Miyakogusa Predicted Gene
- Lj0g3v0142799.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0142799.1 tr|B9H1D7|B9H1D7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555346 PE=4
SV=1,29.28,8e-19,FAMILY NOT NAMED,NULL; PPR,Pentatricopeptide repeat;
PPR_2,Pentatricopeptide repeat; seg,NULL; PPR: ,CUFF.8726.1
(266 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 297 4e-81
AT3G13160.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 143 1e-34
AT1G55890.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 139 2e-33
AT4G36680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 120 1e-27
AT2G18520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 107 1e-23
AT3G13150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 105 4e-23
AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336 | c... 81 8e-16
AT3G14580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 73 2e-13
AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 73 3e-13
AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:1931... 72 4e-13
AT1G07740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 71 6e-13
AT1G74580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 70 2e-12
AT5G16420.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 69 2e-12
AT1G11630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 69 4e-12
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 65 3e-11
AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 65 4e-11
AT1G12700.1 | Symbols: | ATP binding;nucleic acid binding;helic... 64 8e-11
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 64 1e-10
AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 64 1e-10
AT2G17670.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 64 1e-10
AT2G17670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 63 2e-10
AT3G04760.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 62 3e-10
AT1G06710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 62 4e-10
AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 62 4e-10
AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 62 4e-10
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 5e-10
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 62 5e-10
AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 62 6e-10
AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 61 6e-10
AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 61 6e-10
AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 61 7e-10
AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 61 8e-10
AT1G12300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 61 1e-09
AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 60 1e-09
AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 60 1e-09
AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 60 2e-09
AT3G48810.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 60 2e-09
AT5G46100.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 60 2e-09
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232... 60 2e-09
AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 59 3e-09
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su... 59 3e-09
AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 59 3e-09
AT1G52620.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 59 3e-09
AT2G15630.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 59 4e-09
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 59 4e-09
AT1G77405.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 59 5e-09
AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 58 5e-09
AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 58 6e-09
AT4G26680.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 58 8e-09
AT4G26680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 58 8e-09
AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 57 9e-09
AT1G73400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 57 1e-08
AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 57 1e-08
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ... 57 1e-08
AT1G30290.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 56 2e-08
AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 3e-08
AT1G09680.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 4e-08
AT1G64580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 5e-08
AT1G03560.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 55 5e-08
AT1G77340.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 6e-08
AT5G55840.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 6e-08
AT5G15010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 6e-08
AT1G31840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 6e-08
AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 7e-08
AT2G17525.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 8e-08
AT1G79540.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 8e-08
AT5G48730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 9e-08
AT3G22670.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 9e-08
AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 54 9e-08
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr... 54 1e-07
AT1G53330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 1e-07
AT5G40400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 1e-07
AT5G18475.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 1e-07
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381... 54 1e-07
AT2G17140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 1e-07
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ... 54 1e-07
AT3G07290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 1e-07
AT4G19440.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 53 2e-07
AT4G19440.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 53 2e-07
AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 53 2e-07
AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) ... 53 2e-07
AT5G47360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 53 2e-07
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr... 53 2e-07
AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 2e-07
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su... 53 3e-07
AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 3e-07
AT1G19290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 3e-07
AT5G42310.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 4e-07
AT1G06580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 4e-07
AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 5e-07
AT5G38730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 52 5e-07
AT3G61520.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 6e-07
AT5G28460.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 6e-07
AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 6e-07
AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 6e-07
AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 6e-07
AT2G26790.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 6e-07
AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 51 7e-07
AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 51 7e-07
AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 7e-07
AT5G28370.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 7e-07
AT2G01740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 8e-07
AT5G14080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 51 9e-07
AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 9e-07
AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 1e-06
AT1G02420.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT1G64100.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 1e-06
AT1G64100.2 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 1e-06
AT1G18900.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT1G18900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT1G09820.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 50 1e-06
AT1G18900.3 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 1e-06
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ... 50 2e-06
AT1G22960.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 2e-06
AT2G02150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 2e-06
AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 3e-06
AT2G32630.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 49 3e-06
AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 4e-06
AT2G36240.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 4e-06
AT3G18020.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 4e-06
AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 5e-06
AT2G37230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 48 6e-06
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 7e-06
AT1G74750.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 48 7e-06
>AT1G80150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:30148738-30149931 FORWARD
LENGTH=397
Length = 397
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/277 (55%), Positives = 188/277 (67%), Gaps = 13/277 (4%)
Query: 1 MLSLRSTRRLRNFTTSAVSAAA----------AKNPLQPPALDKLKAERDPHKLFLLFKA 50
MLSLR RR +F +SA + A PL+ PAL KLK+ERDP KL+ LFKA
Sbjct: 1 MLSLRHIRRFCHFPSSAATGIAYVSTESNQIQGLKPLEEPALVKLKSERDPEKLYNLFKA 60
Query: 51 NATNRLLIENRIAFDDTVSRLAGARRFDYIXXXXXXXXXXPQARREGFIVRIIGLYGKVG 110
NATNRL+IENR AF+DTVSRLAGA R D+I PQ RREGFIVRII LYGK G
Sbjct: 61 NATNRLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGFIVRIIMLYGKAG 120
Query: 111 MTQHALETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSI 168
MT+ AL+TF++MD +R+VKSFNA L+VL+ + EFL A K+ I +D S
Sbjct: 121 MTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSF 180
Query: 169 NIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMV 228
NI +K+FC++G L AY+ M E E G+ PDVVTYTTLI+A Y+H R IGNGLWN MV
Sbjct: 181 NIAIKSFCELGILDGAYMAMREMEKS-GLTPDVVTYTTLISALYKHERCVIGNGLWNLMV 239
Query: 229 LKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
LKGC PNL TFN R+ FLV RRAWDAN ++ LM ++
Sbjct: 240 LKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLLMPKL 276
>AT3G13160.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4229994-4231178 REVERSE
LENGTH=394
Length = 394
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 124/240 (51%), Gaps = 3/240 (1%)
Query: 6 STRRLRNFTTSAVSAAAAKNPLQPPALDKLKAERDPHKLFLLFKANATNRLLIENRIAFD 65
ST R F ++ +AAA +P +P + + ERDP + FK +N ++
Sbjct: 16 STHTNRRFFSAVTAAAATPSPPKPSLITLVNDERDPKFITEKFKKACQAEWFRKNIAVYE 75
Query: 66 DTVSRLAGARRFDYIXXXXXXXXXXPQARREGFIVRIIGLYGKVGMTQHALETFYHMD-- 123
TV RLA A++F+++ P +EGF+ RII LYG+VGM ++A + F M
Sbjct: 76 RTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPER 135
Query: 124 SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQE 183
+ +RT SFNA L +K FD V ++ K I DV S N ++K C G E
Sbjct: 136 NCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTE 195
Query: 184 AYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
A + E EN KG++PD +T+ L+ Y ++E G +W RMV K ++ ++NAR+
Sbjct: 196 AVALIDEIEN-KGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARL 254
>AT1G55890.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:20901364-20902560 FORWARD
LENGTH=398
Length = 398
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 9/242 (3%)
Query: 10 LRNFTTSAV------SAAAAKNPLQPPALDKLKAERDPHKLFLLFKANATNRLLIENRIA 63
+R F+++A + AA +P Q + ER+P ++ FK + N
Sbjct: 17 IRRFSSAATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKACESERFRTNIAV 76
Query: 64 FDDTVSRLAGARRFDYIXXXXXXXXXXPQARREGFIVRIIGLYGKVGMTQHALETFYHMD 123
+D TV RL A+R Y+ +EGF RII LYGK GM ++A + F M
Sbjct: 77 YDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMP 136
Query: 124 S--SRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKL 181
+ +R+V SFNA L +K FD V E + K I+ D+ S N ++KA C+ L
Sbjct: 137 NRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSL 196
Query: 182 QEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNA 241
EA + E EN KG++PD+VT+ TL+ + Y ++E+G +W +MV K ++ T+NA
Sbjct: 197 PEAVALLDEIEN-KGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNA 255
Query: 242 RV 243
R+
Sbjct: 256 RL 257
>AT4G36680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:17292479-17293717 REVERSE
LENGTH=412
Length = 412
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 8/248 (3%)
Query: 2 LSLRSTRRLRNFTTSAVSAAAAKNPLQ-PPALDKLKAERDPHKLFLLFKANATNRLL--I 58
+SLR RR + + A + + A L+ E DP K ++ AN ++ +
Sbjct: 6 ISLRLVRRFASAAADGTTTAPSSGKISVSKAKSTLRKEHDPDKALKIY-ANVSDHSASPV 64
Query: 59 ENRIAFDDTVSRLAGARRFDYIXXXXXXXXXXPQARREGFIVRIIGLYGKVGMTQHALET 118
+R A + TV RLA RRF I P+ + E F +I YG+ M HA+ T
Sbjct: 65 SSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPFYSTLIRSYGQASMFNHAMRT 124
Query: 119 FYHMDS--SRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFD-IRLDVYSINIVVKAF 175
F MD + R+ SFNA L +K+FD V + ++ +++ I D S I++K++
Sbjct: 125 FEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSY 184
Query: 176 CDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPN 235
CD G ++A M + + KG+ + +TT++++ Y+ E+ + LWN MV KGC +
Sbjct: 185 CDSGTPEKAIEIMRQMQG-KGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELD 243
Query: 236 LATFNARV 243
A +N R+
Sbjct: 244 NAAYNVRI 251
>AT2G18520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:8034036-8035292 REVERSE
LENGTH=418
Length = 418
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 9/244 (3%)
Query: 8 RRLRNFTT-SAVSAAAAKNP---LQPPALDKLKAERDPHKLFLLFKANATNRLL-IENRI 62
R LR F+T + + + P A KL+ +DP K ++K+ + N + +R
Sbjct: 9 RFLRRFSTATGIDSQTTAYPGAITMSKAKSKLRKVQDPDKALAIYKSVSNNSTSPLSSRY 68
Query: 63 AFDDTVSRLAGARRFDYIXXXXXXXXXXPQARREGFIVRIIGLYGKVGMTQHALETFYHM 122
A + TV RLA ++RF I P+ + E F+ +I YG+ M HA++ F M
Sbjct: 69 AMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETFLSTLIRSYGRASMFDHAMKMFEEM 128
Query: 123 D--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF-DIRLDVYSINIVVKAFCDMG 179
D + RTV SFNA L + F+ V + ++ ++ +I D S +++K++CD G
Sbjct: 129 DKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSG 188
Query: 180 KLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATF 239
K ++A M + E KG+ ++ +TT++ + Y++ + LW MV KGC + +
Sbjct: 189 KPEKAMEIMRDMEV-KGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVY 247
Query: 240 NARV 243
N R+
Sbjct: 248 NVRL 251
>AT3G13150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4227975-4229630 REVERSE
LENGTH=551
Length = 551
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 68 VSRLAGARRFDYIXXXXXXXXXXPQARREGFIVRIIGLYGKVGMTQHALETFYHMD--SS 125
+ RL A++F I + E F++RI+ LYG GM +HA + F M +
Sbjct: 94 IRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELNC 153
Query: 126 RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY 185
RTVKSFNA L +K D ++ ++ K I D+ + N ++KA C G + +
Sbjct: 154 ERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDD-I 212
Query: 186 LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHF 245
L + E G PD++++ TL+ FY+ + G+ +W+ M K PN+ ++N+RV
Sbjct: 213 LSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRG 272
Query: 246 LVCARRAWDANAVMGLM 262
L ++ DA ++ +M
Sbjct: 273 LTRNKKFTDALNLIDVM 289
>AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336 |
chr1:22865326-22866552 REVERSE LENGTH=408
Length = 408
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 10/268 (3%)
Query: 4 LRSTRRLRNFTT-SAVSAAAAKNPL-----QPPALDKLKAERDPHKLFLLFKANATNRLL 57
L ++ ++R+ ++ S + + +K PL AL LK+E+DP ++ + +A +
Sbjct: 17 LNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPDRILEICRAASLTPDC 76
Query: 58 IENRIAFDDTVSRLAGARRFDYIXXXXXX-XXXXPQARREGFIVRIIGLYGKVGMTQHAL 116
+RIAF V LA + F + P + E F I LY + M H+L
Sbjct: 77 RIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAHAIVLYAQANMLDHSL 136
Query: 117 ETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKA 174
F ++ RTVKS NA L K + + + I D+ + N ++K
Sbjct: 137 RVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKV 196
Query: 175 FCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMP 234
FC+ G +Y + E E KGI+P+ ++ +I+ FY + + + M +G
Sbjct: 197 FCESGSASSSYSIVAEMER-KGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDRGVNI 255
Query: 235 NLATFNARVHFLVCARRAWDANAVMGLM 262
++T+N R+ L +++ +A A++ M
Sbjct: 256 GVSTYNIRIQSLCKRKKSKEAKALLDGM 283
>AT3G14580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:4903012-4904229 FORWARD
LENGTH=405
Length = 405
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 96/234 (41%), Gaps = 41/234 (17%)
Query: 68 VSRLAGARRFDYIXXXXXXXXXXPQAR-REGFIVRIIGLYGKV-GMTQHALETFYHMD-- 123
+++ A+ +D I + R E F ++ +YG + G A+E + M
Sbjct: 102 INKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDF 161
Query: 124 SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKA--------- 174
+ KSFN L +L K FD + + A K + +D +NI++K
Sbjct: 162 GCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAP-KLGVEIDACCLNILIKGLCESGNLEA 220
Query: 175 --------------------------FCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLI 208
FC+ GK +EA+ + E ++ I PD +T+ LI
Sbjct: 221 ALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKER-IEPDTITFNILI 279
Query: 209 AAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
+ + R E G L RM +KGC PN T+ ++ L+ +R +A +M M
Sbjct: 280 SGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQM 333
>AT1G62720.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:23227574-23229031 FORWARD
LENGTH=485
Length = 485
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDI 161
II Y + G A E F MDS R +++++ L L + + E K +I
Sbjct: 355 IIQGYFQAGRPDAAQEIFSRMDS-RPNIRTYSILLYGLCMNWRVEKALVLFENMQ-KSEI 412
Query: 162 RLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGN 221
LD+ + NIV+ C +G +++A+ + S + KG++PDVV+YTT+I+ F + R+W+ +
Sbjct: 413 ELDITTYNIVIHGMCKIGNVEDAW-DLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSD 471
Query: 222 GLWNRMVLKGCMP 234
L+ +M G +P
Sbjct: 472 LLYRKMQEDGLLP 484
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
II K+G+ A+E F M D R ++N+ + L + + + ++
Sbjct: 180 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR- 238
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
DI +V + V+ F GK EA + + E + + PDV TY +LI H R +
Sbjct: 239 DIVPNVITFTAVIDVFVKEGKFSEA-MKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDE 297
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRA 252
+ + MV KGC+P++ T+N ++ ++R
Sbjct: 298 AKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRV 330
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFM 188
V +F A + V + F ++ E+ + + + DV++ N ++ C G++ EA M
Sbjct: 244 VITFTAVIDVFVKEGKFSEAMKLYEEMTRRC-VDPDVFTYNSLINGLCMHGRVDEAKQ-M 301
Query: 189 LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
L+ KG PDVVTY TLI F + +R + G L+ M +G + + T+N +
Sbjct: 302 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQ 357
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 7/173 (4%)
Query: 92 QARREGFIVRIIGLYGKVGMTQH---ALETFYHMDSSR--RTVKSFNATLKVLAQTKHFD 146
Q+R IV + K+ +++ + F+HM+ + S+N + L + F
