVSESS-KINLLSPFFRQLL 105
Query: 187 --------------SEVSLPTMWNFYHKMVLSGLPSENN---------FICMVLHSQHRE 223
SE+ + + K ++ G+ + F+ ++ + ++
Sbjct: 106 TPSQQTLDLLKFEVSEIRQSYEIHIFDKYLIQGVIGKEGPSHILSRVVFLDNLIFAVGQD 165
Query: 224 LAFWI-----PGAQSWRKHKLKGEPFEDAVLCNGSFYLLGDGFNIWQIDVKSIYSSISQG 278
W ++ W K K + E F D +L G Y L IW I + +
Sbjct: 166 DKIWCCKSGEESSRIWTKIKNQVEDFLDIILHKGQVYALDLTGAIWWISLSPL------- 218
Query: 279 DSETEMQFHEEKGPEIQIQEGMLVQGDDNSRFLKYLVEFSGKLLLVHRYFSNKPGVVLET 338
+ +QF P I M G D+ K LVE+ G L ++H+ K +
Sbjct: 219 ---SLLQF----TPSIP----MDYDGYDSCN--KRLVEYCGDLCIIHQLRLKKAYIRRSQ 265
Query: 339 RK--FEVYSLDYCQPSWKKVEDLGDQMIFLGKCSSASFSAKELGVGISNSIYFCND 392
R F+VY +D W +V LGD+ + + + S + A E ++NSIYF ++
Sbjct: 266 RTVGFKVYKMDEYVAKWVEVRSLGDKALIVARDSCFTVVASEYHGCLNNSIYFVDN 321
>AT5G66830.1 | Symbols: | F-box family protein with a domain of
unknown function (DUF295) | chr5:26691304-26692488
FORWARD LENGTH=394
Length = 394
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 142/339 (41%), Gaps = 38/339 (11%)
Query: 72 WSSLPQGVLEMVAEKLSFIDCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWLLVSGQQNQ 131
WS LP +++ V ++L F D VC SW SV PN Q PW++ + N
Sbjct: 20 WSKLPSDLMQFVFDRLGFADFQRAKSVCSSWLSVSRNSQPNNQ-----IPWMIRFPKDNN 74
Query: 132 EVRTCISIMENRIWELELPEVKGKY----CWGSFRDWLILV-------KNLDTFQLEVNL 180
E++++ + P + + C S+ WL++ ++LD + +
Sbjct: 75 HCLLFNPEEEDKMY--KTPNLGNDFAKSSCIASYGSWLLMQPESEYMEEDLDHQCNNLYI 132
Query: 181 LNPFSRSEVSLPTMWNFYHKMVLSGLPSENNFICMVLHSQHRELAF-WIPGAQSWRK-HK 238
L+ +R ++LP + + E + +V+ H ELA + G SW++
Sbjct: 133 LDLLTRERINLPILQPEFGLTCPILWTDEKSKDHLVIGMAHEELAISFKKGDSSWKQIPT 192
Query: 239 LKG------EPFEDAVLCNGSFYLLGDGFNIWQIDVKSIYSSISQGDSETEMQFHEEKGP 292
L G F+D L S Y L I VK +S+S+ + + P
Sbjct: 193 LSGIEECFSMVFKDHKLYCLSNYKLKVFDFSGDIPVKVFKTSVSKLLNNPLCISMRMRLP 252
Query: 293 EIQIQEGMLVQGDDNSRFLKYLVEFSGKLLLVHRYFSNKPGVVLETRKFEVYSLDYCQPS 352
I +++ + DD +V +G +L+V ++P + + FE+Y ++
Sbjct: 253 GIPMKDQLNHFKDD------MVVTLAGHVLIVK---CHRPSLS-KIWSFEIYKMEGNNNK 302
Query: 353 WKKVEDLGDQMIFLGKCSSASFSAKELGVGISNSIYFCN 391
W+K LGD+ I L + AK++ +NSIYF N
Sbjct: 303 WEKTVSLGDETILLDL--GITVLAKDMQGIKANSIYFSN 339
>AT4G17565.1 | Symbols: | F-box family protein with a domain of
unknown function (DUF295) | chr4:9782508-9783644 REVERSE
LENGTH=378
Length = 378
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/340 (21%), Positives = 135/340 (39%), Gaps = 49/340 (14%)
Query: 72 WSSLPQGVLEMVAEKLSFIDCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWLLVSGQ--Q 129
WS L +L + E+LSF + VCRSWNS +P +R+ PW+++ Q +
Sbjct: 18 WSELCPDLLRSIFEQLSFTNLNRAKLVCRSWNSASRGCVP----KRNQIPWMILFPQKSE 73
Query: 130 NQEVRTCISIMEN------RIWELELPEVKGKYCWGSFRDWLILVKNLDTFQLEVNLLNP 183
N C+ + + + +L + + C ++ WL++ +L + LNP
Sbjct: 74 NNSSNNCVLFVPDDNDKVYKTRDLGV-DFAQSICLATYGSWLLMFNHLRNLYI----LNP 128
Query: 184 FSRSEVSLPTMWNFYHKMVLSGLPSE-------NNFI--CMVLHSQHRELAFWIPGAQSW 234
+ + LP + M NN +V+ + + F G +W
Sbjct: 129 LTLERIDLPHSTSINPNMCYPNFKYYRSACLWINNITKDYLVVWPIYNKCFFTKKGDDTW 188
Query: 235 RKHKLKGEPFEDAVLCNGSFYLLGDGFNIWQIDVKSIYSSISQGDSETEMQFHEEKGPEI 294
R +D ++ N ++Q + Y I D +++ ++ P +
