Miyakogusa Predicted Gene

Lj0g3v0140629.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0140629.1 Non Chatacterized Hit- tr|C6TFP4|C6TFP4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.54676 PE,87.8,0,no
description,NULL; NTF2-like,NULL; NTF2_DOMAIN,Nuclear transport factor
2, Eukaryote; NTF2,Nuclear,CUFF.8600.1
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27970.1 | Symbols: NTF2B | nuclear transport factor 2B | chr...   218   9e-58
AT1G27310.1 | Symbols: NTF2A | nuclear transport factor 2A | chr...   213   2e-56
AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B | chr...   207   1e-54
AT1G11570.2 | Symbols: NTL | NTF2-like | chr1:3883280-3883956 FO...   145   7e-36
AT1G11570.1 | Symbols: NTL | NTF2-like | chr1:3883280-3883663 FO...   114   2e-26
AT5G48650.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    55   1e-08
AT1G13730.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    54   2e-08
AT2G03640.4 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    52   1e-07
AT2G03640.3 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    52   1e-07
AT2G03640.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    51   2e-07
AT2G03640.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    51   2e-07
AT5G60980.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    50   5e-07
AT5G60980.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    50   5e-07
AT3G25150.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    49   1e-06
AT3G25150.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    47   4e-06

>AT1G27970.1 | Symbols: NTF2B | nuclear transport factor 2B |
           chr1:9746921-9747787 FORWARD LENGTH=126
          Length = 126

 Score =  218 bits (554), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 109/123 (88%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQC 60
           MDPDA++KAFVEHYYSTFD+NR  LA LYQE SML+FEGQKIQG  +IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  HHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRL 120
            H I+TVDCQPSG  S MLVFVSGNLQLAGE+HAL FSQMFHLMPT QGS+YV NDIFRL
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123

Query: 121 NYA 123
           NYA
Sbjct: 124 NYA 126


>AT1G27310.1 | Symbols: NTF2A | nuclear transport factor 2A |
           chr1:9484615-9485790 REVERSE LENGTH=122
          Length = 122

 Score =  213 bits (543), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 109/123 (88%), Gaps = 1/123 (0%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQC 60
           MDPDA+AKAFVEHYYSTFD+NR  L +LYQEGSML+FEGQKIQGS NIVAKLT LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  HHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRL 120
            H+ITTVDCQPSG    MLVFVSGNLQLAGEQHAL FSQMFHL+ + QG+YYV NDIFRL
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRL 119

Query: 121 NYA 123
           NYA
Sbjct: 120 NYA 122


>AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B |
           chr1:9746921-9748306 FORWARD LENGTH=134
          Length = 134

 Score =  207 bits (527), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 104/118 (88%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQC 60
           MDPDA++KAFVEHYYSTFD+NR  LA LYQE SML+FEGQKIQG  +IVAKLTSLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  HHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIF 118
            H I+TVDCQPSG  S MLVFVSGNLQLAGE+HAL FSQMFHLMPT QGS+YV NDIF
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121


>AT1G11570.2 | Symbols: NTL | NTF2-like | chr1:3883280-3883956
           FORWARD LENGTH=132
          Length = 132

 Score =  145 bits (365), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/123 (56%), Positives = 88/123 (71%), Gaps = 3/123 (2%)

Query: 4   DALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQCHHS 63
           + +A AFV HYY  FD++R++L++LY   S+L+FEGQ I G  NI  KL  LPF QCHH 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  ITTVDCQPS---GATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRL 120
           I+TVD QPS   G    +LVFVSG++QL GE H L FSQ FHL+P  QGS++V N++FRL
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEMFRL 129

Query: 121 NYA 123
           NY 
Sbjct: 130 NYG 132


>AT1G11570.1 | Symbols: NTL | NTF2-like | chr1:3883280-3883663
           FORWARD LENGTH=127
          Length = 127

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 72/103 (69%), Gaps = 3/103 (2%)