Sbjct: 62 QSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFV 121
Query: 147 YVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTT 206
+ + + +KF DV +++ ++ FC ++ +A + ++ + G RPDVV Y T
Sbjct: 122 IALSVVGKM-MKFGYEPDVVTVSSLINGFCQGNRVFDA-IDLVSKMEEMGFRPDVVIYNT 179
Query: 207 LIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVM 259
+I + L++RM G + T+N+ V L C+ R DA +M
Sbjct: 180 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLM 232
>AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 |
chr1:19312078-19314145 REVERSE LENGTH=650
Length = 650
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 107 GKVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLD 164
GK+ H + F M D + ++N + + D + E+ + D + D
Sbjct: 453 GKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE-RSDCKPD 511
Query: 165 VYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
+ S N ++ G + EA++ E + +KG+ PDVVTY+TL+ F + R E+ L+
Sbjct: 512 IISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPDVVTYSTLMECFGKTERVEMAYSLF 570
Query: 225 NRMVLKGCMPNLATFN 240
M++KGC PN+ T+N
Sbjct: 571 EEMLVKGCQPNIVTYN 586
>AT1G07740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2399117-2400496 REVERSE
LENGTH=459
Length = 459
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 97/237 (40%), Gaps = 15/237 (6%)
Query: 30 PALDKLKAERDPHKLFLLFKANATNRLLIENRIAFDDTVSRLAGARRFDYIXXXXXXXXX 89
P L LK DP + LF + ++ + +LA +R FD +
Sbjct: 51 PFLTDLKEIEDPEEALSLFH-QYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRY 109
Query: 90 XPQARREGFIVRIIGLYGKVGMTQHALETFYHMDS--SRRTVKSFNATLKVLAQTKHFDY 147
RE + +I YGK G A++ F+ + S RT++S N + VL +
Sbjct: 110 RNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEK 169
Query: 148 VVEFLEQASLKFDIRL--DVYSINIVVKAF---CDMGKLQEAYLFMLESENDKGIRPDVV 202
F + A D+RL + S NI++K F CD + + MLE E ++P VV
Sbjct: 170 AKSFFDGAK---DMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEME----VQPSVV 222
Query: 203 TYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVM 259
TY +LI ++ L M+ K PN TF + L C +A +M
Sbjct: 223 TYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLM 279
>AT1G74580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28020777-28023068 FORWARD
LENGTH=763
Length = 763
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 27/255 (10%)
Query: 27 LQPPALDK-----LKAERDPHKLFLLFKANATNRLLIENRIAFDDTVSRLAGA-RRFDYI 80
+ PP L K +K ++DP K +F + + + F T+S + Y
Sbjct: 1 MGPPLLPKHVTAVIKCQKDPMKALEMFNS-------MRKEVGFKHTLSTYRSVIEKLGYY 53
Query: 81 XXXXXXXXXXPQARR-------EGFIVRIIGLYGKVGMTQHALETFYHMD--SSRRTVKS 131
R EG V + YG+ G Q A+ F MD TV S
Sbjct: 54 GKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFS 113
Query: 132 FNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLES 191
+NA + VL + +FD + + + I DVYS I +K+FC + A L +L +
Sbjct: 114 YNAIMSVLVDSGYFDQAHKVYMRMRDR-GITPDVYSFTIRMKSFCKTSRPHAA-LRLLNN 171
Query: 192 ENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARR 251
+ +G +VV Y T++ FY+ G L+ +M+ G L+TFN + L +
Sbjct: 172 MSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLC---K 228
Query: 252 AWDANAVMGLMGRVL 266
D L+ +V+
Sbjct: 229 KGDVKECEKLLDKVI 243
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
D+++ NI++ + K++ A L +L+ D G+ PDV TY +L+ + ++E
Sbjct: 460 DIFTFNILIHGYSTQLKMENA-LEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMET 518
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
+ MV KGC PNL TFN + L C R D
Sbjct: 519 YKTMVEKGCAPNLFTFNILLESL-CRYRKLD 548
>AT5G16420.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:5368034-5369641 FORWARD
LENGTH=535
Length = 535
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 5/199 (2%)
Query: 70 RLAGARRFDYIXXXXXXX--XXXPQARREGFIVRIIGLYGKVGMTQHALETFYHMD--SS 125
+L+ AR FD + P E + ++ YG G + ++ F +
Sbjct: 92 KLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGV 151
Query: 126 RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY 185
+R+V+S N L VL Q + FD V + + F I ++++ N++VKA C ++ AY
Sbjct: 152 KRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAY 211
Query: 186 LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHF 245
+L+ G+ P++VTYTT++ + E + M+ +G P+ T+ +
Sbjct: 212 K-VLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDG 270
Query: 246 LVCARRAWDANAVMGLMGR 264
R +A VM M +
Sbjct: 271 YCKLGRFSEAATVMDDMEK 289
>AT1G11630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:3913168-3914385 REVERSE
LENGTH=405
Length = 405
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 118/261 (45%), Gaps = 7/261 (2%)
Query: 9 RLRNFTTS--AVSAAAAKNPLQPPALDKLKAERDPHKLFLLFKANATNRLLIENRIAFDD 66
RL++ ++S + + +K L LK+E +P ++ + ++ + + +RI F
Sbjct: 21 RLKSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPDRILEICRSTSLSPDYHVDRIIFSV 80
Query: 67 TVSRLAGARRFDYIXXXXXX-XXXXPQARREGFIVRIIGLYGKVGMTQHALETFYHMDSS 125
V LA + F + P + E F VR I LYG+ M +++TF +++
Sbjct: 81 AVVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQY 140
Query: 126 R--RTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQE 183
RTVKS NA L K + + + I D+ + N +++ C+ G
Sbjct: 141 EIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSS 200
Query: 184 AYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
+Y + E E K I+P ++ +I FY+ +++ + M G +AT+N +
Sbjct: 201 SYSIVAEMER-KWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMI 259
Query: 244 HFLVCARRAWDANAVM-GLMG 263
L +++ +A A++ G+M
Sbjct: 260 QCLCKRKKSAEAKALIDGVMS 280
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFM 188
V S+NA L ++K E + + L+ + +V++ NI+++ FC G + A L +
Sbjct: 169 VLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA-LTL 227
Query: 189 LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVC 248
+ KG P+VVTY TLI + + R+ + G L M LKG PNL ++N ++ L
Sbjct: 228 FDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCR 287
Query: 249 ARRAWDANAVMGLMGR 264
R + + V+ M R
Sbjct: 288 EGRMKEVSFVLTEMNR 303
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 128 TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLF 187
+V ++NA + T + + LE K + DV S + V+ FC + EA L
Sbjct: 414 SVVTYNALINGHCVTGKMEDAIAVLEDMKEK-GLSPDVVSYSTVLSGFCRSYDVDEA-LR 471
Query: 188 MLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
+ +KGI+PD +TY++LI F + RR + L+ M+ G P+ T+ A ++
Sbjct: 472 VKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528
>AT1G63080.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23388884-23390728 REVERSE
LENGTH=614
Length = 614
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 40/179 (22%)
Query: 113 QHALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINI 170
A++ F M SR ++ F+ L +A+ K FD V+ F E+ + + ++Y+ NI
Sbjct: 47 DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEI-LGVSHNLYTYNI 105
Query: 171 VVK-----------------------------------AFCDMGKLQEAYLFMLESENDK 195
++ FC ++ EA + +++ +
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA-VALVDQMVEM 164
Query: 196 GIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
G +PD VT+TTL+ +QH + L RMV+KGC P+L T+ A ++ L C R D
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGL-CKRGEPD 222
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 115 ALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
AL F MD+ R V ++++ + L + L L+ I +V + N ++
Sbjct: 259 ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM-LERKINPNVVTFNSLI 317
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
AF GKL EA + + + I P++VTY +LI F H R + ++ MV K C
Sbjct: 318 DAFAKEGKLIEAEK-LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 376
Query: 233 MPNLATFNARVHFLVCARRAWDA 255
+P++ T+N ++ A++ D
Sbjct: 377 LPDVVTYNTLINGFCKAKKVVDG 399
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
++ A + L + D + L + K I DV + V+ + C + +A E
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKME-KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
+N KGIRPDV TY++LI+ + RW + L + M+ + PN+ TFN+ +
Sbjct: 266 MDN-KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLI 317
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 123 DSSRRTVKSFNATLKVLAQTKHFD---YVVEFLEQASLKFDIRLDVYSINIVVKAFCDMG 179
D + ++N L L + + V E+L+++ ++ DI Y+ NI+ + C G
Sbjct: 444 DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDI----YTYNIMSEGMCKAG 499
Query: 180 KLQEAY-LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLAT 238
K+++ + LF S + KG++PDV+ Y T+I+ F + E L+ +M G +P+ T
Sbjct: 500 KVEDGWDLFC--SLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGT 557
Query: 239 FNA--RVHF 245
+N R H
Sbjct: 558 YNTLIRAHL 566
>AT1G12700.1 | Symbols: | ATP binding;nucleic acid
binding;helicases | chr1:4323722-4326227 REVERSE
LENGTH=735
Length = 735
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 7/150 (4%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A+ F M SR ++ F+ +A+TK F+ V++F +Q L I ++Y++NI++
Sbjct: 72 AIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELN-GIAHNIYTLNIMI 130
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
FC K AY +L G PD T+ TLI + + L +RMV GC
Sbjct: 131 NCFCRCCKTCFAY-SVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189
Query: 233 MPNLATFNARVHFLVCARRAWDANAVMGLM 262
P++ T+N+ V+ + R+ D + + L+
Sbjct: 190 QPDVVTYNSIVNGIC---RSGDTSLALDLL 216
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 8/167 (4%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVK----SFNATLKVLAQTKHFDYVVEFLEQASL 157
I+ + G T AL+ M+ R VK +++ + L + D + ++
Sbjct: 199 IVNGICRSGDTSLALDLLRKME--ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 256
Query: 158 KFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRW 217
K I+ V + N +V+ C GK + L +L+ + I P+V+T+ L+ F + +
Sbjct: 257 K-GIKSSVVTYNSLVRGLCKAGKWNDGAL-LLKDMVSREIVPNVITFNVLLDVFVKEGKL 314
Query: 218 EIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGR 264
+ N L+ M+ +G PN+ T+N + R +AN ++ LM R
Sbjct: 315 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR 361
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
II + G A+ F M++ + +V ++N+ ++ L + ++ L+ +
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM-VSR 292
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+I +V + N+++ F GKLQEA E +GI P+++TY TL+ + R
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMIT-RGISPNIITYNTLMDGYCMQNRLSE 351
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAV 258
N + + MV C P++ TF + + +R D V
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKV 390
>AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308423 FORWARD
LENGTH=629
Length = 629
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A++ F M SR ++ FN L +A+ FD V+ E+ I D+YS NI++
Sbjct: 64 AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQ-NLRISYDLYSYNILI 122
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
FC +L A L +L G PD+VT ++L+ + +R L ++M +
Sbjct: 123 NCFCRRSQLPLA-LAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY 181
Query: 233 MPNLATFNARVHFLVCARRAWDANAVMGLM 262
PN TFN +H L +A +A A++ M
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRM 211
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 148 VVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTT 206
V E+L+++ ++ DI Y+ NI+++ C GK+++ + LF S + KG++P+V+ YTT
Sbjct: 487 VFEYLQKSKMEPDI----YTYNIMIEGMCKAGKVEDGWDLFC--SLSLKGVKPNVIIYTT 540
Query: 207 LIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
+I+ F + E + L+ M G +PN T+N +
Sbjct: 541 MISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLI 577
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 115 ALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
AL F MD+ R V ++N+ ++ L + L ++ I +V + + ++
Sbjct: 274 ALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALI 332
Query: 173 KAFCDMGKLQEA---YLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVL 229
AF GKL EA Y M++ + I PD+ TY++LI F H R + ++ M+
Sbjct: 333 DAFVKEGKLVEAEKLYDEMIK----RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 388
Query: 230 KGCMPNLATFNARVHFLVCARRAWDA 255
K C PN+ T+N + A+R +
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEG 414
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
++ + L + D + L++ K I DV ++ A C+ + +A E
Sbjct: 222 TYGTVVNGLCKRGDIDLALSLLKKME-KGKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLV 247
+N KGIRP+VVTY +LI + RW + L + M+ + PN+ TF+A + V
Sbjct: 281 MDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 336
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 150 EFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIA 209
E L +K I D+++ + ++ FC +L EA M E K P+VVTY TLI
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK-HMFELMISKDCFPNVVTYNTLIK 403
Query: 210 AFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFL 246
F + +R E G L+ M +G + N T+N + L
Sbjct: 404 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
>AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:3218133-3219929 FORWARD
LENGTH=598
Length = 598
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 3/163 (1%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDI 161
+I Y K G +AL M S V ++N L+ L + +E L++ L+ D
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVSPDVV-TYNTILRSLCDSGKLKQAMEVLDRM-LQRDC 235
Query: 162 RLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGN 221
DV + I+++A C + A + +L+ D+G PDVVTY L+ + R +
Sbjct: 236 YPDVITYTILIEATCRDSGVGHA-MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294
Query: 222 GLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGR 264
N M GC PN+ T N + + R DA ++ M R
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
DV + N++V C G+L EA F L G +P+V+T+ ++ + RW L
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKF-LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL 331
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRVL 266
M+ KG P++ TFN ++FL C + GL+GR +
Sbjct: 332 LADMLRKGFSPSVVTFNILINFL-CRK---------GLLGRAI 364
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 128 TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLF 187
+V +FN + L + ++ LE+ + + + S N ++ FC K+ A +
Sbjct: 343 SVVTFNILINFLCRKGLLGRAIDILEKMP-QHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401
Query: 188 MLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLV 247
LE +G PD+VTY T++ A + + E + N++ KGC P L T+N + L
Sbjct: 402 -LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460
Query: 248 CARRAWDA 255
A + A
Sbjct: 461 KAGKTGKA 468
>AT2G17670.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:7674420-7675575 FORWARD
LENGTH=349
Length = 349
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 100 VRIIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
VR + G+V + ++ S T ++N LK L + K V EF+++ F
Sbjct: 166 VRSLCETGRVDEAKDLMKELTEKHSPPDTY-TYNFLLKHLCKCKDLHVVYEFVDEMRDDF 224
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
D++ D+ S I++ C+ L+EA ++++ + G +PD Y T++ F +
Sbjct: 225 DVKPDLVSFTILIDNVCNSKNLREA-MYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSE 283
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
G++ +M +G P+ T+N + L A R +A + M
Sbjct: 284 AVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTM 326
>AT2G17670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:7674420-7675811 FORWARD
LENGTH=463
Length = 463
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 2/172 (1%)
Query: 91 PQARREGFIVRIIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVE 150
P VR + G+V + ++ S T ++N LK L + K V E
Sbjct: 157 PDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTY-TYNFLLKHLCKCKDLHVVYE 215
Query: 151 FLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAA 210
F+++ FD++ D+ S I++ C+ L+EA ++++ + G +PD Y T++
Sbjct: 216 FVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREA-MYLVSKLGNAGFKPDCFLYNTIMKG 274
Query: 211 FYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
F + G++ +M +G P+ T+N + L A R +A + M
Sbjct: 275 FCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTM 326
>AT3G04760.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:1303884-1305692 REVERSE
LENGTH=602
Length = 602
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 108 KVGMTQHALETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQA-SLKFDIRLD 164
K GM A E +++ V S+N L+ L ++ + + + S K D +
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334
Query: 165 VYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
YSI ++ C GK++EA + +L+ +KG+ PD +Y LIAAF + R ++
Sbjct: 335 TYSI--LITTLCRDGKIEEA-MNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFL 391
Query: 225 NRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
M+ GC+P++ +N + L +A A + G +G V
Sbjct: 392 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEV 432
>AT1G06710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2056999-2060242 REVERSE
LENGTH=997
Length = 997
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
DVY+ I+V +FC G +++A + E + G P+VVTYT LI A+ + ++ N L
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEM-REVGCTPNVVTYTALIHAYLKAKKVSYANEL 575
Query: 224 WNRMVLKGCMPNLATFNARV 243
+ M+ +GC+PN+ T++A +
Sbjct: 576 FETMLSEGCLPNIVTYSALI 595
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 126 RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY 185
R + ++N ++ + D + SL ++R+D +++ + C +GK +EA
Sbjct: 232 RPSRSTYNCLIQAFLKADRLDSASLIHREMSLA-NLRMDGFTLRCFAYSLCKVGKWREA- 289
Query: 186 LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNA 241
L ++E+EN PD V YT LI+ + +E NRM C+PN+ T++
Sbjct: 290 LTLVETEN---FVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYST 342
>AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:25723247-25725439 REVERSE
LENGTH=730
Length = 730
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
+VYS I+V FC +GK+ EAY + E D G++P+ V + LI+AF + R +
Sbjct: 423 NVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGFNCLISAFCKEHRIPEAVEI 481
Query: 224 WNRMVLKGCMPNLATFNARVHFLV 247
+ M KGC P++ TFN+ + L
Sbjct: 482 FREMPRKGCKPDVYTFNSLISGLC 505
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Query: 95 REGFIVRIIGLYGKVGMTQHALETFYHMD---SSRRTVKSFNATLKVLAQTKHFDYVVE- 150
+E + I+ Y K G M S T KS+N L++L
Sbjct: 145 KESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANV 204
Query: 151 FLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAA 210
F + S K I +++ +V+KAFC + ++ A L +L G P+ V Y TLI +
Sbjct: 205 FYDMLSRK--IPPTLFTFGVVMKAFCAVNEIDSA-LSLLRDMTKHGCVPNSVIYQTLIHS 261
Query: 211 FYQHRRWEIGNGLWNRMVLKGCMPNLATFN 240
+ R L M L GC+P+ TFN
Sbjct: 262 LSKCNRVNEALQLLEEMFLMGCVPDAETFN 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 106 YGKVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRL 163
+ K+G A M D + FN + + VE + K +
Sbjct: 434 FCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK-GCKP 492
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNG- 222
DVY+ N ++ C++ +++ A L++L +G+ + VTY TLI AF RR EI
Sbjct: 493 DVYTFNSLISGLCEVDEIKHA-LWLLRDMISEGVVANTVTYNTLINAFL--RRGEIKEAR 549
Query: 223 -LWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRVL 266
L N MV +G + T+N+ + L RA + + L ++L
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLC---RAGEVDKARSLFEKML 591
>AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16478860-16480443 REVERSE
LENGTH=527
Length = 527
