Miyakogusa Predicted Gene

Lj0g3v0142159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0142159.1 tr|A9SI59|A9SI59_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_165067,42,1e-18,coiled-coil,NULL; seg,NULL,CUFF.8683.1
         (198 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13200.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    93   9e-20

>AT4G13200.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: thylakoid,
           chloroplast thylakoid membrane, chloroplast,
           plastoglobule; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to
           97 proteins in 46 species: Archae - 0; Bacteria - 65;
           Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other
           Eukaryotes - 2 (source: NCBI BLink). |
           chr4:7668292-7669166 REVERSE LENGTH=185
          Length = 185

 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 73  RTVLDAFFLGKAVAEALNERIESTVGEFLSTVGRLQAEQQKQVQDFQEEVLDXXXXXXXX 132
           ++VLDAFFLGKA+AE +NERIESTVGE LST+G+ QAEQQKQVQ+ QEEVL+        
Sbjct: 70  KSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLERAKKAKER 129

Query: 133 XXXXXXXXQGLI-SKSAAETKVADS 156
                   QGL+ SK  A T+  D+
Sbjct: 130 AARETMEEQGLVASKPVAITRNPDA 154