Miyakogusa Predicted Gene

Lj0g3v0145439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0145439.1 tr|G7IYW1|G7IYW1_MEDTR Uridine 5'-monophosphate
synthase OS=Medicago truncatula GN=MTR_3g017580 PE=3,93.72,0,no
description,NULL; no description,Aldolase-type TIM barrel; seg,NULL;
OMPdecase,Orotidine 5'-phosp,CUFF.8877.1
         (478 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54470.1 | Symbols:  | uridine 5'-monophosphate synthase / UM...   708   0.0  

>AT3G54470.1 | Symbols:  | uridine 5'-monophosphate synthase / UMP
           synthase (PYRE-F) (UMPS) | chr3:20168285-20170245
           REVERSE LENGTH=476
          Length = 476

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/475 (73%), Positives = 395/475 (83%), Gaps = 2/475 (0%)

Query: 5   SLKESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLIISYPSLL-HXXXXXXXXXXXXX 63
           S  E+L+LQLHEI AVKFGNFKLKSGI SP+YIDLRLI+SYPSLL               
Sbjct: 2   SAMEALILQLHEIGAVKFGNFKLKSGIFSPVYIDLRLIVSYPSLLTQISQTLISSLPPSA 61

Query: 64  XFDVVCGVPYTALPIATSVSLAQNIPMVMRRKEVKDYGTAKAIEGDFEPGQSCLIIEDLV 123
            FDVVCGVPYTALPIAT VS++  IPM+MRRKE+KDYGT+KAIEG FE  Q+CLIIEDLV
Sbjct: 62  TFDVVCGVPYTALPIATVVSVSNGIPMLMRRKEIKDYGTSKAIEGIFEKDQTCLIIEDLV 121

Query: 124 TSGTSVLETAAPLRSVGLKITDAVVLIDREQGGRENLEENGIKLHAIIKLTEMVKILKDH 183
           TSG SVLETAAPLR+VGLK++DAVVLIDR+QGGRENL ENGIKLH++I LT+MV++LK+ 
Sbjct: 122 TSGASVLETAAPLRAVGLKVSDAVVLIDRQQGGRENLAENGIKLHSMIMLTDMVRVLKEK 181

Query: 184 GKLDEEMVGVVTRFLDENRKVASVAKVEKPTTKAKALSFVERSKLSKNPTGKRLFEIMAE 243
           GK++ E+   + +FL+ENR+V SV  VEKP  K + L F ERS+LSKNPTGK+LF+IM +
Sbjct: 182 GKIEVEVEVNLLKFLEENRRV-SVPSVEKPKPKPRVLGFKERSELSKNPTGKKLFDIMLK 240

Query: 244 KESNLCLAADVGTAAELLEIAEKVGPEICLLKTHVDILPDFTPDFGSKLLSIAEKHNFLI 303
           KE+NLCLAADVGTAAELL+IA+KVGPEICLLKTHVDILPDFTPDFGSKL +IA+KH FLI
Sbjct: 241 KETNLCLAADVGTAAELLDIADKVGPEICLLKTHVDILPDFTPDFGSKLRAIADKHKFLI 300

Query: 304 FEDRKFADIGNTVTMQYEGGIFHILDWAHIVNAHIISGPGIVDXXXXXXXXXXXXXXXXA 363
           FEDRKFADIGNTVTMQYEGGIF IL+WA I+NAH+ISGPGIVD                A
Sbjct: 301 FEDRKFADIGNTVTMQYEGGIFKILEWADIINAHVISGPGIVDGLKLKGMPRGRGLLLLA 360

Query: 364 EMSSAGNFAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTG 423
           EMSSAGN A GDYTAAAVKIA+ HSDFV+GFISVNPASW    + PS I ATPGVQMV G
Sbjct: 361 EMSSAGNLATGDYTAAAVKIADAHSDFVMGFISVNPASWKCGYVYPSMIHATPGVQMVKG 420

Query: 424 GDALGQQYNTPYSVVHDRGSDIIIVGRGIIKAANPAEAAHEYRLQGWNAYLAKCA 478
           GDALGQQYNTP+SV+ +RGSDIIIVGRGIIKA NPAE AHEYR+QGWNAYL KC+
Sbjct: 421 GDALGQQYNTPHSVITERGSDIIIVGRGIIKAENPAETAHEYRVQGWNAYLEKCS 475