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 113 QHALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINI 170
AL+ F HM SR ++ F L V+A+ K FD V+ + + + D+Y+ N+
Sbjct: 54 NEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQI-MGVSHDLYTCNL 112
Query: 171 VVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLK 230
++ FC + A F L G PD+VT+T+LI F R E + N+MV
Sbjct: 113 LMNCFCQSSQPYLASSF-LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171
Query: 231 GCMPNLATFNARVHFLV 247
G P++ + + L
Sbjct: 172 GIKPDVVMYTTIIDSLC 188
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFM 188
V + + L + H +Y + +Q + IR DV +V C+ G+ ++A +
Sbjct: 177 VVMYTTIIDSLCKNGHVNYALSLFDQME-NYGIRPDVVMYTSLVNGLCNSGRWRDAD-SL 234
Query: 189 LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
L + I+PDV+T+ LI AF + ++ L+N M+ PN+ T+ + ++
Sbjct: 235 LRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN 290
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 157 LKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRR 216
++ I+ DV ++ + C G + A L + + + GIRPDVV YT+L+ R
Sbjct: 169 VEMGIKPDVVMYTTIIDSLCKNGHVNYA-LSLFDQMENYGIRPDVVMYTSLVNGLCNSGR 227
Query: 217 WEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
W + L M + P++ TFNA + V + DA + M R+
Sbjct: 228 WRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRM 276
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
DV + ++ FC K+ +A E + KG+ + +TYTTLI F Q + + +
Sbjct: 316 DVVAYTSLINGFCKCKKVDDAMKIFYEM-SQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Query: 224 WNRMVLKGCMPNLATFNARVHFLV 247
++ MV +G PN+ T+N +H L
Sbjct: 375 FSHMVSRGVPPNIRTYNVLLHCLC 398
>AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23177294-23179198 REVERSE LENGTH=634
Length = 634
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 38/176 (21%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A+ F M SR ++ FN L +A+ K FD V+ E+ + +I +Y+ NI++
Sbjct: 69 AIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ-RLEIVHGLYTYNILI 127
Query: 173 KAFCD----------MGKLQ----EAYLFMLES--------------------ENDKGIR 198
FC +GK+ E + L S + G R
Sbjct: 128 NCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYR 187
Query: 199 PDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
PD +T+TTLI + H + L +RMV +GC PNL T+ V+ L C R D
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL-CKRGDTD 242
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
I DV N ++ + C + +A E E KGIRP+VVTY++LI+ + RW
Sbjct: 256 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMET-KGIRPNVVTYSSLISCLCSYGRWSDA 314
Query: 221 NGLWNRMVLKGCMPNLATFNARVHFLV 247
+ L + M+ K PNL TFNA + V
Sbjct: 315 SQLLSDMIEKKINPNLVTFNALIDAFV 341
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 110 GMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYS 167
G +A + F M D + +++ L L + +E + K +I+LD+Y
Sbjct: 449 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ-KSEIKLDIYI 507
Query: 168 INIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNR 226
+++ C GK+ + + LF S + KG++P+VVTY T+I+ R + L +
Sbjct: 508 YTTMIEGMCKAGKVDDGWDLFC--SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 565
Query: 227 MVLKGCMPNLATFNA--RVHF 245
M G +PN T+N R H
Sbjct: 566 MKEDGPLPNSGTYNTLIRAHL 586
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 115 ALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
AL F M++ R V ++++ + L + + L ++ I ++ + N ++
Sbjct: 279 ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALI 337
Query: 173 KAFCDMGKLQEA---YLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVL 229
AF GK EA Y M++ + I PD+ TY +L+ F H R + ++ MV
Sbjct: 338 DAFVKEGKFVEAEKLYDDMIK----RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393
Query: 230 KGCMPNLATFNARVHFLVCARRAWDA 255
K C P++ T+N + ++R D
Sbjct: 394 KDCFPDVVTYNTLIKGFCKSKRVEDG 419
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
+FNA + + F E L +K I D+++ N +V FC +L +A M E
Sbjct: 332 TFNALIDAFVKEGKF-VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ-MFE 389
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFL 246
K PDVVTY TLI F + +R E G L+ M +G + + T+ + L
Sbjct: 390 FMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445
>AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE LENGTH=590
Length = 590
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 165 VYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
+ ++N ++ FC ++ EA + +++ + G +PD VT+TTL+ +QH + L
Sbjct: 145 IVTLNSLLNGFCHGNRISEA-VALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALV 203
Query: 225 NRMVLKGCMPNLATFNARVHFLVCARRAWD 254
RMV+KGC P+L T+ A ++ L C R D
Sbjct: 204 ERMVVKGCQPDLVTYGAVINGL-CKRGEPD 232
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 123 DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQ 182
D + ++N L L + + + E K D++LD+ + +++A C GK++
Sbjct: 420 DGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQ-KRDMKLDIVTYTTMIEALCKAGKVE 478
Query: 183 EAY-LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNA 241
+ + LF S + KG++P+VVTYTT+++ F + E + L+ M G +PN T+N
Sbjct: 479 DGWDLFC--SLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNT 536
Query: 242 RV 243
+
Sbjct: 537 LI 538
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%)
Query: 157 LKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRR 216
L+ +I D+ N ++ AF GKL EA E K PDVV Y TLI F +++R
Sbjct: 312 LEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKR 371
Query: 217 WEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
E G ++ M +G + N T+ +H AR +A V M
Sbjct: 372 VEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 417
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
++ A + L + D + L + K I DV N ++ C + +A+ +
Sbjct: 217 TYGAVINGLCKRGEPDLALNLLNKME-KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNK 275
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLV 247
E KGI+PDV TY LI+ + RW + L + M+ K P+L FNA + V
Sbjct: 276 MET-KGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A+ F M SR ++ F+ L +A+ FD V+ EQ I ++Y+ +I +
Sbjct: 59 AIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSIFI 117
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
FC +L A L +L G P +VT +L+ F R L ++MV G
Sbjct: 118 NYFCRRSQLSLA-LAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGY 176
Query: 233 MPNLATFNARVHFLVCARRAWDANAVM 259
P+ TF VH L +A +A A++
Sbjct: 177 QPDTVTFTTLVHGLFQHNKASEAVALV 203
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 132 FNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLES 191
+N + L + KH D + + K I+ DV++ N ++ C+ G+ +A +L
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETK-GIKPDVFTYNPLISCLCNYGRWSDASR-LLSD 310
Query: 192 ENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMV-LKGCMPNLATFNARV 243
+K I PD+V + LI AF + + L++ MV K C P++ +N +
Sbjct: 311 MLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLI 363
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
DV + N ++K FC +++E + + + +G+ + VTYTTLI F+Q R + +
Sbjct: 355 DVVAYNTLIKGFCKYKRVEEG-MEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 413
Query: 224 WNRMVLKGCMPNLATFN 240
+ +MV G P++ T+N
Sbjct: 414 FKQMVSDGVHPDIMTYN 430
>AT1G63400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23507320-23509053 FORWARD
LENGTH=577
Length = 577
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 38/176 (21%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A+ F M SR ++ FN L +A+ K FD V+ E+ + I ++Y+ NI++
Sbjct: 69 AIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ-RLGISHNLYTYNILI 127
Query: 173 KAFCD----------MGKLQ----EAYLFMLES--------------------ENDKGIR 198
FC +GK+ E + L S + G R
Sbjct: 128 NCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYR 187
Query: 199 PDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
PD +T+TTLI + H + L +RMV +GC PNL T+ V+ L C R D
Sbjct: 188 PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL-CKRGDID 242
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 115 ALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
AL F M++ R V ++++ + L + + L ++ I +V + N ++
Sbjct: 279 ALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM-IERKINPNVVTFNALI 337
Query: 173 KAFCDMGKLQEA---YLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVL 229
AF GKL EA Y M++ + I PD+ TY++LI F H R + ++ M+
Sbjct: 338 DAFVKEGKLVEAEKLYDEMIK----RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 393
Query: 230 KGCMPNLATFNARVHFLVCARR 251
K C PN+ T+N ++ A+R
Sbjct: 394 KDCFPNVVTYNTLINGFCKAKR 415
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
I +V + V+ + C +A E EN KG+RP+V+TY++LI+ + RW
Sbjct: 256 IEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN-KGVRPNVITYSSLISCLCNYERWSDA 314
Query: 221 NGLWNRMVLKGCMPNLATFNARVHFLV 247
+ L + M+ + PN+ TFNA + V
Sbjct: 315 SRLLSDMIERKINPNVVTFNALIDAFV 341
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 123 DSSRRTVKSFNATLKVLAQTKHFD---YVVEFLEQASLKFDIRLDVYSINIVVKAFCDMG 179
D + ++N L L + + V E+L+++ ++ I Y+ NI+++ C G
Sbjct: 464 DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI----YTYNIMIEGMCKAG 519
Query: 180 KLQEAY-LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLAT 238
K+++ + LF S + KG++PDV+ Y T+I+ F + E + L+ +M G +P+ T
Sbjct: 520 KVEDGWDLFC--SLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 128 TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLF 187
V +FNA + + E L +K I D+++ + ++ FC +L EA
Sbjct: 329 NVVTFNALIDAFVKEGKL-VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK-H 386
Query: 188 MLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLV 247
M E K P+VVTY TLI F + +R + G L+ M +G + N T+ +H
Sbjct: 387 MFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFF 446
Query: 248 CARRAWDANAVMGLM 262
AR +A V M
Sbjct: 447 QARDCDNAQMVFKQM 461
>AT3G09060.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2766367-2768430 REVERSE
LENGTH=687
Length = 687
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 41/264 (15%)
Query: 27 LQPP-ALDKLKAERDPHKLFLLFKANATNRLLIENRIAFDDTVSRLAGARRFDYIXXXXX 85
L P L LK+E++P F LF + + + + + + RL+ R +++
Sbjct: 8 LSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVE 67
Query: 86 XXXXXPQARREGFIVRIIGLYGKVGMTQHALETFYHMD---SSRRTVKSFNATLKVLAQT 142
E + +I YGK M AL+ F M ++S+N L +
Sbjct: 68 LIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEA 127
Query: 143 KHF---DYVVEFLEQASL-------------------------------KFDIRLDVYSI 168
K + + + + E A + K + DV+S
Sbjct: 128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSY 187
Query: 169 NIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMV 228
+ V+ GKL +A L + + +++G+ PDV Y LI F + + + LW+R++
Sbjct: 188 STVINDLAKAGKLDDA-LELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLL 246
Query: 229 LKGCM-PNLATFNARVHFLV-CAR 250
+ PN+ T N + L C R
Sbjct: 247 EDSSVYPNVKTHNIMISGLSKCGR 270
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 13/153 (8%)
Query: 111 MTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINI 170
M++H +E H+ NA + L + FL + K R V S NI
Sbjct: 455 MSKHGVELNSHV---------CNALIGGLIRDSRLGEASFFLREMG-KNGCRPTVVSYNI 504
Query: 171 VVKAFCDMGKLQEAYLFMLES-ENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVL 229
++ C GK EA F+ E EN G +PD+ TY+ L+ + R+ ++ LW++ +
Sbjct: 505 LICGLCKAGKFGEASAFVKEMLEN--GWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQ 562
Query: 230 KGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
G ++ N +H L + DA VM M
Sbjct: 563 SGLETDVMMHNILIHGLCSVGKLDDAMTVMANM 595
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFM 188
+K+++ L L + + D +E Q L+ + DV NI++ C +GKL +A M
Sbjct: 534 LKTYSILLCGLCRDRKIDLALELWHQF-LQSGLETDVMMHNILIHGLCSVGKLDDAMTVM 592
Query: 189 LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVC 248
E+ + ++VTY TL+ F++ +W M G P++ ++N + L
Sbjct: 593 ANMEH-RNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCM 651
Query: 249 AR 250
R
Sbjct: 652 CR 653
>AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23489840-23491519 FORWARD
LENGTH=559
Length = 559
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 36/161 (22%)
Query: 128 TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCD---------- 177
++ FN L +A+ K FD V+ E+ + I ++Y+ NI++ FC
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLVISLGEKMQ-RLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 178 MGKLQ----EAYLFMLES--------------------ENDKGIRPDVVTYTTLIAAFYQ 213
+GK+ E + L S + G RPD +T+TTLI +
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 214 HRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
H + L +RMV +GC PNL T+ V+ L C R D
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL-CKRGDID 167
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
I DV N ++ + C + +A E E KGIRP+VVTY++LI+ + RW
Sbjct: 181 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMET-KGIRPNVVTYSSLISCLCSYGRWSDA 239
Query: 221 NGLWNRMVLKGCMPNLATFNARVHFLV 247
+ L + M+ K PNL TFNA + V
Sbjct: 240 SQLLSDMIEKKINPNLVTFNALIDAFV 266
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 8/141 (5%)
Query: 110 GMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYS 167
G +A + F M D + +++ L L + +E + K +I+LD+Y
Sbjct: 374 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ-KSEIKLDIYI 432
Query: 168 INIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNR 226
+++ C GK+ + + LF S + KG++P+VVTY T+I+ R + L +
Sbjct: 433 YTTMIEGMCKAGKVDDGWDLFC--SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 490
Query: 227 MVLKGCMPNLATFNA--RVHF 245
M G +P+ T+N R H
Sbjct: 491 MKEDGPLPDSGTYNTLIRAHL 511
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 115 ALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
AL F M++ R V ++++ + L + + L ++ I ++ + N ++
Sbjct: 204 ALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALI 262
Query: 173 KAFCDMGKLQEAYLFMLESEND----KGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMV 228
AF GK EA E +D + I PD+ TY +LI F H R + ++ MV
Sbjct: 263 DAFVKEGKFVEA-----EKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 317
Query: 229 LKGCMPNLATFNARVHFLVCARRAWDA 255
K C P+L T+N + ++R D
Sbjct: 318 SKDCFPDLDTYNTLIKGFCKSKRVEDG 344
>AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4294883-4296748 REVERSE
LENGTH=621
Length = 621
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQ-TKHFDYVVEFLEQASL--- 157
II K G +A F M+ +K F A + + + F Y + + A L
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEME-----IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRD 307
Query: 158 --KFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHR 215
K I DV + + ++ F GKL+EA E +GI PD VTYT+LI F +
Sbjct: 308 MIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ-RGISPDTVTYTSLIDGFCKEN 366
Query: 216 RWEIGNGLWNRMVLKGCMPNLATFNARVH 244
+ + N + + MV KGC PN+ TFN ++
Sbjct: 367 QLDKANHMLDLMVSKGCGPNIRTFNILIN 395
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 115 ALETFYHMDSSRRTVK--SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A++ F M SR + F+ V+A+TK +D V++ +Q LK I ++Y+++I++
Sbjct: 56 AVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELK-GIAHNLYTLSIMI 114
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
C KL A+ M + G PD VT++TLI R L +RMV G
Sbjct: 115 NCCCRCRKLSLAFSAMGKIIK-LGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173
Query: 233 MPNLATFNARVHFLVCARRAWDA 255
P L T NA V+ L + DA
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDA 196
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
++ LKV+ ++ +E L + + I+LD +I++ C G L A+ E
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKMEER-KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 272
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLV 247
E KG + D++ YTTLI F RW+ G L M+ + P++ F+A + V
Sbjct: 273 MEI-KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFV 328
>AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:42114-44303 REVERSE
LENGTH=729
Length = 729
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
+ ++VY++NI+V A C GK+++ F+ + + +KG+ PD+VTY TLI+A+ E
Sbjct: 231 VGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ-EKGVYPDIVTYNTLISAYSSKGLMEEA 289
Query: 221 NGLWNRMVLKGCMPNLATFNARVHFLV 247
L N M KG P + T+N ++ L
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLC 316
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 10/156 (6%)
Query: 94 RREGFIVRI------IGLYGKVGMTQHALETFYHMDSSRR--TVKSFNATLKVLAQTKHF 145
R +GF V I IG ++G + A + + S V + N + L +
Sbjct: 192 RSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKM 251
Query: 146 DYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYT 205
+ V FL Q K + D+ + N ++ A+ G ++EA+ M + KG P V TY
Sbjct: 252 EKVGTFLSQVQEK-GVYPDIVTYNTLISAYSSKGLMEEAFELM-NAMPGKGFSPGVYTYN 309
Query: 206 TLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNA 241
T+I +H ++E ++ M+ G P+ T+ +
Sbjct: 310 TVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 345
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
D Y++ I++ C +G LQ A + + + +K IR DVVTY TL+ F + + +
Sbjct: 479 DSYTLTILIDGHCKLGNLQNA-MELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEI 537
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCAR-------RAWD 254
W MV K +P +++ V+ L C++ R WD
Sbjct: 538 WADMVSKEILPTPISYSILVNAL-CSKGHLAEAFRVWD 574
>AT1G12300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4184163-4186076 REVERSE
LENGTH=637
Length = 637
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRT--VKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
II K G +A F M+ T + ++N + +D + L +K
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM-IKR 327
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
I +V + ++++ +F GKL+EA E + +GI PD +TYT+LI F + +
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH-RGIAPDTITYTSLIDGFCKENHLDK 386
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
N + + MV KGC PN+ TFN ++ A R D
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDG 422
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A++ F M SR TV F+ +A+TK +D V+ +Q LK I ++Y+++I++
Sbjct: 72 AIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELK-GIAHNLYTLSIMI 130
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
FC KL A+ M + G P+ +T++TLI R L +RMV G
Sbjct: 131 NCFCRCRKLCLAFSAMGKIIK-LGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH 189
Query: 233 MPNLATFNARVHFLVCARRAWDA 255
P+L T N V+ L + + +A
Sbjct: 190 KPDLITINTLVNGLCLSGKEAEA 212
>AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4353906-4355840 FORWARD
LENGTH=644
Length = 644
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
++ L V+ ++ +E L + + +I+LD +I++ C G L A+ E
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEER-NIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 288
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCAR 250
E KG + D++TY TLI F RW+ G L M+ + PN+ TF+ + V
Sbjct: 289 MEI-KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEG 347
Query: 251 RAWDANAVMGLM 262
+ +A+ ++ M
Sbjct: 348 KLREADQLLKEM 359
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
II K G +A F M+ + + ++N + +D + L +K
Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM-IKR 327
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
