Miyakogusa Predicted Gene

Lj0g3v0141689.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0141689.1 Non Chatacterized Hit- tr|H2RNJ0|H2RNJ0_TAKRU
Uncharacterized protein OS=Takifugu rubripes GN=CDC27
,47.67,2e-18,TPR_2,Tetratricopeptide TPR2; Tetratricopeptide
repeats,Tetratricopeptide repeat; HBT (HOBBIT), BIND,CUFF.8647.1
         (445 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20000.1 | Symbols: HBT, CDC27b | CDC27  family protein | chr...   481   e-136
AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-l...   204   1e-52

>AT2G20000.1 | Symbols: HBT, CDC27b | CDC27  family protein |
           chr2:8632324-8636900 REVERSE LENGTH=744
          Length = 744

 Score =  481 bits (1238), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 249/448 (55%), Positives = 299/448 (66%), Gaps = 19/448 (4%)

Query: 1   MPQSRYLFALSCFRMNLLREAEAALCPANEPAVEVPNGAAGHYLLGIIYRYTDRRTNAIH 60
           M QSRYLFALSCF+M+LL EAE+ALCP NEP  E+PNGAAGHYLLG+IY+YTDRR NA  
Sbjct: 63  MAQSRYLFALSCFQMDLLNEAESALCPVNEPGAEIPNGAAGHYLLGLIYKYTDRRKNAAQ 122

Query: 61  HFKQALSMDPLMWAAYEELCKLXXXXXXXXXXXXXXXXCIQKQYVN-CSPYPNPHLSSEE 119
            FKQ+L++DPL+WAAYEELC L                 IQKQY+   S     +  +EE
Sbjct: 123 QFKQSLTIDPLLWAAYEELCILGAAEEATAVFGETAALSIQKQYMQQLSTSLGLNTYNEE 182

Query: 120 CNVVTARQSVSEDASPRQLKHMQ--GLKDIAASHHGTSMIGGTAAQPIHNGPSNMSFYNT 177
            N  + + + SED SPRQ KH Q  GLKDI+ + H   + GG          SNMSFYNT
Sbjct: 183 RNSTSTKNTSSEDYSPRQSKHTQSHGLKDISGNFHSHGVNGGV---------SNMSFYNT 233

Query: 178 PSPMTTQLSSVAPPPLCRNVLPNGPNLNTLNADSSYKSTVNPPIQAPRRKFVGEGKLRKI 237
           PSP+  QLS +APPPL RN  P   N N+L  DSS KSTVN  +QAPRRKFV EGKLRKI
Sbjct: 234 PSPVAAQLSGIAPPPLFRNFQPAVANPNSLITDSSPKSTVNSTLQAPRRKFVDEGKLRKI 293

Query: 238 SGRLFSDSGPRRSSRLSVEASVNANAXXXXXXXXXXXXXXXXX-XXLSPMAFRSMAVRKG 296
           SGRLFSDSGPRRSSRLS ++  N N+                    LS +A RS+ +RKG
Sbjct: 294 SGRLFSDSGPRRSSRLSADSGANINSSVATVSGNVNNASKYLGGSKLSSLALRSVTLRKG 353

Query: 297 QLWANENIDEGIRNDVPVDTRLNITSTTTCSSPSMEAKSYEQDATTFKVGGQVTTGSKVM 356
             WANEN+DEG+R +   D+R N  STT   +      S +Q+  T  +GG   +   + 
Sbjct: 354 HSWANENMDEGVRGEPFDDSRPNTASTTGSMA------SNDQEDETMSIGGIAMSSQTIT 407

Query: 357 TGASEILILLRVLGEGYRLACLYRCKDALDTYLKLPQLHYNTGWVLSQVGKAYFELVDFV 416
            G SEIL LLR LGEG RL+ +YRC++ALDTY+KLP  HYNTGWVLSQVGKAYFEL+D++
Sbjct: 408 IGVSEILNLLRTLGEGCRLSYMYRCQEALDTYMKLPHKHYNTGWVLSQVGKAYFELIDYL 467

Query: 417 EADQAFRLARQITPYSFEGMDIYSTVLY 444
           EA++AFRLAR  +PY  EGMDIYSTVLY
Sbjct: 468 EAEKAFRLARLASPYCLEGMDIYSTVLY 495


>AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:5529534-5534465 FORWARD
           LENGTH=717
          Length = 717

 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 160/453 (35%), Positives = 206/453 (45%), Gaps = 61/453 (13%)

Query: 2   PQSRYLFALSCFRMNLLREAEAALCPANEPAVEVPNGAAGHYLLGIIYRYTDRRTNAIHH 61
           PQSRYLFA SCF+++LL EAEAAL P  + A EVP GAAGHYLLG+IYRY+ R+  +I  
Sbjct: 65  PQSRYLFAFSCFKLDLLGEAEAALLPCEDYAEEVPGGAAGHYLLGLIYRYSGRKNCSIQQ 124

Query: 62  FKQALSMDPLMWAAYEELCKLXXXXXXXXXXXXXXXXCIQKQYVNCSPYPNPHLSSEECN 121
           F+ ALS DPL W AY ELC L                 +QK                   
Sbjct: 125 FRMALSFDPLCWEAYGELCSLGAAEEASTVFGNVASQRLQK------------------T 166

Query: 122 VVTARQSVSEDASPRQLKHM-QGLKDIAASHHGTSMIGGTAAQPIHNGPSNMSFYNTPSP 180
            V  R S SE A+  Q+    + LKD   S   T  I G   Q       ++     P  
Sbjct: 167 CVEQRISFSEGATIDQITDSDKALKDTGLSQ--TEHIPGENQQ-------DLKIMQQPGD 217

Query: 181 MTTQLSSVAPPPLCRNVLPNGPNLNTLNADSSYKSTVNPPI--QAPRRKFVGEGKLRKIS 238
           +        PP   R +  NG +LNT +          PP+  +  RR  V EG L  + 
Sbjct: 218 I--------PPNTDRQLSTNGWDLNTPSPVLLQVMDALPPLLLKNMRRPAV-EGSLMSVH 268

Query: 239 GRLFSDSGPRRSSRLSVEASVNANAXXXXXXXXXXXXXXXXXXXLSPMAFRSMAVRKGQL 298
           G        RR +  S E S  A                      +PM   S +  K   
Sbjct: 269 GVRV-----RRRNFFSEELSAEAQEESGRRRSARIAARKK-----NPM---SQSFGKDSH 315

Query: 299 WANENIDEGIRNDVPV------DTRLNITSTTTCSSPSM-EAKSYEQDATTFKVGGQVTT 351
           W + +  E   N  P         R+  +   T S  S+ +  S   D            
Sbjct: 316 WLHLSPSES--NYAPSLSSMIGKCRIQSSKEATTSGQSVSDIGSSVDDEEKSNPSESSPD 373

Query: 352 GSKVMTGASEILILLRVLGEGYRLACLYRCKDALDTYLKLPQLHYNTGWVLSQVGKAYFE 411
              +++G SE+L LL++LG+G+R   +Y+C++AL  Y KL Q  YNT WVL QVGKAYFE
Sbjct: 374 RFSLISGISEVLSLLKILGDGHRHLHMYKCQEALLAYQKLSQKQYNTHWVLMQVGKAYFE 433

Query: 412 LVDFVEADQAFRLARQITPYSFEGMDIYSTVLY 444
           L D+  AD +F LA Q  PY+ EGMD YSTVLY
Sbjct: 434 LQDYFNADSSFTLAHQKYPYALEGMDTYSTVLY 466