Miyakogusa Predicted Gene

Lj0g3v0144479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0144479.1 Non Chatacterized Hit- tr|I1KXQ4|I1KXQ4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32363 PE,97.78,2e-19,
,CUFF.8765.1
         (46 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 | chr...    94   2e-20
AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 | chr...    62   6e-11
AT4G25000.1 | Symbols: ATAMY1, AMY1 | alpha-amylase-like | chr4:...    46   5e-06

>AT1G69830.1 | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 |
           chr1:26288518-26293003 REVERSE LENGTH=887
          Length = 887

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/46 (86%), Positives = 44/46 (95%)

Query: 1   MDHNQDAHRQRIVDWINATGGTAGAFDVTTKGILHSALERCEYWRL 46
           MD+NQDAHRQRIVDWINAT G AGAFDVTTKGILH+AL++CEYWRL
Sbjct: 703 MDYNQDAHRQRIVDWINATSGAAGAFDVTTKGILHTALQKCEYWRL 748


>AT1G76130.1 | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 |
           chr1:28561647-28563914 FORWARD LENGTH=413
          Length = 413

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%), Gaps = 1/46 (2%)

Query: 1   MDHNQDAHRQRIVDWINATGGTAGAFDVTTKGILHSALERCEYWRL 46
           +D+NQD+HRQRI+ WI+ATG  + AFD TTKGIL  A+ + +YWRL
Sbjct: 230 LDYNQDSHRQRIISWIDATGQISAAFDFTTKGILQEAV-KGQYWRL 274


>AT4G25000.1 | Symbols: ATAMY1, AMY1 | alpha-amylase-like |
           chr4:12852109-12853825 REVERSE LENGTH=423
          Length = 423

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 1   MDHNQDAHRQRIVDWIN-ATGGTAGAFDVTTKGILHSALERCEYWRL 46
           +D++Q+ HR  +  WI  A GG   AFD TTKGIL SA+ + E WRL
Sbjct: 241 LDYDQNEHRSGLKQWIEEAGGGVLTAFDFTTKGILQSAV-KGELWRL 286