I +V + ++++ +F GKL+EA + E +GI P+ +TY +LI F + R E
Sbjct: 328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQ-RGIAPNTITYNSLIDGFCKENRLEE 386
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
+ + M+ KGC P++ TFN ++ A R D
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDG 422
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Query: 107 GKVGM-TQHALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRL 163
G VG+ A++ F M SR TV FN +A+TK ++ V+ +Q K I
Sbjct: 63 GLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESK-GIAH 121
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
+Y+++I++ FC KL A+ M + G PD V + TL+ R L
Sbjct: 122 SIYTLSIMINCFCRCRKLSYAFSTMGKIMK-LGYEPDTVIFNTLLNGLCLECRVSEALEL 180
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
+RMV G P L T N V+ L + DA
Sbjct: 181 VDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 8/165 (4%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVK----SFNATLKVLAQTKHFDYVVEFLEQASL 157
++ + K G T A+E M+ R +K ++ + L + D + +
Sbjct: 234 VLNVMCKSGQTALAMELLRKME--ERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 291
Query: 158 KFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRW 217
K + D+ + N ++ FC+ G+ + +L + I P+VVT++ LI +F + +
Sbjct: 292 K-GFKADIITYNTLIGGFCNAGRWDDGAK-LLRDMIKRKISPNVVTFSVLIDSFVKEGKL 349
Query: 218 EIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
+ L M+ +G PN T+N+ + R +A ++ LM
Sbjct: 350 READQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLM 394
>AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:654102-656561 FORWARD
LENGTH=819
Length = 819
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRT--VKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
++ +YG+ M A +M T + ++N+ + + +++ F E L + K
Sbjct: 635 MVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAK- 693
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
I+ D+ S N V+ A+C ++++A E N GI PDV+TY T I ++ +E
Sbjct: 694 GIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRN-SGIVPDVITYNTFIGSYAADSMFEE 752
Query: 220 GNGLWNRMVLKGCMPNLATFNARV 243
G+ M+ GC PN T+N+ V
Sbjct: 753 AIGVVRYMIKHGCRPNQNTYNSIV 776
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 113 QHALETFYHMDSSRRTVK--SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINI 170
Q A + F M ++ + ++NA L V ++ ++ L + L + + N
Sbjct: 296 QEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN-GFSPSIVTYNS 354
Query: 171 VVKAFCDMGKLQEAYLFMLESEN---DKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRM 227
++ A+ G L EA +E +N +KG +PDV TYTTL++ F + + E ++ M
Sbjct: 355 LISAYARDGMLDEA----MELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEM 410
Query: 228 VLKGCMPNLATFNA 241
GC PN+ TFNA
Sbjct: 411 RNAGCKPNICTFNA 424
>AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23301576-23303162 FORWARD LENGTH=528
Length = 528
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 157 LKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRR 216
+K D+ ++N ++ FC ++ +A + +++ + G +PD VT+TTLI + H +
Sbjct: 140 MKLGYEPDIVTLNSLLNGFCHGNRISDA-VALVDQMVEMGYKPDTVTFTTLIHGLFLHNK 198
Query: 217 WEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
L +RMV +GC P+L T+ A V+ L C R D
Sbjct: 199 ASEAVALIDRMVQRGCQPDLVTYGAVVNGL-CKRGDTD 235
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQ-ASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFML 189
++ A + L + D + L + + K + + +YS V+ + C +A
Sbjct: 220 TYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYST--VIDSLCKYRHEDDALNLFT 277
Query: 190 ESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLV 247
E EN KG+RP+V+TY++LI+ + RW + L + M+ + PNL TF+A + V
Sbjct: 278 EMEN-KGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFV 334
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 150 EFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIA 209
E L + +K I ++++ + ++ FC + +L EA MLE K P+VVTY TLI
Sbjct: 343 EKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQ-MLELMIRKDCLPNVVTYNTLIN 401
Query: 210 AFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
F + +R + G L+ M +G + N T+ +H AR +A V M V
Sbjct: 402 GFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 457
>AT3G48810.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:18097048-18099027 FORWARD
LENGTH=659
Length = 659
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 11/203 (5%)
Query: 48 FKANATNRLLIENRIAFDDTVSRLAGARRFDYIXXXXXXXXXXPQARREGFIVRIIGLYG 107
FK+ A + L + F+ + +LA + D + E + +I +Y
Sbjct: 63 FKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYR 122
Query: 108 KVGMTQHALETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFD-IRLD 164
+VG+ + A+E FY + +VK +N L L + ++ +K D +
Sbjct: 123 QVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMI--YMVYRDMKRDGFEPN 180
Query: 165 VYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
V++ N+++KA C K+ A ++E N KG PD V+YTT+I++ + + G L
Sbjct: 181 VFTYNVLLKALCKNNKVDGAKKLLVEMSN-KGCCPDAVSYTTVISSMCEVGLVKEGRELA 239
Query: 225 NRMVLKGCMPNLATFNARVHFLV 247
R P ++ +NA ++ L
Sbjct: 240 ERF-----EPVVSVYNALINGLC 257
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 159 FDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
F ++ +V + N +V+ FC G + +A E + G P++ TY +LI F + +
Sbjct: 346 FGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHME-EIGCSPNIRTYGSLINGFAKRGSLD 404
Query: 219 IGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGR 264
+WN+M+ GC PN+ + V L + +A +++ +M +
Sbjct: 405 GAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSK 450
>AT5G46100.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:18694316-18695734 REVERSE
LENGTH=472
Length = 472
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 6/236 (2%)
Query: 23 AKNPLQPPALDKLKAERDPHKLFLLFKANATNRL--LIENRIAFDDTVSRLAGARRFDYI 80
+KN + ++AE+D K +F + + ++ +F V RL A +F
Sbjct: 11 SKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAA 70
Query: 81 XXXXXXXXXXPQARREGFIVRIIGLYGKVGMTQHALETFYHMDS--SRRTVKSFNATLKV 138
E ++ I YG+V +L F+ M + K++ L +
Sbjct: 71 EDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAI 130
Query: 139 LAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIR 198
L + + +F + + + V S+N+++KA C +A L + +G
Sbjct: 131 LVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCD 189
Query: 199 PDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
PD TY TLI+ + R + L+ MV K C P + T+ + ++ L C + D
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL-CGSKNVD 244
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 91 PQARREGFIVRIIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVE 150
P + G ++ + +G++ + D + TV ++ + + L +K+ D +
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAP-TVVTYTSLINGLCGSKNVDEAMR 248
Query: 151 FLEQASLKFDIRLDVYSINIVVKAFCDMGK-LQEAYLFMLESENDKGIRPDVVTYTTLIA 209
+LE+ K I +V++ + ++ C G+ LQ LF E +G RP++VTYTTLI
Sbjct: 249 YLEEMKSK-GIEPNVFTYSSLMDGLCKDGRSLQAMELF--EMMMARGCRPNMVTYTTLIT 305
Query: 210 AFYQHRRWEIGNGLWNRMVLKGCMPNLATFN 240
+ ++ + L +RM L+G P+ +
Sbjct: 306 GLCKEQKIQEAVELLDRMNLQGLKPDAGLYG 336
>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
chr1:23204773-23206665 REVERSE LENGTH=630
Length = 630
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 100 VRIIGLYGKVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFD---YVVEFLEQ 154
+ I GL+ + G A E F M D + ++N L L + + V E+L++
Sbjct: 436 ILIQGLF-QAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR 494
Query: 155 ASLKFDIRLDVYSINIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTTLIAAFYQ 213
+ ++ I Y+ NI+++ C GK+++ + LF S KG++PDVV Y T+I+ F +
Sbjct: 495 SKMEPTI----YTYNIMIEGMCKAGKVEDGWDLFCNLSL--KGVKPDVVAYNTMISGFCR 548
Query: 214 HRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
E + L+ M G +PN +N +
Sbjct: 549 KGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A+ F M SR ++ F+ L +A+ FD V+ EQ I + Y+ +I++
Sbjct: 65 AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILI 123
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
FC +L A L +L G P++VT ++L+ + +R L ++M + G
Sbjct: 124 NCFCRRSQLPLA-LAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY 182
Query: 233 MPNLATFNARVHFLVCARRAWDANAVMGLM 262
PN TFN +H L +A +A A++ M
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEAMALIDRM 212
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 115 ALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
AL F M++ R V ++++ + L + L ++ I DV++ + ++
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-IERKINPDVFTFSALI 333
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
AF GKL EA E + I P +VTY++LI F H R + ++ MV K C
Sbjct: 334 DAFVKEGKLVEAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392
Query: 233 MPNLATFNARVHFLVCARRAWDANAVM------GLMGRVL 266
P++ T+N + +R + V GL+G +
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 432
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 157 LKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRR 216
+K ++ +++ ++ +C ++ EA + +++ G +P+ VT+ TLI + H +
Sbjct: 143 MKLGYEPNIVTLSSLLNGYCHSKRISEA-VALVDQMFVTGYQPNTVTFNTLIHGLFLHNK 201
Query: 217 WEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
L +RMV KGC P+L T+ V+ L C R D
Sbjct: 202 ASEAMALIDRMVAKGCQPDLVTYGVVVNGL-CKRGDTD 238
>AT1G63150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23419399-23421288 FORWARD
LENGTH=629
Length = 629
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 115 ALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A++ F M++ R V ++N+ + L + L L+ I +V + N ++
Sbjct: 277 AVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNM-LEKKINPNVVTFNALI 335
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
AF GKL EA + E + I PD +TY LI F H R + ++ MV K C
Sbjct: 336 DAFFKEGKLVEAEK-LHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDC 394
Query: 233 MPNLATFNARVHFLVCARRAWDA 255
+PN+ T+N ++ +R D
Sbjct: 395 LPNIQTYNTLINGFCKCKRVEDG 417
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 17/159 (10%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSR--RTVKSFNATLKVLAQTKHFD---YVVEFLEQAS 156
II + + G A F M S+R + +++ L L D + ++L+++
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKS- 497
Query: 157 LKFDIRLDVYSINIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTTLIAAFYQHR 215
++ L+++ N +++ C GK+ EA+ LF S I+PDVVTY T+I+ R
Sbjct: 498 ---EMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS-----IKPDVVTYNTMISGLCSKR 549
Query: 216 RWEIGNGLWNRMVLKGCMPNLATFNA--RVHFLVCARRA 252
+ + L+ +M G +PN T+N R + C R A
Sbjct: 550 LLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAA 588
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
I+ +V N ++ + C ++ A E E KGIRP+VVTY +LI + RW
Sbjct: 254 IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMET-KGIRPNVVTYNSLINCLCNYGRWSDA 312
Query: 221 NGLWNRMVLKGCMPNLATFNARV 243
+ L + M+ K PN+ TFNA +
Sbjct: 313 SRLLSNMLEKKINPNVVTFNALI 335
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 38/176 (21%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A++ F M SR ++ FN L +A+ F+ V+ EQ I D+Y+ +I +
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQ-TLGISHDLYTYSIFI 125
Query: 173 KAFCDMGKLQEAY-----LFMLESEND-----------------------------KGIR 198
FC +L A + L E D G +
Sbjct: 126 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK 185
Query: 199 PDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
PD T+TTLI + H + L ++MV +GC P+L T+ V+ L C R D
Sbjct: 186 PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGL-CKRGDID 240
>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:19900303-19902567 FORWARD
LENGTH=754
Length = 754
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFM 188
V +FN+ ++ L T++ +E E+ K D ++ N+++ + C GKL EA L M
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMRSK-GCEPDEFTYNMLIDSLCSKGKLDEA-LNM 457
Query: 189 LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVC 248
L+ G V+TY TLI F + + +++ M + G N T+N + L
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517
Query: 249 ARRAWDANAVMGLM 262
+RR DA +M M
Sbjct: 518 SRRVEDAAQLMDQM 531
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 108 KVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDV 165
K G +HA+E M + V ++N+ + L + VE L+Q + D +
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM-ITRDCSPNT 365
Query: 166 YSINIVVKAFCDMGKLQEAYLF--MLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
+ N ++ C +++EA +L S KGI PDV T+ +LI R + L
Sbjct: 366 VTYNTLISTLCKENQVEEATELARVLTS---KGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
+ M KGC P+ T+N + L C++ D
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSL-CSKGKLD 452
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 102 IIGLYGKVGMTQHALETFYHMDS---SRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLK 158
+I + K T+ A E F M+ SR +V ++N + L +++ + + ++Q ++
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSV-TYNTLIDGLCKSRRVEDAAQLMDQMIME 534
Query: 159 FDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
+ D Y+ N ++ FC G +++A ++++ G PD+VTY TLI+ + R E
Sbjct: 535 GQ-KPDKYTYNSLLTHFCRGGDIKKAA-DIVQAMTSNGCEPDIVTYGTLISGLCKAGRVE 592
Query: 219 IGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
+ + L + +KG +N + L R+ +A
Sbjct: 593 VASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEA 629
>AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Pentatricopeptide repeat (PPR) superfamily
protein (TAIR:AT5G46100.1); Has 40053 Blast hits to
12380 proteins in 263 species: Archae - 4; Bacteria -
27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses
- 0; Other Eukaryotes - 935 (source: NCBI BLink). |
chr4:575843-577243 REVERSE LENGTH=466
Length = 466
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Query: 91 PQARREGFIVRIIGLYGKVGMTQHALETFYHMDSSR-----RTVKSFNATLKVLAQTKHF 145
PQ + I+ + L G Q A E F SSR +S+N ++
Sbjct: 152 PQPKHLNRILDV--LVSHRGYLQKAFELF---KSSRLHGVMPNTRSYNLLMQAFCLNDDL 206
Query: 146 DYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYT 205
+ + L+ D+ DV S I+++ FC G++ A + +L+ +KG PD ++YT
Sbjct: 207 SIAYQLFGKM-LERDVVPDVDSYKILIQGFCRKGQVNGA-MELLDDMLNKGFVPDRLSYT 264
Query: 206 TLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
TL+ + + + L RM LKGC P+L +N + RA DA V+ M
Sbjct: 265 TLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDM 321
>AT1G52620.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:19603828-19606287 FORWARD
LENGTH=819
Length = 819
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
D + DV + NI++ C GK + A F+ E+ + KG+ P+ ++Y LI A+ + + ++I
Sbjct: 340 DCKPDVATYNILINRLCKEGKKEVAVGFLDEA-SKKGLIPNNLSYAPLIQAYCKSKEYDI 398
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
+ L +M +GC P++ T+ +H LV + DA
Sbjct: 399 ASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDA 434
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 156 SLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHR 215
S++ +++DV N ++K FC G L EA L + N++ + PD TY+T+I + + +
Sbjct: 511 SVEKGVKVDVVHHNAMIKGFCRSGMLDEA-LACMNRMNEEHLVPDKFTYSTIIDGYVKQQ 569
Query: 216 RWEIGNGLWNRMVLKGCMPNLATFNARVHFLVC 248
++ M C PN+ T+ + ++ C
Sbjct: 570 DMATAIKIFRYMEKNKCKPNVVTYTSLINGFCC 602
>AT2G15630.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:6814521-6816404 FORWARD
LENGTH=627
Length = 627
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 111 MTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSI 168
M A+E FY M ++ N L +L++ + F + +I+ +VY+
Sbjct: 170 MVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADM-YRMEIKSNVYTF 228
Query: 169 NIVVKAFCDMGKLQEA--YLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNR 226
NI++ C GKL++A +L ++E GI+P +VTY TL+ F R E + +
Sbjct: 229 NIMINVLCKEGKLKKAKGFLGIMEV---FGIKPTIVTYNTLVQGFSLRGRIEGARLIISE 285
Query: 227 MVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
M KG P++ T+N + ++ RA + M +G V
Sbjct: 286 MKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLV 324
>AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412854-23414746 FORWARD
LENGTH=630
Length = 630
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 9/101 (8%)
Query: 148 VVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTT 206
V E+L+++ ++ DI Y+ NI+++ C GK+++ + LF S + KG++P+VVTYTT
Sbjct: 488 VFEYLQRSKMEPDI----YTYNIMIEGMCKAGKVEDGWDLFC--SLSLKGVKPNVVTYTT 541
Query: 207 LIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNA--RVHF 245
+++ F + E + L+ M +G +P+ T+N R H
Sbjct: 542 MMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHL 582
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 115 ALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
AL F MD+ R V ++N+ ++ L + L ++ I +V + + ++
Sbjct: 275 ALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALI 333
Query: 173 KAFCDMGKLQEA---YLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVL 229
AF GKL EA Y M++ + I PD+ TY++LI F H R + ++ M+
Sbjct: 334 DAFVKEGKLVEAEKLYDEMIK----RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 389
Query: 230 KGCMPNLATFNARVHFLVCARRA 252
K C PN+ T+N + A+R
Sbjct: 390 KDCFPNVVTYNTLIKGFCKAKRV 412
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A+ F M SR ++ F+ L +A+ FD V+ EQ I ++Y+ +I++
Sbjct: 65 AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSILI 123
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
FC +L A L +L G PD+VT +L+ F R L +MV G
Sbjct: 124 NCFCRRSQLSLA-LAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGY 182
Query: 233 MPNLATFNARVHFLVCARRAWDANAVMGLM 262
P+ TFN +H L RA +A A++ M
Sbjct: 183 QPDSFTFNTLIHGLFRHNRASEAVALVDRM 212
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 157 LKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRR 216
+K D+ ++N ++ FC ++ +A + ++ + G +PD T+ TLI ++H R
Sbjct: 143 MKLGYEPDIVTLNSLLNGFCHGNRISDA-VSLVGQMVEMGYQPDSFTFNTLIHGLFRHNR 201
Query: 217 WEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
L +RMV+KGC P+L T+ V+ L C R D
Sbjct: 202 ASEAVALVDRMVVKGCQPDLVTYGIVVNGL-CKRGDID 238
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 169 NIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMV 228
N ++ A C+ + +A E +N KGIRP+VVTY +LI + RW + L + M+
Sbjct: 260 NTIIDALCNYKNVNDALNLFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318
Query: 229 LKGCMPNLATFNARVHFLV 247
+ PN+ TF+A + V
Sbjct: 319 ERKINPNVVTFSALIDAFV 337
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 150 EFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIA 209
E L +K I D+++ + ++ FC +L EA M E K P+VVTY TLI
Sbjct: 346 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK-HMFELMISKDCFPNVVTYNTLIK 404
Query: 210 AFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
F + +R + G L+ M +G + N T+ +H AR +A V M
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQM 457
>AT1G77405.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29087145-29088521 FORWARD
LENGTH=458
Length = 458
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 15/161 (9%)
Query: 99 IVRIIGLYGKVGMTQHALETFYHMDS--SRRTVKSFNATLKVLAQTKHFDYVVEFLEQAS 156
I ++ G+ G + AL TFY M + V ++N + L + +F L+Q
Sbjct: 168 ITCLMKCLGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQ 227
Query: 157 LK-FDIRLDVYSINIVVKAFCDMG-----------KLQEAYLFMLESENDKGIRPDVVTY 204
