Miyakogusa Predicted Gene

Lj0g3v0141149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0141149.1 Non Chatacterized Hit- tr|D7LA28|D7LA28_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,48.33,3e-18,
,CUFF.8619.1
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19740.1 | Symbols:  | P-loop containing nucleoside triphosph...    94   2e-20
AT1G50140.2 | Symbols:  | P-loop containing nucleoside triphosph...    84   1e-17
AT1G50140.1 | Symbols:  | P-loop containing nucleoside triphosph...    84   1e-17

>AT3G19740.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr3:6855944-6862930
           REVERSE LENGTH=993
          Length = 993

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 73/120 (60%), Gaps = 27/120 (22%)

Query: 1   MEALCEVLHSKQPLIVYFPDG---LHKSVPKSIQSEFFQKVQEKFELLSGPIVLICGQNK 57
           +EAL EVLHS QPLIVYFPD    L ++VPKS Q+EF  KVQE F+ LS P+V+ICG+NK
Sbjct: 448 LEALSEVLHSTQPLIVYFPDSSQWLSRAVPKSKQNEFVDKVQEMFDKLSSPVVMICGRNK 507

Query: 58  AQ--SKGQLLFSMN---------------------KGQKTSKDGEFYKPF-NVLSIQPPK 93
            +  SK +  F+M                       G+KTS+D E YK F NV+++ PPK
Sbjct: 508 IETGSKEREKFTMILPNFGRLAKLPLPLKRLTEGLTGRKTSEDNEIYKLFTNVMNLVPPK 567


>AT1G50140.2 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:18569921-18578663
           REVERSE LENGTH=981
          Length = 981

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/120 (45%), Positives = 69/120 (57%), Gaps = 27/120 (22%)

Query: 1   MEALCEVLHSKQPLIVYFPDG---LHKSVPKSIQSEFFQKVQEKFELLSGPIVLICGQNK 57
           MEAL EVL S QPLIVYFPD    L ++VPK+ + EF  KV+E F+ LSGPIV+ICGQNK
Sbjct: 436 MEALNEVLQSIQPLIVYFPDSTQWLSRAVPKTRRKEFVDKVKEMFDKLSGPIVMICGQNK 495

Query: 58  AQ--SKGQLLFSMN---------------------KGQKTSKDGEFYKPF-NVLSIQPPK 93
            +  SK +  F+M                       G+  S++ E YK F NV+ + PPK
Sbjct: 496 IETGSKEREKFTMVLPNLSRVVKLPLPLKGLTEGFTGRGKSEENEIYKLFTNVMRLHPPK 555


>AT1G50140.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr1:18569921-18578663
           REVERSE LENGTH=1003
          Length = 1003

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/120 (45%), Positives = 69/120 (57%), Gaps = 27/120 (22%)

Query: 1   MEALCEVLHSKQPLIVYFPDG---LHKSVPKSIQSEFFQKVQEKFELLSGPIVLICGQNK 57
           MEAL EVL S QPLIVYFPD    L ++VPK+ + EF  KV+E F+ LSGPIV+ICGQNK
Sbjct: 458 MEALNEVLQSIQPLIVYFPDSTQWLSRAVPKTRRKEFVDKVKEMFDKLSGPIVMICGQNK 517

Query: 58  AQ--SKGQLLFSMN---------------------KGQKTSKDGEFYKPF-NVLSIQPPK 93
            +  SK +  F+M                       G+  S++ E YK F NV+ + PPK
Sbjct: 518 IETGSKEREKFTMVLPNLSRVVKLPLPLKGLTEGFTGRGKSEENEIYKLFTNVMRLHPPK 577