Sbjct: 189 RFAPACHIRMKDQIIYNHK------DHKVYQY---ASYGFIYVWDFSSDIPHVDKHLPAV 239
Query: 295 QIQEGMLVQGDDNSRFL---KYLVEFSGKLLLVH--RYFSNKPGVVLETRKFEVYSLDYC 349
G + GD N + + ++ SG++++V Y+ L +F ++ L+
Sbjct: 240 SFISGREI-GDKNKYYRISHQMVMSLSGEVVVVKIMHYYD------LSRWRFRIFELNPL 292
Query: 350 QPSWKKVEDLGDQMIFLGKCSSASFSAKELGVGISNSIYF 389
W KV+ LGD I L + AK++ NSIYF
Sbjct: 293 TQRWVKVDSLGDAAIILDM--GITVVAKDIPGIKKNSIYF 330
>AT2G05970.1 | Symbols: | F-box family protein with a domain of
unknown function (DUF295) | chr2:2308651-2309784 REVERSE
LENGTH=377
Length = 377
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 145/350 (41%), Gaps = 49/350 (14%)
Query: 64 LENKYYVDWSSLPQGVLEMVAEKLSFIDCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWL 123
+E WS L VL V E LSF D VC SW+S +P ++ PWL
Sbjct: 2 IETNKKASWSELCPDVLRCVFELLSFSDLNRTRSVCSSWHSASRHCVPT----QNQIPWL 57
Query: 124 LV---SGQQNQEVRTCISIMENRIWELELPEVKG-----KYCWGSFRDWLILVKNLDTFQ 175
++ + N +C+ + + L + G C ++ W++++ L
Sbjct: 58 ILFPRNNVNNNNNNSCVLFVPDDRDSLYKTKDLGVGFMLSNCLATYGSWILMMDRL---- 113
Query: 176 LEVNLLNPFSRSEVSLPTMWNFYHKMVLSGLPSENNFICMVLHSQHRE----------LA 225
+N+LNP + ++ LP K L L E++ C+ + + ++ L
Sbjct: 114 CNLNILNPLTGEKIDLPRT-----KFDLPRL--ESSVACLWIDEKTKDYIVVWKIKNSLV 166
Query: 226 FWIPGAQSWRK-HKLKGEPFEDAVLCNGSFYLLGDGFNIWQIDVKSIYSSISQGDSETEM 284
+ G +W++ + E + ++ L FN + + + G E +
Sbjct: 167 YAKKGNHTWQQVFSMNEELSVEQIVYEHKTQKLYVHFNDSTLSIWRLSREDPHGVFENYI 226
Query: 285 QFH---EEKGPEIQIQEGMLVQGDDNSRFLKYLVEFSGKLLLVHRYFSNKPGVVLETRK- 340
F ++ P+ + E + V+ ++R L + SG+LL V VV ++++
Sbjct: 227 PFDFVFQDFLPDRRTDEELYVKEYIDTR-LNIALTTSGELLKV-------ASVVQKSKRW 278
Query: 341 -FEVYSLDYCQPSWKKVEDLGDQMIFLGKCSSASFSAKELGVGISNSIYF 389
F +Y ++Y + W+++E LGD+ + L + AK++ NSIY
Sbjct: 279 LFRIYKMNYIKRRWERIESLGDEALILDM--GITIVAKDIPGLKRNSIYI 326
>AT1G44080.1 | Symbols: | F-box family protein with a domain of
unknown function (DUF295) | chr1:16753944-16755670
REVERSE LENGTH=347
Length = 347
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 137/343 (39%), Gaps = 56/343 (16%)
Query: 70 VDWSSLPQGVLEMVAEKLSF-IDCLSFSKVCRSWNSVLGEELPNWQSQRHGFPWLLVSGQ 128
V WS L + +++++A LS I+ L F +C+ W S + + + + F L + +
Sbjct: 4 VGWSDLHEDLIDLLANNLSSNINLLRFRSICKPWRSTVATK----KRLHNHFERNLPTFK 59
Query: 129 QNQEVRTCISIMENRIWELELPEVKGKYCWGSFRDWLILVKNLDTFQL-EVNLLNPFSRS 187
+ + V + + + + LP W L+KN + + NLL+P S
Sbjct: 60 KKKTV-----VSPSTFFRVTLPSPCRNKGW--------LIKNRQVSESSKNNLLSPLSGK 106
Query: 188 EVS-------LPTMWNFYHKMVLSGLPSENNFICM--VLHSQHRELAFWIPGAQSWRKH- 237
++ L + F +L + + + V + W + +H
Sbjct: 107 TITPSDKTLDLLKVECFRDSSILQLFADSDRVVFLDNVFFVVDFKNEIWCCKSGEETRHW 166
Query: 238 ----KLKGEPFEDAVLCNGSFYLLGDGFNIWQIDVKSIYSSISQGDSETEMQFHEEKGPE 293
+ + F D +L G Y L IW I + + SI Q T + F+E
Sbjct: 167 TRINNEEAKGFLDIILHKGKIYALDLTGAIWWISLSEL--SIYQYGPSTPVDFYEI---- 220
Query: 294 IQIQEGMLVQGDDNSRFLKYLVEFSGKLLLVHRY---FSNKPGVVLETRKFEVYSLDYCQ 350
DN + K LVE+ G+L +VHR+ F K + T F+VY +D
Sbjct: 221 ------------DNCK-EKRLVEYCGELCVVHRFYKKFCVKRVLTERTVCFKVYKMDKNL 267
Query: 351 PSWKKVEDLGDQMIFLGKCSSASFSAKELGVGISNSIYFCNDQ 393
W +V LGD+ + + + A E + N+IYF ND+
Sbjct: 268 VEWVEVSSLGDKALIVATDNCFLVLASEYYGCLENAIYF-NDR 309