L F D Y+ I++ ++C G ++ EA M +G PDVVTY
Sbjct: 228 LPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANR-MFREMLFRGFVPDVVTY 286
Query: 205 TTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHF 245
LI + R L+ M KGC+PN T+N+ + +
Sbjct: 287 NCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRY 327
>AT1G62910.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23299060-23300958 FORWARD
LENGTH=632
Length = 632
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A++ F M SR ++ FN L +A+ F+ V+ EQ I D+Y+ +I +
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQ-TLGISHDLYTYSIFI 125
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
FC +L A L +L G PD+VT ++L+ + +R L ++MV G
Sbjct: 126 NCFCRRSQLSLA-LAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGY 184
Query: 233 MPNLATFNARVHFLVCARRAWDANAVMGLM 262
P+ TF +H L +A +A A++ M
Sbjct: 185 KPDTFTFTTLIHGLFLHNKASEAVALVDQM 214
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
++ + L + D + L++ K I DV N ++ C + +A E
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKME-KGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE 283
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLV 247
+N KGIRPDV TY++LI+ + RW + L + M+ + PN+ TF+A + V
Sbjct: 284 MDN-KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV 339
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 148 VVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTT 206
V E+L++++++ DI Y+ NI+++ C GK+++ + LF S KG+ P+V+ Y T
Sbjct: 490 VFEYLQRSTMEPDI----YTYNIMIEGMCKAGKVEDGWELFCNLSL--KGVSPNVIAYNT 543
Query: 207 LIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
+I+ F + E + L +M G +PN T+N +
Sbjct: 544 MISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLI 580
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 150 EFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIA 209
E L +K I D+++ + ++ FC +L EA M E K P+VVTY+TLI
Sbjct: 348 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK-HMFELMISKDCFPNVVTYSTLIK 406
Query: 210 AFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
F + +R E G L+ M +G + N T+ +H AR +A V M V
Sbjct: 407 GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 462
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 115 ALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
AL F MD+ R V ++++ + L + L ++ I +V + + ++
Sbjct: 277 ALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALI 335
Query: 173 KAFCDMGKLQEA---YLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVL 229
AF GKL EA Y M++ + I PD+ TY++LI F H R + ++ M+
Sbjct: 336 DAFVKEGKLVEAEKLYDEMIK----RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 391
Query: 230 KGCMPNLATFNARVHFLVCARRAWDA 255
K C PN+ T++ + A+R +
Sbjct: 392 KDCFPNVVTYSTLIKGFCKAKRVEEG 417
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 132 FNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLES 191
+N + L + KH D + + K IR DV++ + ++ C+ G+ +A +L
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNK-GIRPDVFTYSSLISCLCNYGRWSDASR-LLSD 318
Query: 192 ENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARR 251
++ I P+VVT++ LI AF + + L++ M+ + P++ T+++ ++ R
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 378
Query: 252 AWDANAVMGLM 262
+A + LM
Sbjct: 379 LDEAKHMFELM 389
>AT1G62680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23208247-23209893 REVERSE
LENGTH=548
Length = 548
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 113 QHALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINI 170
A++ F M SR ++ FN L + + K +D V+ ++ + IR D+Y+ NI
Sbjct: 67 NDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEV-LGIRNDLYTFNI 125
Query: 171 VVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLK 230
V+ FC ++ A L +L G PD VT +L+ F + R L ++MV
Sbjct: 126 VINCFCCCFQVSLA-LSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184
Query: 231 GCMPNLATFNARVHFLVCARRAWDA 255
G P++ +NA + L +R DA
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDA 209
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVK---SFNATLKVLAQTKHFDYVVEFLEQASLK 158
+I + K + ++ F M S R V ++N ++ Q D EF Q
Sbjct: 336 LINGFCKAKRVEDGMKLFREM-SQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF- 393
Query: 159 FDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
F I D+++ NI++ CD G+L++A L + E + + D+VTYTT+I + + E
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKA-LVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVE 452
Query: 219 IGNGLWNRMVLKGCMPNLATFNARVHFLV 247
L+ + LKG P++ T+ + L
Sbjct: 453 EAWSLFCSLSLKGLKPDIVTYTTMMSGLC 481
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
D+ + N ++ + C ++ +A+ F E E KGIRP+VVTYT L+ RW L
Sbjct: 189 DIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGLCNSSRWSDAARL 247
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
+ M+ K PN+ T++A + V + +A + M R+
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM 289
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 126 RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY 185
R V ++ A + L + + L +K I +V + + ++ AF GK+ EA
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKKITPNVITYSALLDAFVKNGKVLEAK 280
Query: 186 LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHF 245
+ E I PD+VTY++LI H R + N +++ MV KGC+ ++ ++N ++
Sbjct: 281 -ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 339
Query: 246 LVCARRAWDA 255
A+R D
Sbjct: 340 FCKAKRVEDG 349
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 108 KVGMTQHALETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDV 165
+ G A E F MD + ++N L L + + E K ++ LD+
Sbjct: 377 QAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ-KREMDLDI 435
Query: 166 YSINIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
+ V++ C GK++EA+ LF S + KG++PD+VTYTT+++ L+
Sbjct: 436 VTYTTVIRGMCKTGKVEEAWSLFC--SLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 493
Query: 225 NRMVLKGCMPNLATFN 240
+M +G M N T +
Sbjct: 494 TKMKQEGLMKNDCTLS 509
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 109 VGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSI 168
V + +E Y D + ++NA + L +TK + +F ++ K IR +V +
Sbjct: 175 VSLVDKMVEIGYKPD-----IVAYNAIIDSLCKTKRVNDAFDFFKEIERK-GIRPNVVTY 228
Query: 169 NIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMV 228
+V C+ + +A +L K I P+V+TY+ L+ AF ++ + L+ MV
Sbjct: 229 TALVNGLCNSSRWSDAAR-LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287
Query: 229 LKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
P++ T+++ ++ L R +AN + LM
Sbjct: 288 RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
>AT4G26680.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:13454853-13456418 FORWARD
LENGTH=521
Length = 521
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 113 QHALETFYHMDSSR--RTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINI 170
++A +TF M TV+S NA + L D + F + + I + Y++N+
Sbjct: 185 RNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMR-RCKISPNPYTLNM 243
Query: 171 VVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLK 230
V+ +C GKL + + +L+ G R V+Y TLIA + L N M
Sbjct: 244 VMSGYCRSGKLDKG-IELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKS 302
Query: 231 GCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
G PN+ TFN +H A + +A+ V G M V
Sbjct: 303 GLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAV 337
>AT4G26680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:13454853-13456418 FORWARD
LENGTH=521
Length = 521
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 113 QHALETFYHMDSSR--RTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINI 170
++A +TF M TV+S NA + L D + F + + I + Y++N+
Sbjct: 185 RNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMR-RCKISPNPYTLNM 243
Query: 171 VVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLK 230
V+ +C GKL + + +L+ G R V+Y TLIA + L N M
Sbjct: 244 VMSGYCRSGKLDKG-IELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKS 302
Query: 231 GCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
G PN+ TFN +H A + +A+ V G M V
Sbjct: 303 GLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAV 337
>AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:26201012-26203759 REVERSE
LENGTH=915
Length = 915
Score = 57.4 bits (137), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
++Y+ N +V +C +G ++EA + + + G+ PD TYT+LI + Q + + +
Sbjct: 217 NIYTYNKMVNGYCKLGNVEEANQY-VSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCARR 251
+N M LKGC N + +H L ARR
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARR 303
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRL--DVYSINIVVKAFCDMGKLQEAYL 186
V ++N+ + ++ +FD L SL D L D ++ ++ + C +++EA
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLL---SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEA-C 517
Query: 187 FMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFL 246
+ +S KG+ P+VV YT LI + + + + + + +M+ K C+PN TFNA +H L
Sbjct: 518 DLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGL 577
Query: 247 VCA 249
CA
Sbjct: 578 -CA 579
Score = 52.8 bits (125), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRT--VKSFNATLKVLAQT---KHFDYVVEFLEQAS 156
+I Y K GM + A++ M+S + + +++N +K ++ K + + LE+
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKV 458
Query: 157 LKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRR 216
L DV + N ++ C G AY +L ND+G+ PD TYT++I + + +R
Sbjct: 459 LP-----DVVTYNSLIDGQCRSGNFDSAYR-LLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512
Query: 217 WEIGNGLWNRMVLKGCMPNLATFNARV 243
E L++ + KG PN+ + A +
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALI 539
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 165 VYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
V + +++K+ C + EA + E E + GI+P++ TYT LI + ++E L
Sbjct: 323 VRTYTVLIKSLCGSERKSEALNLVKEME-ETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381
Query: 225 NRMVLKGCMPNLATFNARVH 244
+M+ KG MPN+ T+NA ++
Sbjct: 382 GQMLEKGLMPNVITYNALIN 401
>AT1G73400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:27598106-27599812 FORWARD
LENGTH=568
Length = 568
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 103 IGLYGKVGMTQHALETFYHMDS-----SRRTVKSFNATLKVLAQTKHFDYVVEFLEQASL 157
I + + GM A + F M + S T K+F + LA+ + E + + +
Sbjct: 310 IDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFALMIVALAKNDKAEECFELIGRM-I 368
Query: 158 KFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRW 217
DV + V++ C K+ EAY F+ E N KG PD+VTY + ++R+
Sbjct: 369 STGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSN-KGYPPDIVTYNCFLRVLCENRKT 427
Query: 218 EIGNGLWNRMVLKGCMPNLATFN 240
+ L+ RMV C P++ T+N
Sbjct: 428 DEALKLYGRMVESRCAPSVQTYN 450
>AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:5690020-5691543 FORWARD
LENGTH=507
Length = 507
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 8/142 (5%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRT---VKSFNATLKVLAQTKHFDYVVEFLEQASLK 158
+I Y VG A E F M SSRR ++++N L L + + E K
Sbjct: 369 LIQGYCLVGRPDVAQEVFNQM-SSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMR-K 426
Query: 159 FDIRLDVYSINIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTTLIAAFYQHRRW 217
++ +++ + I+++ C +GK+++A+ LF S KG++P+V+TYTT+I+ F +
Sbjct: 427 REMDINIVTYTIIIQGMCKLGKVEDAFDLFC--SLFSKGMKPNVITYTTMISGFCRRGLI 484
Query: 218 EIGNGLWNRMVLKGCMPNLATF 239
+ L+ +M G +PN + +
Sbjct: 485 HEADSLFKKMKEDGFLPNESVY 506
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 37/177 (20%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQAS---------------- 156
AL+ F M SR ++ F L V+A+ +D V+ EQ
Sbjct: 67 ALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMH 126
Query: 157 ------------------LKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIR 198
+K D+ + ++ +C ++++A + + + G +
Sbjct: 127 CVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDA-IALFDQILGMGFK 185
Query: 199 PDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
P+VVTYTTLI ++R L+N+M G PN+ T+NA V L R DA
Sbjct: 186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 126 RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY 185
+ V ++ ++ L + +H ++ VE Q R +V + N +V C++G+ +A
Sbjct: 185 KPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGS-RPNVVTYNALVTGLCEIGRWGDA- 242
Query: 186 LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHF 245
++L + I P+V+T+T LI AF + + L+N M+ P++ T+ + ++
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302
Query: 246 LV 247
L
Sbjct: 303 LC 304
>AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:10868400-10870382 REVERSE
LENGTH=660
Length = 660
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 106 YGKVGMTQHALETFYHMDS---SRRTVKSFNATLKVLAQT-------KHFDYVVEFLEQA 155
YGK + A++ F+ M +R+VKSFN+ L V+ + +DYVV +
Sbjct: 122 YGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVV----NS 177
Query: 156 SLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHR 215
++ +I + S N+V+KA C + + A + + ++ PD TY TL+ +
Sbjct: 178 NMNMNISPNGLSFNLVIKALCKLRFVDRA-IEVFRGMPERKCLPDGYTYCTLMDGLCKEE 236
Query: 216 RWEIGNGLWNRMVLKGCMPNLATFNARVHFLV 247
R + L + M +GC P+ +N + L
Sbjct: 237 RIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLC 268
>AT1G30290.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:10670320-10672740 REVERSE
LENGTH=806
Length = 806
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Query: 101 RIIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLK 158
R++ Y + G + AL+ M + + N T+ V + + + FLE+ +
Sbjct: 247 RVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQV- 305
Query: 159 FDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
I +V + N +++ +CD+ +++EA + +LE + KG PD V+Y T++ + +R
Sbjct: 306 VGIVPNVVTYNCMIRGYCDLHRVEEA-IELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIV 364
Query: 219 IGNGLWNRMVLK-GCMPNLATFNARVHFLV 247
L +M + G +P+ T+N +H L
Sbjct: 365 EVRDLMKKMAKEHGLVPDQVTYNTLIHMLT 394
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
++N + +L + H D + FL+ A K R+D + +V A C G++ EA + E
Sbjct: 385 TYNTLIHMLTKHDHADEALWFLKDAQEK-GFRIDKLGYSAIVHALCKEGRMSEAKDLINE 443
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCAR 250
+ PDVVTYT ++ F + + L M G PN ++ A ++ +
Sbjct: 444 MLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTG 503
Query: 251 RAWDANAVMGL 261
++ +A +M +
Sbjct: 504 KSLEAREMMNM 514
>AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:5434142-5436244 FORWARD
LENGTH=642
Length = 642
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 98 FIVRIIGLYGKVGMTQHALETFYHMDSSR--RTVKSFNATLKVLAQTK-HFDYVVEFLEQ 154
F+ ++ + GKVG + F M R TV S+N +K L ++K H V + ++
Sbjct: 340 FLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDK 399
Query: 155 ASLKFD-IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQ 213
+K D + ++ +I++ +C ++++A L +LE ++KG P Y +LI A +
Sbjct: 400 --MKADSVSPSEFTYSILIDGYCKTNRVEKA-LLLLEEMDEKGFPPCPAAYCSLINALGK 456
Query: 214 HRRWEIGNGLWNRMVLKGCMPNLATFNARV------HFLVCAR 250
+R+E N L+ + N ++RV HF C +
Sbjct: 457 AKRYEAANELFKEL-----KENFGNVSSRVYAVMIKHFGKCGK 494
>AT1G09680.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:3134107-3135930 REVERSE
LENGTH=607
Length = 607
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 165 VYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
V S N ++ +C +G L E + + E + RPDV TY+ LI A + + + +GL+
Sbjct: 275 VVSFNTLINGYCKVGNLDEGFRLKHQMEKSR-TRPDVFTYSALINALCKENKMDGAHGLF 333
Query: 225 NRMVLKGCMPNLATFNARVH 244
+ M +G +PN F +H
Sbjct: 334 DEMCKRGLIPNDVIFTTLIH 353
>AT1G64580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:23985078-23986649 REVERSE
LENGTH=523
Length = 523
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
+V++ N ++ FC G L +A +M + KG PDVVTY TLI F + +R E G L
Sbjct: 288 NVFTYNSLINGFCIHGCLGDAK-YMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346
Query: 224 WNRMVLKGCMPNLATFNARVH 244
+ M +G + + T+N +H
Sbjct: 347 FCEMTYQGLVGDAFTYNTLIH 367
>AT1G03560.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:890428-892410 REVERSE
LENGTH=660
Length = 660
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVK--SFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I Y K G TQ A+E M++ ++ ++ F V ++ K
Sbjct: 263 MIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEK- 321
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
I++ ++ ++V+ C GKL E Y + E+ KG +P+V YT LI + + E
Sbjct: 322 GIQVPPHAFSLVIGGLCKEGKLNEGYT-VFENMIRKGSKPNVAIYTVLIDGYAKSGSVED 380
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
L +RM+ +G P++ T++ V+ L R +A
Sbjct: 381 AIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEA 416
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 108 KVGMTQHALETFYHMDSSRRTVKS--FNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDV 165
K G + AL+ F+ + S +++ + L + D E+ S K R D
Sbjct: 409 KNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTR-DS 467
Query: 166 YSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWN 225
Y N ++ AF K+ EA E ++G V TYT L++ ++ R E LW+
Sbjct: 468 YCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWD 527
Query: 226 RMVLKGCMPNLATFNA 241
M+ KG P A F A
Sbjct: 528 MMIDKGITPTAACFRA 543
>AT1G77340.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29068620-29069828 REVERSE
LENGTH=402
Length = 402
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
+V + +++ A C G+ EA + + + ++ GI+PD YT LI +F + +GL
Sbjct: 259 NVRTYTVLIDALCGSGQKSEA-MNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGL 317
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRVL 266
M+ G MPN+ T+NA + C + A MGL+ ++L
Sbjct: 318 LEHMLENGLMPNVITYNALIKGF-CKKNVHKA---MGLLSKML 356
>AT5G55840.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:22598038-22601688 FORWARD
LENGTH=1136
Length = 1136
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I +Y + GM Q +LE F M +V + NA L + ++ V FL++ LK
Sbjct: 169 LIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEM-LKR 227
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
I DV + NI++ C G +++ M + E G P +VTY T++ + + R++
Sbjct: 228 KICPDVATFNILINVLCAEGSFEKSSYLMQKMEKS-GYAPTIVTYNTVLHWYCKKGRFKA 286
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARR 251
L + M KG ++ T+N +H L + R
Sbjct: 287 AIELLDHMKSKGVDADVCTYNMLIHDLCRSNR 318
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 128 TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLF 187
T+ ++N L + F +E L+ K + DV + N+++ C ++ + YL
Sbjct: 267 TIVTYNTVLHWYCKKGRFKAAIELLDHMKSK-GVDADVCTYNMLIHDLCRSNRIAKGYL- 324
Query: 188 MLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
+L + I P+ VTY TLI F + I + L N M+ G PN TFNA +
Sbjct: 325 LLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALI 380
>AT5G15010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4857241-4858959 FORWARD
LENGTH=572
Length = 572
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 107 GKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVY 166
G VG+ +H + ++ M S S N LK+ + K K I D
Sbjct: 294 GNVGV-KHDVVSYSSMISCYSKGGSLNKVLKLFDRMK--------------KECIEPDRK 338
Query: 167 SINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNR 226
N VV A + EA M E +KGI P+VVTY +LI + R+ E +++
