Miyakogusa Predicted Gene

Lj0g3v0142579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0142579.1 Non Chatacterized Hit- tr|B9T1T7|B9T1T7_RICCO
NOI, putative OS=Ricinus communis GN=RCOM_0691110
PE=4,70.89,2e-19,AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.8714.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55850.3 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...   104   1e-23
AT5G55850.1 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    95   1e-20
AT2G04410.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    91   2e-19
AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    90   3e-19
AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    77   2e-15
AT5G40645.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    75   7e-15
AT5G63270.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    71   1e-13
AT4G35655.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    70   2e-13
AT3G48450.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    65   1e-11
AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:...    52   8e-08

>AT5G55850.3 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:22603617-22604850 FORWARD
          LENGTH=95
          Length = 95

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGS-ESPGKTATKTQSKPALDPGK 61
          DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG   SPGK++         DP K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 62 PQSKKWFCCVNPPA 75
          PQ KKW CC+  PA
Sbjct: 79 PQPKKWLCCMQAPA 92


>AT5G55850.1 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:22603617-22604951 FORWARD
          LENGTH=114
          Length = 114

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGS-ESPGKTATKTQSKPALDP 59
          MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG   SPGK++         DP
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 60

Query: 60 GKPQSKKWFCCVN 72
           KPQ  K    ++
Sbjct: 61 SKPQPVKKMALLH 73


>AT2G04410.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr2:1534012-1535040 REVERSE LENGTH=73
          Length = 73

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/73 (68%), Positives = 59/73 (80%), Gaps = 5/73 (6%)

Query: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG-SESPGKTA-TKTQSKPALD 58
          M+DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GG S+SPGK      ++   L+
Sbjct: 1  MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLE 60

Query: 59 PGKPQSKKWFCCV 71
            KP +KKWFCC+
Sbjct: 61 --KP-AKKWFCCI 70


>AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:22603617-22604951 FORWARD
          LENGTH=130
          Length = 130

 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/71 (67%), Positives = 52/71 (73%), Gaps = 1/71 (1%)

Query: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGS-ESPGKTATKTQSKPALDPGK 61
          DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG   SPGK++         DP K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 62 PQSKKWFCCVN 72
          PQ  K    ++
Sbjct: 79 PQPVKKMALLH 89


>AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr2:7673359-7673568 FORWARD LENGTH=69
          Length = 69

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 6/68 (8%)

Query: 2  SDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPGKTATKTQSKPALDPGK 61
          ++ GR LPKFGEWDVNDPA+A+GFTVIF+KA ++KKT      G+++TKT S+   D  K
Sbjct: 4  NEAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKT------GRSSTKTNSQRKQDGDK 57

Query: 62 PQSKKWFC 69
          P  KKW C
Sbjct: 58 PAVKKWLC 65


>AT5G40645.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:16280410-16280883 REVERSE
          LENGTH=73
          Length = 73

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 47/69 (68%), Gaps = 11/69 (15%)

Query: 6  RPLPKFGEWDVNDPASAEGFTVIFNKARDEKKT---GGSESPGKTATKTQSKPALDPGKP 62
          RPLPKFGEWDVNDPASAEGFTVIF KARD+KKT   G + S  +   K+Q +P       
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRAASQRRDNNKSQDEP------- 65

Query: 63 QSKKWFCCV 71
           +KK FCC 
Sbjct: 66 -TKKRFCCF 73


>AT5G63270.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:25365498-25365949 REVERSE
          LENGTH=80
          Length = 80

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 8/75 (10%)

Query: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSE--------SPGKTATKTQSK 54
          +KG+PLPKFGEWDVN+PASAEGFTVIF+KA DEKKT  +         SP +     Q+ 
Sbjct: 4  NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQNN 63

Query: 55 PALDPGKPQSKKWFC 69
                     KWFC
Sbjct: 64 NHSSQNPKAKNKWFC 78


>AT4G35655.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr4:16910755-16910961 FORWARD
          LENGTH=68
          Length = 68

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 48/65 (73%), Gaps = 7/65 (10%)

Query: 5  GRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSESPGKTATKTQSKPALDPGKPQS 64
           RPLPKFGEWDVNDPA+AEGFTVIF+KA ++KKT      G++++K  S+   D  KP +
Sbjct: 7  ARPLPKFGEWDVNDPATAEGFTVIFSKAGEDKKT------GRSSSKAPSQRKQDGVKP-T 59

Query: 65 KKWFC 69
          KKW C
Sbjct: 60 KKWLC 64


>AT3G48450.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr3:17944232-17944788 REVERSE
          LENGTH=89
          Length = 89

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKT 38
          ++ RPLPKFGEWD  +P SAEGFTVIFNKARD+KKT
Sbjct: 5  NRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40


>AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 |
           chr3:9132458-9133747 FORWARD LENGTH=211
          Length = 211

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 7/64 (10%)

Query: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGSES-PGKTATKTQSKPALDPGKPQSKK 66
           +PKFG+WD N+P+SA+G+T IFNK R+E+ +G + S   +T T   S+       P +  
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSR------NPNNTS 201

Query: 67  WFCC 70
             CC
Sbjct: 202 SCCC 205