Miyakogusa Predicted Gene

Lj0g3v0142099.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0142099.1 Non Chatacterized Hit- tr|K4CU06|K4CU06_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,41.04,2e-17,seg,NULL,CUFF.8679.1
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24750.1 | Symbols:  | unknown protein; Has 25 Blast hits to ...    48   4e-06

>AT3G24750.1 | Symbols:  | unknown protein; Has 25 Blast hits to 25
           proteins in 12 species: Archae - 0; Bacteria - 8;
           Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:9036735-9037564 FORWARD LENGTH=169
          Length = 169

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 60  TAEAKDQVKEDKKKA-ISRMKELLGLVSAAKKDKRGKF----------NEQKFQRQGNIR 108
           T + K + ++ K KA +SRMKEL+   +AAK DK  KF          N +K +    + 
Sbjct: 35  TNKEKSKSEQSKGKATLSRMKELIKWAAAAKSDKAVKFFTPKIMMELKNRRKLKMMREVN 94

Query: 109 ATPEDYQLCSESPKIEFTWDEEXXXXXXXXXXXXXXXXXXXXXGQAQIAHSPIH-ISCRK 167
                 ++ S S  I   W  E                         ++ +P++    RK
Sbjct: 95  EEESTKRMSSVSANISLRW--ESSESCTTNSSSDHISIVSSPGILVSLSPTPLYRCRSRK 152

Query: 168 ENWITTDSEFVVLEL 182
            NWITTDSEFVVLEL
Sbjct: 153 CNWITTDSEFVVLEL 167