Sbjct: 339 VYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDE 398
Query: 227 MVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMG 263
M+ KG P + T++A + L ++ A M MG
Sbjct: 399 MLEKGLFPTIRTYHAFMRILRTGEEVFELLAKMRKMG 435
>AT1G31840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:11424006-11426528 FORWARD
LENGTH=840
Length = 840
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Query: 108 KVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDV 165
K G+ HA+ M S R V FN+ + + FD ++ + + I+ DV
Sbjct: 473 KQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGI-YGIKPDV 531
Query: 166 YSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWN 225
+ V++ G+L+EA LF+ G+ PD + Y TLI AF +H + IG L++
Sbjct: 532 ATFTTVMRVSIMEGRLEEA-LFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFD 590
Query: 226 RMVLKGCMPNLATFNARVHFLVCARRAWDAN 256
M ++A N +H L R DA+
Sbjct: 591 LMQRNKISADIAVCNVVIHLLFKCHRIEDAS 621
>AT3G22470.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:7966066-7967925 REVERSE
LENGTH=619
Length = 619
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 106 YGKVGMTQHALETFYHMDSSR--RTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRL 163
+ + G A E F M S +V ++ L L + +E E+ K + L
Sbjct: 430 FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ-KSRMTL 488
Query: 164 DVYSINIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNG 222
+ NI++ C+ K+ +A+ LF S +DKG++PDVVTY +I + +
Sbjct: 489 GIGIYNIIIHGMCNASKVDDAWSLFC--SLSDKGVKPDVVTYNVMIGGLCKKGSLSEADM 546
Query: 223 LWNRMVLKGCMPNLATFN--ARVHF 245
L+ +M GC P+ T+N R H
Sbjct: 547 LFRKMKEDGCTPDDFTYNILIRAHL 571
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 4/150 (2%)
Query: 108 KVGMTQHALETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDV 165
K G AL F M+ + V ++++ + L +D + L + + +I DV
Sbjct: 257 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM-IGRNIIPDV 315
Query: 166 YSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWN 225
+ + ++ F GKL EA E +GI PD +TY +LI F + N +++
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMIT-RGIAPDTITYNSLIDGFCKENCLHEANQMFD 374
Query: 226 RMVLKGCMPNLATFNARVHFLVCARRAWDA 255
MV KGC P++ T++ ++ A+R D
Sbjct: 375 LMVSKGCEPDIVTYSILINSYCKAKRVDDG 404
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 113 QHALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINI 170
A++ F M SR T FN +A+TK +D V+ F + L I D+Y++ I
Sbjct: 52 NDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELN-GIEHDMYTMTI 110
Query: 171 VVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLK 230
++ +C KL A+ +L G PD +T++TL+ F R L +RMV
Sbjct: 111 MINCYCRKKKLLFAF-SVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 231 GCMPNLATFNARVHFLVCARRAWDA 255
P+L T + ++ L R +A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEA 194
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
D + N ++ FC L EA M + KG PD+VTY+ LI ++ + +R + G L
Sbjct: 349 DTITYNSLIDGFCKENCLHEANQ-MFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 224 WNRMVLKGCMPNLATFNARV 243
+ + KG +PN T+N V
Sbjct: 408 FREISSKGLIPNTITYNTLV 427
>AT2G17525.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:7624178-7626058 FORWARD
LENGTH=626
Length = 626
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFM 188
V + ++VL +E LE+ K ++DV + N +VK +C +GK++ A F
Sbjct: 283 VVTVTKVMEVLCNEGRVSEALEVLERVESKGG-KVDVVACNTLVKGYCALGKMRVAQRFF 341
Query: 189 LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVC 248
+E E KG P+V TY LIA + + +N M N ATFN + L
Sbjct: 342 IEMER-KGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSI 400
Query: 249 ARRAWDANAVMGLM 262
R D ++ +M
Sbjct: 401 GGRTDDGLKILEMM 414
>AT1G79540.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:29920334-29922676 REVERSE
LENGTH=780
Length = 780
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDS--SRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I Y K+GM + A+E+F M R V ++N L+V+ + + F + + LK
Sbjct: 133 LISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKC 192
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+ ++Y+ I++ G+ +A M + +GI P+ VTYT LI+ Q +
Sbjct: 193 NCSPNLYTFGILMDGLYKKGRTSDAQK-MFDDMTGRGISPNRVTYTILISGLCQRGSADD 251
Query: 220 GNGLWNRMVLKGCMPNLATFNA 241
L+ M G P+ NA
Sbjct: 252 ARKLFYEMQTSGNYPDSVAHNA 273
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
I D Y N V+KA C G L+E LE + PD T+T LI + ++
Sbjct: 369 ISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESF-PDACTHTILICSMCRNGLVREA 427
Query: 221 NGLWNRMVLKGCMPNLATFNARVHFLV 247
++ + GC P++ATFNA + L
Sbjct: 428 EEIFTEIEKSGCSPSVATFNALIDGLC 454
>AT5G48730.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:19763152-19765136 FORWARD
LENGTH=508
Length = 508
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 17/172 (9%)
Query: 97 GFIVRIIGLYGKVGMTQHALETFYHMDSSRRTV--KSFNATLKVLAQTKHFDYVVEFLEQ 154
G V++I + GK + A E F M + V + + A + +++ FD LE+
Sbjct: 151 GIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLER 210
Query: 155 ASLKFDIRLDVYSINIVVKAFCDM---GKLQEAYLFMLESENDKGIRPDVVTYTTLIAAF 211
+ + DV++ +I++K+F + K+Q+ +L +GIRP+ +TY TLI A+
Sbjct: 211 MKSSHNCQPDVHTYSILIKSFLQVFAFDKVQD----LLSDMRRQGIRPNTITYNTLIDAY 266
Query: 212 YQHRRW-EIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
+ + + E+ + L + C P+ T N+ + RA+ N + +M
Sbjct: 267 GKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTL-------RAFGGNGQIEMM 311
>AT3G22670.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:8017771-8019459 REVERSE
LENGTH=562
Length = 562
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 113 QHALETFYHM-DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIV 171
+HA E F + D+ + ++FN + + + FD ++ + + DV +
Sbjct: 256 EHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVT-EFTPDVVTYTSF 314
Query: 172 VKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKG 231
V+A+C G + MLE + G P+VVTYT ++ + + ++ G++ +M G
Sbjct: 315 VEAYCKEGDFRRVNE-MLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDG 373
Query: 232 CMPNLATFNARVHFLVCARRAWDANAV 258
C+P+ +++ +H L R DA +
Sbjct: 374 CVPDAKFYSSLIHILSKTGRFKDAAEI 400
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 107 GKVGMTQHALETFYHMDSS---RRTVKSFNATLKVLAQTKHFDYVVE-FLEQASLKFD-I 161
K G A++ F M+ S + + N+ + L + ++ E FL+ FD I
Sbjct: 214 AKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKL----FDTI 269
Query: 162 RLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGN 221
+ D + NI++ FC K +A M++ PDVVTYT+ + A+ + + N
Sbjct: 270 KPDARTFNILIHGFCKARKFDDARA-MMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVN 328
Query: 222 GLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
+ M GC PN+ T+ +H L +++ +A V M
Sbjct: 329 EMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM 369
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRL-DVYSINIVVKAFCDMGKLQEAYLFML 189
++NA + VL + ++FD + E + + + + +L + +++ V++ GK +A L
Sbjct: 168 TYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFL 227
Query: 190 ESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCA 249
E E G++ D + +L+ A + E + ++ ++ P+ TFN +H A
Sbjct: 228 EMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKL-FDTIKPDARTFNILIHGFCKA 286
Query: 250 RRAWDANAVMGLM 262
R+ DA A+M LM
Sbjct: 287 RKFDDARAMMDLM 299
>AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29071983-29073536 REVERSE
LENGTH=517
Length = 517
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
++ YG + A++TF M+ S + V FN+ + + V L++ K
Sbjct: 313 LVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSK- 371
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+ + S NI+++ + G+ EA F + + K PD TYT +I F + + E
Sbjct: 372 GVTPNSKSCNIILRHLIERGEKDEA--FDVFRKMIKVCEPDADTYTMVIKMFCEKKEMET 429
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVM 259
+ +W M KG P++ TF+ ++ L C R V+
Sbjct: 430 ADKVWKYMRKKGVFPSMHTFSVLINGL-CEERTTQKACVL 468
>AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 |
chr4:15403020-15406358 FORWARD LENGTH=1112
Length = 1112
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 92 QARREGFIVR------IIGLYGKVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTK 143
+ R GF++ +I L K A+E + M + R +++++++ + L + +
Sbjct: 178 KMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRR 237
Query: 144 HFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVT 203
D V+ L++ ++ +VY+ I ++ GK+ EAY +L+ +D+G PDVVT
Sbjct: 238 DIDSVMGLLKEME-TLGLKPNVYTFTICIRVLGRAGKINEAYE-ILKRMDDEGCGPDVVT 295
Query: 204 YTTLIAAFYQHRRWEIGNGLWNRM 227
YT LI A R+ + ++ +M
Sbjct: 296 YTVLIDALCTARKLDCAKEVFEKM 319
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 3/163 (1%)
Query: 102 IIGLYGKVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I +GK G A F M + R +K+++ + L D + + ++ +
Sbjct: 932 LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK-ES 990
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+ DV N+++ +L+EA + E + +GI PD+ TY +LI E
Sbjct: 991 GLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEE 1050
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
++N + G PN+ TFNA + + + A AV M
Sbjct: 1051 AGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 108 KVGMTQHALETFYHMDSSRRTVKS--FNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDV 165
K G + A + FY + S +N +K ++ D ++ L + ++ DV
Sbjct: 480 KAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEM-MENGCEPDV 538
Query: 166 YSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWN 225
+N ++ ++ EA+ + + K ++P VVTY TL+A ++ + + L+
Sbjct: 539 IVVNSLINTLYKADRVDEAWKMFMRMKEMK-LKPTVVTYNTLLAGLGKNGKIQEAIELFE 597
Query: 226 RMVLKGCMPNLATFNA 241
MV KGC PN TFN
Sbjct: 598 GMVQKGCPPNTITFNT 613
>AT1G53330.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:19896027-19897442 FORWARD
LENGTH=471
Length = 471
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 126 RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY 185
R TV + + +K L Q + + ++A + I++D + ++ + G+ E
Sbjct: 220 RPTVHIYASLIKALCQIGELSFAFKLKDEA-YEGKIKVDAAIYSTLISSLIKAGRSNEVS 278
Query: 186 LFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFN 240
+ +LE ++KG +PD VTY LI F E N + + MV KG P++ ++N
Sbjct: 279 M-ILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYN 332
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 132 FNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLES 191
++ + L + + V LE+ S K + D + N+++ FC + E+ +L+
Sbjct: 261 YSTLISSLIKAGRSNEVSMILEEMSEK-GCKPDTVTYNVLINGFC-VENDSESANRVLDE 318
Query: 192 ENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHF 245
+KG++PDV++Y ++ F++ ++WE L+ M +GC P+ T + R+ F
Sbjct: 319 MVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPD--TLSYRIVF 370
>AT5G40400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:16166444-16168276 FORWARD
LENGTH=610
Length = 610
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
+FN V +F V +FLE+ + D+ + N +V ++C G+L+EA+ ++ +
Sbjct: 238 TFNILTNVFCNDSNFREVDDFLEKMEEE-GFEPDLVTYNTLVSSYCRRGRLKEAF-YLYK 295
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
+ + PD+VTYT+LI + R + ++RMV +G P+ ++N ++
Sbjct: 296 IMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIY 349
>AT5G18475.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:6129255-6130775 REVERSE
LENGTH=506
Length = 506
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 94/238 (39%), Gaps = 4/238 (1%)
Query: 31 ALDKLKAERDPHKLFLLFKANATNRLLIENRIAFDDTVSRLAGARRFDYIXXXXXXXXXX 90
A+ +K ERDP + +F + + N + + L ++F +
Sbjct: 59 AVSLMKRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYE 118
Query: 91 PQARREGFIVRIIGLYGKVGMTQHALETFYHMDSSRRTVKSFNA---TLKVLAQTKHFDY 147
+E + ++ + + + +E F + R S NA L +L + +
Sbjct: 119 TCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNL 178
Query: 148 VVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTL 207
+ L A ++ + NI+VK C G + A+L + E + P+ +TY+TL
Sbjct: 179 SRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTL 238
Query: 208 IAAFYQHRRWEIGNGLWNRMVLK-GCMPNLATFNARVHFLVCARRAWDANAVMGLMGR 264
+ + H R + L+ M+ K G P+ TFN ++ A A ++ M +
Sbjct: 239 MDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKK 296
>AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION |
chr2:16381647-16384250 FORWARD LENGTH=867
Length = 867
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRT--VKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
II + KVG T A+ET+ M + ++ V +F + + ++ D +E +
Sbjct: 596 IIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMK-SM 654
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+++LD+ + ++ FC ++ AY E + G+ P+V Y +LI+ F + +
Sbjct: 655 ELKLDLPAYGALIDGFCKKNDMKTAYTLFSELP-ELGLMPNVSVYNSLISGFRNLGKMDA 713
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLV 247
L+ +MV G +L T+ + L+
Sbjct: 714 AIDLYKKMVNDGISCDLFTYTTMIDGLL 741
>AT2G17140.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:7462820-7465740 FORWARD
LENGTH=874
Length = 874
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
+FN ++ L + D E ++ K + + ++ I+V+ +C G L + L +L
Sbjct: 149 TFNLLIRALCDSSCVDAARELFDEMPEK-GCKPNEFTFGILVRGYCKAG-LTDKGLELLN 206
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCAR 250
+ G+ P+ V Y T++++F + R + + +M +G +P++ TFN+R+ L
Sbjct: 207 AMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEG 266
Query: 251 RAWDANAVMGLM 262
+ DA+ + M
Sbjct: 267 KVLDASRIFSDM 278
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 106 YGKVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRL 163
+ KVG+ + A F + + +++S+N L+ L + F L+Q + K I
Sbjct: 301 FCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDK-GIGP 359
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFM-LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNG 222
+YS NI++ C +G L +A + L N G+ PD VTY L+ + + +
Sbjct: 360 SIYSYNILMDGLCKLGMLSDAKTIVGLMKRN--GVCPDAVTYGCLLHGYCSVGKVDAAKS 417
Query: 223 LWNRMVLKGCMPNLATFNARVHFL 246
L M+ C+PN T N +H L
Sbjct: 418 LLQEMMRNNCLPNAYTCNILLHSL 441
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAF-YQHRRWEI 219
++ D + NI + FC GK+ A+ + + E KG + TY +LI +++ +EI
Sbjct: 555 LQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEK-KGCHKSLETYNSLILGLGIKNQIFEI 613
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
+GL + M KG PN+ T+N + +L + DA ++ M
Sbjct: 614 -HGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEM 655
>AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active 2 |
chr1:28119237-28122314 REVERSE LENGTH=862
Length = 862
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 5/164 (3%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I L G+ G+ LE F M S R+V S+ A + + ++ +E L++ +
Sbjct: 147 MISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNE- 205
Query: 160 DIRLDVYSINIVVKAFCDMGKLQ-EAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
I + + N V+ A C G L E L + +GI+PD+VTY TL++A +
Sbjct: 206 KISPSILTYNTVINA-CARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGD 264
Query: 219 IGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
++ M G +P+L T++ V RR ++G M
Sbjct: 265 EAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEM 308
>AT3G07290.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:2321740-2324382 REVERSE
LENGTH=880
Length = 880
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 167 SINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNR 226
S +I++ C++G+L+EA+ + + +KG +P TYT LI A + L++
Sbjct: 268 SYSILIHGLCEVGRLEEAF-GLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDE 326
Query: 227 MVLKGCMPNLATFNARVHFLVCARRAWDANAV 258
M+ +GC PN+ T+ + L + +AN V
Sbjct: 327 MIPRGCKPNVHTYTVLIDGLCRDGKIEEANGV 358
>AT4G19440.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10602006-10604483 REVERSE
LENGTH=825
Length = 825
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
DVY + AFC GK++EA + E + G+ P+VVT+ T+I R++
Sbjct: 259 DVYLFTTAINAFCKGGKVEEAVKLFSKME-EAGVAPNVVTFNTVIDGLGMCGRYDEAFMF 317
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGR 264
+MV +G P L T++ V L A+R DA V+ M +
Sbjct: 318 KEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTK 358
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 12/217 (5%)
Query: 49 KANATNRLLIE--------NRIAFDDTVSRLAGARRFDYIXXXXXXXXXXPQARREGFIV 100
+A+ RLL E N+ +F + L FD + G +
Sbjct: 415 QADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLT 474
Query: 101 RIIGLYGKVGMTQHALETFYHMDSSRRTV--KSFNATLKVLAQTKHFDYVVEFLEQASLK 158
+I K G ALE ++ + V ++ NA L L + D +++ L
Sbjct: 475 TLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFR-IQKEILG 533
Query: 159 FDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
+D S N ++ C KL EA++F L+ +G++PD TY+ LI + + E
Sbjct: 534 RGCVMDRVSYNTLISGCCGKKKLDEAFMF-LDEMVKRGLKPDNYTYSILICGLFNMNKVE 592
Query: 219 IGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
W+ G +P++ T++ + A R +
Sbjct: 593 EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEG 629
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
S+N + K D FL++ +K ++ D Y+ +I++ +M K++EA F +
Sbjct: 542 SYNTLISGCCGKKKLDEAFMFLDEM-VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDD 600
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFN 240
+ + G+ PDV TY+ +I + R E G ++ M+ K PN +N
Sbjct: 601 CKRN-GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 649
>AT4G19440.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:10602006-10604483 REVERSE
LENGTH=825
Length = 825
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
DVY + AFC GK++EA + E + G+ P+VVT+ T+I R++
Sbjct: 259 DVYLFTTAINAFCKGGKVEEAVKLFSKME-EAGVAPNVVTFNTVIDGLGMCGRYDEAFMF 317
Query: 224 WNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGR 264
+MV +G P L T++ V L A+R DA V+ M +
Sbjct: 318 KEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTK 358
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 12/217 (5%)
Query: 49 KANATNRLLIE--------NRIAFDDTVSRLAGARRFDYIXXXXXXXXXXPQARREGFIV 100
+A+ RLL E N+ +F + L FD + G +
Sbjct: 415 QADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLT 474
Query: 101 RIIGLYGKVGMTQHALETFYHMDSSRRTV--KSFNATLKVLAQTKHFDYVVEFLEQASLK 158
+I K G ALE ++ + V ++ NA L L + D +++ L
Sbjct: 475 TLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFR-IQKEILG 533
Query: 159 FDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
+D S N ++ C KL EA++F L+ +G++PD TY+ LI + + E
Sbjct: 534 RGCVMDRVSYNTLISGCCGKKKLDEAFMF-LDEMVKRGLKPDNYTYSILICGLFNMNKVE 592
Query: 219 IGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
W+ G +P++ T++ + A R +
Sbjct: 593 EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEG 629
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 131 SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLE 190
S+N + K D FL++ +K ++ D Y+ +I++ +M K++EA F +
Sbjct: 542 SYNTLISGCCGKKKLDEAFMFLDEM-VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDD 600
Query: 191 SENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFN 240
+ + G+ PDV TY+ +I + R E G ++ M+ K PN +N
Sbjct: 601 CKRN-GMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYN 649
>AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23987202-23988740 REVERSE
LENGTH=512
Length = 512
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFM 188
V +N + L + + +E L + K + DV + N ++ C G+ +A M
Sbjct: 176 VVVYNTLIDGLCKNGELNIALELLNEMEKK-GLGADVVTYNTLLTGLCYSGRWSDAAR-M 233
Query: 189 LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVC 248
L + I PDVVT+T LI F + + L+ M+ PN T+N+ ++ L
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293
Query: 249 ARRAWDANAVMGLM 262
R +DA LM
Sbjct: 294 HGRLYDAKKTFDLM 307
>AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:20459238-20461504 FORWARD
LENGTH=723
Length = 723
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 171 VVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLK 230
+VK+FCD G +EA + E E KGIR + + Y TL+ A+ + E GL+ M K
Sbjct: 350 LVKSFCDEGLKEEALVIQTEMEK-KGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDK 408
Query: 231 GCMPNLATFN 240
G P+ AT+N
Sbjct: 409 GLKPSAATYN 418
>AT5G47360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:19214445-19215878 REVERSE
LENGTH=477
Length = 477
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 158 KFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKG---IRPDVVTYTTLIAAFYQH 214
K D L+ + + +++ C G ++ A + E E + G I P+ VTYT +I AF +
Sbjct: 228 KHDCVLNSVTYSRILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEK 287
Query: 215 RRWEIGNGLWNRMVLKGCMPNLAT 238
RR E + +RM +GCMPN T
Sbjct: 288 RRVEEALLVLDRMGNRGCMPNRVT 311
>AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain
protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659
Length = 659
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 102 IIGLYGKVGMTQHALETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+IG +G++G+ ++ + F + + + + +NA + L ++ D + +L+ ++
Sbjct: 151 LIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLD--LAYLKFQQMRS 208
Query: 160 D-IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
D + D ++ NI++ C G + EA + + E + G RP+V TYT LI F R +
Sbjct: 209 DGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQE-GNRPNVFTYTILIDGFLIAGRVD 267
Query: 219 IGNGLWNRMVLKGCMPNLATFNARVH 244
M ++ PN AT VH
Sbjct: 268 EALKQLEMMRVRKLNPNEATIRTFVH 293
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 125 SRRTVKSFNATL---KVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKL 181
SR FN L + L + F +L+Q + + VYS N V+ C ++
Sbjct: 383 SRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVD-GLLSSVYSYNAVIDCLCKARRI 441
Query: 182 QEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNA 241
+ A +F+ E + D+GI P++VT+ T ++ + + +G+ ++++ G P++ TF+
Sbjct: 442 ENAAMFLTEMQ-DRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSL 500
Query: 242 RVHFLVCARRAWDA 255
++ L A+ DA
Sbjct: 501 IINCLCRAKEIKDA 514
>AT5G59900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24123983-24126706 REVERSE
LENGTH=907
Length = 907
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 169 NIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMV 228
N++++ FC G+++EA + D G+ PD +TYTT+I + + LWN M
Sbjct: 791 NMLIRGFCRQGRIEEASELITRMIGD-GVSPDCITYTTMINELCRRNDVKKAIELWNSMT 849
Query: 229 LKGCMPNLATFNARVH 244
KG P+ +N +H
Sbjct: 850 EKGIRPDRVAYNTLIH 865
>AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28133933-28135381 FORWARD
LENGTH=453
Length = 453
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
++ +G G + A F M + +V ++NA ++VL + + + V E+ ++
Sbjct: 271 VVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEM-VRR 329
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+V + N++++ G+ M EN+ G P+ TY +I + + E
Sbjct: 330 GYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENE-GCEPNFQTYNMMIRYYSECSEVEK 388
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWD 254
GL+ +M C+PNL T+N + + +R+ D
Sbjct: 389 ALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSED 423
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 41/191 (21%)
Query: 106 YGKVGMTQHALETFYHMDSSR--RTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRL 163
Y G A++ F +M + + SFN L VL ++K + E +F +
Sbjct: 136 YASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSV-- 193
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQ----HRRWEI 219
D + N+++ +C + + +A L +L+ ++GI P++ TY T++ F++ WE
Sbjct: 194 DTVTYNVILNGWCLIKRTPKA-LEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEF 252
Query: 220 -------------------------------GNGLWNRMVLKGCMPNLATFNARVHFLVC 248
+++ M+ +G +P++AT+NA + L C
Sbjct: 253 FLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVL-C 311
Query: 249 ARRAWDANAVM 259
+ + VM
Sbjct: 312 KKDNVENAVVM 322
>AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:19608857-19610428 REVERSE
LENGTH=523
Length = 523
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 158 KFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRW 217
++D+ +VY+ N ++K C K+ +AYL +L+ KG PD TY +++A H
Sbjct: 306 RYDLVPNVYTFNHIIKTLCKNEKVDDAYL-LLDEMIQKGANPDTWTYNSIMAYHCDHCEV 364
Query: 218 EIGNGLWNRMVLKGCMPNLATFNARVHFLV 247
L +RM C+P+ T+N + L+
Sbjct: 365 NRATKLLSRMDRTKCLPDRHTYNMVLKLLI 394
>AT1G19290.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6666249-6668963 FORWARD
LENGTH=904
Length = 904
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQT-KHFDYVVEFLEQASLKFD 160
I+ +Y + G+ ++AL F +M + R + + K ++V + + F+
Sbjct: 161 ILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMISFE 220
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
+ DV++ +IVV A+C G + +A +F E+E+ G+ +VVTY +LI + E
Sbjct: 221 VSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGM 280
Query: 221 NGLWNRMVLKGCMPNLATFNARV 243
+ M +G N+ T+ + +
Sbjct: 281 TRVLRLMSERGVSRNVVTYTSLI 303
>AT5G42310.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16915860-16918238 FORWARD
LENGTH=709
Length = 709
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
++ +YGK G A+E M S + + +NA + AQ EQA F
Sbjct: 555 LVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRG-------LSEQAVNAF 607
Query: 160 ------DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQ 213
++ + ++N ++ AF + + EA+ +L+ + G++PDVVTYTTL+ A +
Sbjct: 608 RVMTSDGLKPSLLALNSLINAFGEDRRDAEAFA-VLQYMKENGVKPDVVTYTTLMKALIR 666
Query: 214 HRRWEIGNGLWNRMVLKGCMPN 235
+++ ++ M++ GC P+
Sbjct: 667 VDKFQKVPVVYEEMIMSGCKPD 688
>AT1G06580.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:2014440-2015942 REVERSE
LENGTH=500
Length = 500
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 128 TVKSFNATLKVLAQTKHFDYVVEFLEQ-ASLKFDIRLDVYSINIVVKAFCDMGKLQEAYL 186
++ +F + + F + ++Q L ++ + +Y N ++ + C+ G++ A L
Sbjct: 148 SIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIY--NTIIDSLCEKGQVNTA-L 204
Query: 187 FMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
+L+ GIRPDVVTY +LI + W + + + M+ G P++ TF+A +
Sbjct: 205 DVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALI 261
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 110 GMTQHALETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYS 167
G AL+ HM R V ++N+ + L + + L ++ I DV +
Sbjct: 198 GQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDM-MRMGISPDVIT 256
Query: 168 INIVVKAFCDMGKLQEA---YLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
+ ++ + G+L EA Y M++ + + P++VTY +LI H + +
Sbjct: 257 FSALIDVYGKEGQLLEAKKQYNEMIQ----RSVNPNIVTYNSLINGLCIHGLLDEAKKVL 312
Query: 225 NRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGR 264
N +V KG PN T+N ++ A+R D ++ +M R
Sbjct: 313 NVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSR 352
>AT2G16880.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:7312262-7314493 REVERSE
LENGTH=743
Length = 743
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
I+++ ++N ++ A C KL EA+ +L S + +G D VTY TLI F++ + E
Sbjct: 447 IKMNTITLNTILDALCKERKLDEAH-NLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKA 505
Query: 221 NGLWNRMVLKGCMPNLATFNARVHFLV------CARRAWDANAVMGLM 262
+W+ M P ++TFN+ + L A +D A GL+
Sbjct: 506 LEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLL 553
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 5/148 (3%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSR--RTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+IG G T+ A+E F + S +FN+ + + + EF + S+K
Sbjct: 527 LIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNE-SIKH 585
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+ D Y+ NI++ C G ++A F ++ + D VTY T+I+AF + ++ +
Sbjct: 586 SFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV--DTVTYNTMISAFCKDKKLKE 643
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLV 247
L + M KG P+ T+N+ + L+
Sbjct: 644 AYDLLSEMEEKGLEPDRFTYNSFISLLM 671
>AT5G38730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:15510901-15512691 FORWARD
LENGTH=596
Length = 596
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 106 YGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRL 163
Y K GM ++ F + S + +++ L L + + D V + ++ +K +
Sbjct: 143 YAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKIFKKM-VKLGVVA 201
Query: 164 DVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGL 223
+++ N++V A G ++A + E E +KG+ PD+ TY TLI+ + + +
Sbjct: 202 NIHVYNVLVHACSKSGDPEKAEKLLSEME-EKGVFPDIFTYNTLISVYCKKSMHFEALSV 260
Query: 224 WNRMVLKGCMPNLATFNARVH 244
+RM G PN+ T+N+ +H
Sbjct: 261 QDRMERSGVAPNIVTYNSFIH 281
>AT3G61520.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:22768974-22771274 REVERSE
LENGTH=766
Length = 766
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 148 VVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTL 207
VVE L++ LD+ + N+++ FCD ++ Y + + E + G +PD +TY TL
Sbjct: 533 VVEKLKEGGFS----LDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKE-GKKPDSITYNTL 587
Query: 208 IAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
I+ F +H+ +E + +M G P + T+ A +
Sbjct: 588 ISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVI 623
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVKS--FNATLKVLAQTKHFDYVVEFLEQASLKF 159
+IGL+ T+ E M+ + S +N + + K F+ V +EQ ++
Sbjct: 552 LIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQ--MRE 609
Query: 160 D-IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
D + V + V+ A+C +G+L EA + + P+ V Y LI AF + +
Sbjct: 610 DGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFG 669
Query: 219 IGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRVL 266
L M +K PN+ T+NA C ++ LM ++
Sbjct: 670 QALSLKEEMKMKMVRPNVETYNA---LFKCLNEKTQGETLLKLMDEMV 714
>AT5G28460.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:10374927-10377227 FORWARD
LENGTH=766
Length = 766
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 5/151 (3%)
Query: 108 KVGMTQHALETFYHMDSSRRTVK---SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLD 164
KVG + A E M R V ++N + + + E + + + +I+ +
Sbjct: 382 KVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMK-EDEIKPN 440
Query: 165 VYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
V ++N +V C L A +F ++ E + G++ +VVTY TLI A E +
Sbjct: 441 VVTVNTIVGGMCRHHGLNMAVVFFMDMEKE-GVKGNVVTYMTLIHACCSVSNVEKAMYWY 499
Query: 225 NRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
+M+ GC P+ + A + L RR DA
Sbjct: 500 EKMLEAGCSPDAKIYYALISGLCQVRRDHDA 530
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 148 VVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTL 207
VVE L++ LD+ + N+++ FCD ++ Y + + E + G +PD +TY TL
Sbjct: 533 VVEKLKEGGFS----LDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE-GKKPDSITYNTL 587
Query: 208 IAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
I+ F +H+ +E + +M G P + T+ A +
Sbjct: 588 ISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVI 623
>AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23451144-23452201 FORWARD
LENGTH=323
Length = 323
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
I+ V N ++ C G A E +DKGI PDV+TY+ +I +F + RW
Sbjct: 72 IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEM-HDKGIFPDVITYSGMIDSFCRSGRWTDA 130
Query: 221 NGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGR 264
L M+ + P++ TF+A ++ LV + +A + G M R
Sbjct: 131 EQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLR 174
>AT2G06000.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 125 SRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEA 184
S K+FN ++ L + +E L S F D+ + N +++ FC +L +A
Sbjct: 202 SCNDTKTFNILIRGLCGVGKAEKALELLGVMS-GFGCEPDIVTYNTLIQGFCKSNELNKA 260
Query: 185 YLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
+ ++ PDVVTYT++I+ + + + + L + M+ G P TFN V
Sbjct: 261 SEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVD 320
Query: 245 FLVCARRAWDANAVMGLM 262
A A + G M
Sbjct: 321 GYAKAGEMLTAEEIRGKM 338
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 8/177 (4%)
Query: 91 PQARREGFIVRIIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVE 150
P R GF+V GK+ L + ++ V N+ L L + + ++
Sbjct: 136 PNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVV---NSLLNTLVKLDRVEDAMK 192
Query: 151 FLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAA 210
++ L+F D + NI+++ C +GK ++A L +L + G PD+VTY TLI
Sbjct: 193 LFDE-HLRFQSCNDTKTFNILIRGLCGVGKAEKA-LELLGVMSGFGCEPDIVTYNTLIQG 250
Query: 211 FYQHRRWEIGNGLWNRMVLKG--CMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
F + + ++ + V G C P++ T+ + + A + +A++++ M R+
Sbjct: 251 FCKSNELNKASEMF-KDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKV--LAQTKHFDYVVEFLEQASLKF 159
+I Y +VG + M++ +F ++ + L E L Q + K
Sbjct: 353 LIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK- 411
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
DI + N V+ FC GK+ EA + + E E K +PD +T+T LI R
Sbjct: 412 DIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKK-CKPDKITFTILIIGHCMKGRMFE 470
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
++++MV GC P+ T ++ + L+ A A +A
Sbjct: 471 AVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506
>AT2G06000.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:2328000-2329610 REVERSE
LENGTH=536
Length = 536
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 125 SRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEA 184
S K+FN ++ L + +E L S F D+ + N +++ FC +L +A
Sbjct: 202 SCNDTKTFNILIRGLCGVGKAEKALELLGVMS-GFGCEPDIVTYNTLIQGFCKSNELNKA 260
Query: 185 YLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
+ ++ PDVVTYT++I+ + + + + L + M+ G P TFN V
Sbjct: 261 SEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVD 320
Query: 245 FLVCARRAWDANAVMGLM 262
A A + G M
Sbjct: 321 GYAKAGEMLTAEEIRGKM 338
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 8/177 (4%)
Query: 91 PQARREGFIVRIIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVE 150
P R GF+V GK+ L + ++ V N+ L L + + ++
Sbjct: 136 PNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVV---NSLLNTLVKLDRVEDAMK 192
Query: 151 FLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAA 210
++ L+F D + NI+++ C +GK ++A L +L + G PD+VTY TLI
Sbjct: 193 LFDE-HLRFQSCNDTKTFNILIRGLCGVGKAEKA-LELLGVMSGFGCEPDIVTYNTLIQG 250
Query: 211 FYQHRRWEIGNGLWNRMVLKG--CMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
F + + ++ + V G C P++ T+ + + A + +A++++ M R+
Sbjct: 251 FCKSNELNKASEMF-KDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVKSFNATLKV--LAQTKHFDYVVEFLEQASLKF 159
+I Y +VG + M++ +F ++ + L E L Q + K
Sbjct: 353 LIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK- 411
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
DI + N V+ FC GK+ EA + + E E K +PD +T+T LI R
Sbjct: 412 DIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKK-CKPDKITFTILIIGHCMKGRMFE 470
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
++++MV GC P+ T ++ + L+ A A +A
Sbjct: 471 AVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506
>AT2G26790.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr2:11425270-11427669 REVERSE
LENGTH=799
Length = 799
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+I LD N+ A +G+++EA+ +L+ D+GI PDV+ YTTLI + +
Sbjct: 383 NIFLDRVCYNVAFDALSKLGRVEEAFE-LLQEMKDRGIVPDVINYTTLIDGYCLQGKVVD 441
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFL 246
L + M+ G P+L T+N V L
Sbjct: 442 ALDLIDEMIGNGMSPDLITYNVLVSGL 468
>AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 131 SFNATLKVLAQTKHFDYVVEFL---EQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLF 187
++N+ + L ++ + + V+ + E A L D + ++ A+C G++ +A
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN----ADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 188 MLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
+ E KG++P +VT+ L+ F H E G L N M+ KG PN TFN+ V
Sbjct: 549 LKEMLG-KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
DI DV + ++ FC +G + EA E KG+ PD VT+T LI + + +
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC-KGLEPDSVTFTELINGYCKAGHMKD 439
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
+ N M+ GC PN+ T+ + L AN ++ M ++
Sbjct: 440 AFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485
>AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 131 SFNATLKVLAQTKHFDYVVEFL---EQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLF 187
++N+ + L ++ + + V+ + E A L D + ++ A+C G++ +A
Sbjct: 493 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLN----ADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 188 MLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
+ E KG++P +VT+ L+ F H E G L N M+ KG PN TFN+ V
Sbjct: 549 LKEMLG-KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
DI DV + ++ FC +G + EA E KG+ PD VT+T LI + + +
Sbjct: 381 DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC-KGLEPDSVTFTELINGYCKAGHMKD 439
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGRV 265
+ N M+ GC PN+ T+ + L AN ++ M ++
Sbjct: 440 AFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485
>AT3G06920.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:2181717-2184449 FORWARD
LENGTH=871
Length = 871
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRT--VKSFNATLKVLAQTKHF-DYVVEFLEQASLK 158
+I +GKVG A + T + ++N+ L L + + + +V F LK
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722
Query: 159 FDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWE 218
Y I ++ C + K +A++F E + +G++P ++YTT+I+ +
Sbjct: 723 CTPNQVTYGI--LINGLCKVRKFNKAFVFWQEMQK-QGMKPSTISYTTMISGLAKAGNIA 779
Query: 219 IGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
L++R G +P+ A +NA + L RA DA
Sbjct: 780 EAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDA 816
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 6/160 (3%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+IG+ K A+E F H++ +RR ++N + FD LE+ K
Sbjct: 279 MIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG 338
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
I V + N ++ MGK+ EA E + D P++ TY LI + + +
Sbjct: 339 SIP-SVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA--PNLSTYNILIDMLCRAGKLDT 395
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVM 259
L + M G PN+ T N V L C + D M
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRL-CKSQKLDEACAM 434
>AT5G28370.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:10332375-10334558 REVERSE
LENGTH=727
Length = 727
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 5/151 (3%)
Query: 108 KVGMTQHALETFYHMDSSRRTVK---SFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLD 164
KVG + A E M R V ++N + + + E + + + +I+ +
Sbjct: 382 KVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMK-EDEIKPN 440
Query: 165 VYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
V ++N +V C L A +F ++ E + G++ +VVTY TLI A E +
Sbjct: 441 VVTVNTIVGGMCRHHGLNMAVVFFMDMEKE-GVKGNVVTYMTLIHACCSVSNVEKAMYWY 499
Query: 225 NRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
+M+ GC P+ + A + L RR DA
Sbjct: 500 EKMLEAGCSPDAKIYYALISGLCQVRRDHDA 530
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 148 VVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTL 207
VVE L++ LD+ + N+++ FCD ++ Y + + E + G +PD +TY TL
Sbjct: 533 VVEKLKEGGFS----LDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE-GKKPDSITYNTL 587
Query: 208 IAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
I+ F +H+ +E + +M G P + T+ A +
Sbjct: 588 ISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVI 623
>AT2G01740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:326136-327815 REVERSE
LENGTH=559
Length = 559
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSRRTVKS--FNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I + K G Q A E + M R S + + Q D ++FL + L
Sbjct: 239 LIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKM-LNQ 297
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+RLD+ + +++ C GKL+EA ++E + PD+V +TT++ A+++ R +
Sbjct: 298 GMRLDITAYGVIISGLCGNGKLKEATE-IVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKA 356
Query: 220 GNGLWNRMVLKGCMPNLATFNARV 243
++++++ +G P++ + +
Sbjct: 357 AVNMYHKLIERGFEPDVVALSTMI 380
>AT5G14080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4543265-4545256 REVERSE
LENGTH=634
Length = 634
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A+E +M S+ + +++ + K L + D++++ E S K ++ S ++++
Sbjct: 346 AVEFLVYMVSTGKLPAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFS-ELQSYSLMI 404
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
C G+++E+Y + E + + G+ PDV Y LI A + LW+ M ++GC
Sbjct: 405 SFLCKAGRVRESYTALQEMKKE-GLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGC 463
Query: 233 MPNLATFNARV 243
NL T+N +
Sbjct: 464 KMNLTTYNVLI 474
>AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24900186-24903110 REVERSE
LENGTH=974
Length = 974
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 158 KFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRW 217
K +I + Y+ VVK C G L AY + E G RP+VV YTTLI F Q+ R+
Sbjct: 410 KRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA-SGCRPNVVIYTTLIKTFLQNSRF 468
Query: 218 EIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVM 259
+ M +G P++ +N+ + L A+R +A + +
Sbjct: 469 GDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
>AT5G16640.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:5461031-5462545 FORWARD
LENGTH=504
Length = 504
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 115 ALETFYHMDSSRR--TVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
+L+ F+HM R ++ F+ L +++ K +D V+ EQ + I ++ + NI++
Sbjct: 65 SLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQM-LGIPHNLCTCNILL 123
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGC 232
FC +L A F L G P +VT+ +L+ F + R ++++MV G
Sbjct: 124 NCFCRCSQLSLALSF-LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGY 182
Query: 233 MPNLATFNARVHFLVCARRAWDA 255
PN+ +N + L +++ +A
Sbjct: 183 KPNVVIYNTIIDGLCKSKQVDNA 205
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFM 188
V ++N+ + L + + + + K +I DV++ N ++ A G++ EA F
Sbjct: 221 VVTYNSLISGLCSSGRWSDATRMVSCMT-KREIYPDVFTFNALIDACVKEGRVSEAEEF- 278
Query: 189 LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
E + + PD+VTY+ LI + R + ++ MV KGC P++ T++ ++
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILIN 334
>AT1G02420.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:493683-495158 FORWARD
LENGTH=491
Length = 491
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
++ DV + N ++ +C ++++AY +++ ++ PDV+TYTT+I + +
Sbjct: 242 LKPDVVTYNSLIDVYCKDREIEKAYK-LIDKMREEEETPDVITYTTVIGGLGLIGQPDKA 300
Query: 221 NGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
+ M GC P++A +NA + ARR DA+ ++ M
Sbjct: 301 REVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEM 342
>AT1G64100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23791585-23793641 FORWARD LENGTH=666
Length = 666
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 115 ALETFYHMDSSR--RTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A++ F +M SR T N + V + D + + ++ I L++YS NI++
Sbjct: 90 AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIR-RIPLNIYSFNILI 148
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRR---------WEIGNG- 222
K FCD KL + L G +PDVVT+ TL+ R + + G
Sbjct: 149 KCFCDCHKLSFS-LSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGF 207
Query: 223 -----LWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
L+++MV G P + TFN ++ L R +A A++ M
Sbjct: 208 LEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKM 252
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
I+ K+G T+ AL M+ + + V ++A + L + H ++L L+
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDA-QYLFSEMLEK 325
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLF---MLESENDKGIRPDVVTYTTLIAAFYQHRR 216
I +V++ N ++ FC G+ +A M+E E I PDV+T+ LI+A + +
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE----INPDVLTFNALISASVKEGK 381
Query: 217 WEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
L + M+ + P+ T+N+ ++ R DA + LM
Sbjct: 382 LFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM 427
>AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:8203873-8206341 REVERSE
LENGTH=822
Length = 822
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
++ + G+ + A E F + S ++NA L+V + + + L++ +
Sbjct: 287 VLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME-EN 345
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
D + N +V A+ G +EA ++E KG+ P+ +TYTT+I A+ + + +
Sbjct: 346 SCPADSVTYNELVAAYVRAGFSKEA-AGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDE 404
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFL 246
L+ M GC+PN T+NA + L
Sbjct: 405 ALKLFYSMKEAGCVPNTCTYNAVLSLL 431
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 146 DYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYT 205
+ +++ LE++ LK D+ S N V+K FC G +QEA + ML ++GIRP + TY
Sbjct: 686 EEILKTLEKSQLKPDL----VSYNTVIKGFCRRGLMQEA-VRMLSEMTERGIRPCIFTYN 740
Query: 206 TLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATF 239
T ++ + + + M C PN TF
Sbjct: 741 TFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTF 774
>AT1G64100.2 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23791585-23795563 FORWARD LENGTH=806
Length = 806
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 115 ALETFYHMDSSR--RTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVV 172
A++ F +M SR T N + V + D + + ++ I L++YS NI++
Sbjct: 90 AIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIR-RIPLNIYSFNILI 148
Query: 173 KAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRR---------WEIGNG- 222
K FCD KL + L G +PDVVT+ TL+ R + + G
Sbjct: 149 KCFCDCHKLSFS-LSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGF 207
Query: 223 -----LWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
L+++MV G P + TFN ++ L R +A A++ M
Sbjct: 208 LEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKM 252
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
I+ K+G T+ AL M+ + + V ++A + L + H ++L L+
Sbjct: 267 IVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDA-QYLFSEMLEK 325
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
I +V++ N ++ FC G+ +A +L ++ I PDV+T+ LI+A + +
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQR-LLRDMIEREINPDVLTFNALISASVKEGKLFE 384
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
L + M+ + P+ T+N+ ++ R DA + LM
Sbjct: 385 AEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLM 427
>AT1G18900.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532360 FORWARD
LENGTH=860
Length = 860
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 153 EQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFY 212
E+A +R+D Y N V+K D G A F + G + D TYTT++
Sbjct: 319 EEALQNLGLRIDAYQANQVLKQMNDYGN---ALGFFYWLKRQPGFKHDGHTYTTMVGNLG 375
Query: 213 QHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
+ +++ N L + MV GC PN T+N +H
Sbjct: 376 RAKQFGAINKLLDEMVRDGCQPNTVTYNRLIH 407
>AT1G18900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532360 FORWARD
LENGTH=860
Length = 860
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 153 EQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFY 212
E+A +R+D Y N V+K D G A F + G + D TYTT++
Sbjct: 319 EEALQNLGLRIDAYQANQVLKQMNDYGN---ALGFFYWLKRQPGFKHDGHTYTTMVGNLG 375
Query: 213 QHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
+ +++ N L + MV GC PN T+N +H
Sbjct: 376 RAKQFGAINKLLDEMVRDGCQPNTVTYNRLIH 407
>AT1G09820.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:3190594-3192414 REVERSE
LENGTH=606
Length = 606
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 169 NIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMV 228
N+++ A+C +GK+ + + E E + GI PDV TY LIA ++ E L++++
Sbjct: 405 NMLIDAYCKLGKIDDGFALKEEMERE-GIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463
Query: 229 LKGCMPNLATF 239
KG +P+L TF
Sbjct: 464 SKG-LPDLVTF 473
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 169 NIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMV 228
NIV+K +C G L+ A + E ++ +R +V +Y L+ + Q + E N L N M+
Sbjct: 509 NIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568
Query: 229 LKGCMPNLATF 239
KG +PN T+
Sbjct: 569 EKGLVPNRITY 579
>AT1G18900.3 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532541 FORWARD
LENGTH=886
Length = 886
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 153 EQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFY 212
E+A +R+D Y N V+K D G A F + G + D TYTT++
Sbjct: 319 EEALQNLGLRIDAYQANQVLKQMNDYGN---ALGFFYWLKRQPGFKHDGHTYTTMVGNLG 375
Query: 213 QHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
+ +++ N L + MV GC PN T+N +H
Sbjct: 376 RAKQFGAINKLLDEMVRDGCQPNTVTYNRLIH 407
>AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:6204940-6209691 REVERSE
LENGTH=1440
Length = 1440
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 6/155 (3%)
Query: 91 PQARREGFIVRIIGLYGKVGMTQHALETFYHMDSS-RRTVKSFNATLKVLAQTKHFDYVV 149
P AR + I+G+ G+ A+E F + + V+ +NA + V +++ F
Sbjct: 189 PNAR---MVAAILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQ 245
Query: 150 EFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAY-LFMLESENDKGIRPDVVTYTTLI 208
E ++ + + D+ S N ++ A G L + +L+ + G+RPD +TY TL+
Sbjct: 246 ELVDAMRQRGCVP-DLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLL 304
Query: 209 AAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
+A + + ++ M C P+L T+NA +
Sbjct: 305 SACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMI 339
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSSR--RTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I +YG+ G+ A F ++ ++N+ L A+ ++ + V E +Q K
Sbjct: 338 MISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQ-KM 396
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
D + N ++ + G+L A + + G PD +TYT LI + + R
Sbjct: 397 GFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVE 456
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCA 249
L + M+ G P L T++A L+C
Sbjct: 457 AAALMSEMLDVGIKPTLQTYSA----LICG 482
>AT1G22960.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:8128086-8130242 REVERSE
LENGTH=718
Length = 718
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 115 ALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVV--EFLEQASLKFD------IRLDVY 166
AL F +D +R + S A V T Y+ +F+E ASL FD I +
Sbjct: 352 ALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVE-ASLLFDDLRAGDIHPSIV 410
Query: 167 SINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNR 226
+ N ++ C+ G L+ A + E + I PDV+TYTTL+ F ++ + +++
Sbjct: 411 TYNTLIDGLCESGNLEGAQR-LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDE 469
Query: 227 MVLKGCMPNLATFNAR 242
M+ KG P+ + R
Sbjct: 470 MLRKGIKPDGYAYTTR 485
>AT2G02150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:550340-552625 REVERSE
LENGTH=761
Length = 761
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 20/159 (12%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I + K G LE + M + + V S++ + + E + Q ++KF
Sbjct: 338 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK--------EGMMQQAIKF 389
Query: 160 DIRL-------DVYSINIVVKAFCDMGKLQEAYLFMLESENDK-GIRPDVVTYTTLIAAF 211
+ + + Y+ ++ A C +G L +A F L +E + G+ +VVTYT LI
Sbjct: 390 YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDA--FRLGNEMLQVGVEWNVVTYTALIDGL 447
Query: 212 YQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCAR 250
R + L+ +M G +PNLA++NA +H V A+
Sbjct: 448 CDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAK 486
>AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23587298-23588220 FORWARD
LENGTH=257
Length = 257
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 161 IRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIG 220
I+ DV +V C G A E ++KGI P+V+TY +I +F RW
Sbjct: 6 IKADVVISTAIVDRLCKDGNHINAQNLFTEM-HEKGIFPNVLTYNCMIDSFCHSGRWSDA 64
Query: 221 NGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLMGR 264
+ L M+ K P++ TF+A ++ V R+ +A + M R
Sbjct: 65 DQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLR 108
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 129 VKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFM 188
+ +F+A + + + E ++ L++ I + N ++ FC ++ +A M
Sbjct: 80 IVTFSALINAFVKERKVSEAEEIYKEM-LRWSIFPTTITYNSMIDGFCKQDRVDDAKR-M 137
Query: 189 LESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVC 248
L+S KG PDVVT++TLI + + +R + G ++ M +G + N T+ +H
Sbjct: 138 LDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFC- 196
Query: 249 ARRAWDANAVMGLMGRVL 266
+ D +A L+ ++
Sbjct: 197 --QVGDLDAAQDLLNEMI 212
>AT2G32630.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:13844834-13846708 FORWARD
LENGTH=624
Length = 624
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 4/160 (2%)
Query: 105 LYGKVGMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKH--FDYVVEFLEQASLKFDIR 162
+Y GM + L F +M ++ + + ++A K D +E + + ++
Sbjct: 163 VYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRM-VDSGVK 221
Query: 163 LDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNG 222
+ VYS+ IVV+ C G+++++ + E + KGI+P+ TY T+I A+ + R + G
Sbjct: 222 ITVYSLTIVVEGLCRRGEVEKSKKLIKEF-SVKGIKPEAYTYNTIINAYVKQRDFSGVEG 280
Query: 223 LWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
+ M G + N T+ + V + DA + M
Sbjct: 281 VLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEM 320
>AT1G02060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:360918-363050 REVERSE
LENGTH=710
Length = 710
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 102 IIGLYGKVGMTQHALETFYHMDSS--RRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I YG G+ Q +++ F M +V +FN+ L +L + + ++ +
Sbjct: 144 LIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTY 203
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
+ D Y+ N ++ FC + EA+ + E PDVVTY T+I + + +I
Sbjct: 204 GVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL-YHCNPDVVTYNTIIDGLCRAGKVKI 262
Query: 220 GNGLWNRMVLKG--CMPNLATFNARV 243
+ + + M+ K PN+ ++ V
Sbjct: 263 AHNVLSGMLKKATDVHPNVVSYTTLV 288
>AT2G36240.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:15195663-15197156 FORWARD LENGTH=497
Length = 497
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 132 FNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLES 191
F + + + + DY + + D + +V N VV + G + +A F
Sbjct: 160 FRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRM 219
Query: 192 ENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVLKGCMPNLATFNARV 243
++ +PDV T+ LI + + ++++ L+ M KGC PN+ +FN +
Sbjct: 220 GKERA-KPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLI 270
>AT3G18020.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:6165449-6167515 FORWARD
LENGTH=688
Length = 688
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 110 GMTQHALETFYHMDSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKFDIRLDVYSIN 169
G ++ LE + + RT + +N L+ L + ++ L + L+ D R D Y++N
Sbjct: 394 GKARNVLELMLRKEGADRT-RIYNIYLRGLCVMDNPTEILNVL-VSMLQGDCRPDEYTLN 451
Query: 170 IVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLWNRMVL 229
V+ C MG++ +A + + K PD VT T++ R E + NR++
Sbjct: 452 TVINGLCKMGRVDDAMKVLDDMMTGKFCAPDAVTLNTVMCGLLAQGRAEEALDVLNRVMP 511
Query: 230 KGCM-PNLATFNARVHFLVCARRAWDANAVMG 260
+ + P + +NA + L + +A +V G
Sbjct: 512 ENKIKPGVVAYNAVIRGLFKLHKGDEAMSVFG 543
>AT5G18950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:6328519-6329970 REVERSE
LENGTH=483
Length = 483
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 165 VYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEIGNGLW 224
+Y ++K C K EAY + ++ DKG PD V YTT+I F + LW
Sbjct: 283 MYIYQKIIKGLCMNKKQLEAYC-IFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLW 341
Query: 225 NRMVLKGCMPNLATFNARVH 244
M+ KG PN +N +H
Sbjct: 342 FEMIKKGMRPNEFAYNVMIH 361
>AT2G37230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15637177-15639450 REVERSE
LENGTH=757
Length = 757
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 96 EGFIVRIIGLYGKVGMTQHALETFYHMD--SSRRTVKSFNATLKVLAQTKHFDYVVEFLE 153
E V +I YGK G+ Q +++ F M RT+KS+N+ KV+ + + +
Sbjct: 185 EDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFN 244
Query: 154 QASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQ 213
+ + + ++ N+++ F +L+ A F E +GI PD T+ T+I F +
Sbjct: 245 KM-VSEGVEPTRHTYNLMLWGFFLSLRLETALRF-FEDMKTRGISPDDATFNTMINGFCR 302
Query: 214 HRRWEIGNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDA 255
++ + L+ M P++ ++ + + R D
Sbjct: 303 FKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDG 344
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 4/163 (2%)
Query: 102 IIGLYGKVGMTQHALETFYHM--DSSRRTVKSFNATLKVLAQTKHFDYVVEFLEQASLKF 159
+I LY KVG ALE M + + +K+++ + + K + E +K
Sbjct: 490 LINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM-VKE 548
Query: 160 DIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFYQHRRWEI 219
++ DV N ++ AFC MG + A + E + + RP T+ +I + +
Sbjct: 549 GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRH-RPTTRTFMPIIHGYAKSGDMRR 607
Query: 220 GNGLWNRMVLKGCMPNLATFNARVHFLVCARRAWDANAVMGLM 262
+++ M GC+P + TFN ++ LV R+ A ++ M
Sbjct: 608 SLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEM 650
>AT1G74750.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:28086800-28089367 FORWARD
LENGTH=855
Length = 855
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 153 EQASLKFDIRLDVYSINIVVKAFCDMGKLQEAYLFMLESENDKGIRPDVVTYTTLIAAFY 212
E+A F R+D Y N V+K M A F + G + D TYTT++
Sbjct: 314 EEALHNFGFRMDAYQANQVLK---QMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLG 370
Query: 213 QHRRWEIGNGLWNRMVLKGCMPNLATFNARVH 244
+ +++ N L + MV GC PN T+N +H
Sbjct: 371 RAKQFGEINKLLDEMVRDGCKPNTVTYNRLIH 402