Query: 4   DALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQCHHS 63
           + +A AFV HYY  FD++R++L++LY   S+L+FEGQ I G  NI  KL  LPF QCHH 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  ITTVDCQPS---GATSAMLVFVSGNLQLAGEQHALNFSQMFHL 103
           I+TVD QPS   G    +LVFVSG++QL GE H L FSQ++ L
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112


>AT5G48650.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr5:19727279-19729533 FORWARD LENGTH=458
          Length = 458

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 62/129 (48%), Gaps = 15/129 (11%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQ--------KIQGSSNIVAKL 52
           +DP  +  AFV  YY  F +    L   YQE S +   GQ          QG S  + +L
Sbjct: 11  VDPLTVGSAFVNQYYYIFCNMPEHLPRFYQEISRVGRVGQDGVMRDFSTFQGISEELKRL 70

Query: 53  TSLPFQQCHHS-ITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSY 111
           T   +  C+ + IT+ D Q S      L+FV+G   L  E+    F+Q F L P ++G +
Sbjct: 71  T---YGDCNSAEITSYDTQES-HNGGFLLFVTGYFTL-NERSRRKFTQTFFLAPQEKG-F 124

Query: 112 YVLNDIFRL 120
           +VLNDI R 
Sbjct: 125 FVLNDILRF 133


>AT1G13730.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr1:4710519-4712332 FORWARD LENGTH=428
          Length = 428

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 8/124 (6%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQ-----KIQGSSNIVAKLTSL 55
           +DP+ +  +FVE YY+    + + +   Y + S+L   G       ++    I  ++ S 
Sbjct: 10  VDPNTIGNSFVEKYYNLLYKSPSQVHQFYLDDSVLGRPGSDGEMVSVKSLKAINEQIMSF 69

Query: 56  PFQQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLN 115
            ++     I T D Q S   + ++  V+G L +  E   + FSQ F L+P   GSY+VLN
Sbjct: 70  DYEISKIQILTADSQAS-YMNGVVTLVTGLLTVK-EGQRMRFSQSFFLVPL-NGSYFVLN 126

Query: 116 DIFR 119
           D+FR
Sbjct: 127 DVFR 130


>AT2G03640.4 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr2:1104525-1106418 REVERSE LENGTH=453
          Length = 453

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQ-----KIQGSSNIVAKLTSL 55
           +DP  +   FV+ YY+    + + +   Y E SM+S  G       I+    I  ++ S+
Sbjct: 10  VDPQFVGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIVTIKSLKGINDQIMSI 69

Query: 56  PFQQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLN 115
            ++     I T D Q S   + ++  V+G L +  +     FSQ F L+ ++ GSY+VLN
Sbjct: 70  DYKSSRIEILTADSQ-STLKNGVVTLVTG-LVIGNDGGRRKFSQSFFLV-SRNGSYFVLN 126

Query: 116 DIFR 119
           D FR
Sbjct: 127 DTFR 130


>AT2G03640.3 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr2:1104525-1106418 REVERSE LENGTH=454
          Length = 454

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQ-----KIQGSSNIVAKLTSL 55
           +DP  +   FV+ YY+    + + +   Y E SM+S  G       I+    I  ++ S+
Sbjct: 10  VDPQFVGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIVTIKSLKGINDQIMSI 69

Query: 56  PFQQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLN 115
            ++     I T D Q S   + ++  V+G L +  +     FSQ F L+ ++ GSY+VLN
Sbjct: 70  DYKSSRIEILTADSQ-STLKNGVVTLVTG-LVIGNDGGRRKFSQSFFLV-SRNGSYFVLN 126

Query: 116 DIFR 119
           D FR
Sbjct: 127 DTFR 130


>AT2G03640.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr2:1104525-1106418 REVERSE LENGTH=422
          Length = 422

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQ-----KIQGSSNIVAKLTSL 55
           +DP  +   FV+ YY+    + + +   Y E SM+S  G       I+    I  ++ S+
Sbjct: 10  VDPQFVGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIVTIKSLKGINDQIMSI 69

Query: 56  PFQQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLN 115
            ++     I T D Q S   + ++  V+G L +  +     FSQ F L+ ++ GSY+VLN
Sbjct: 70  DYKSSRIEILTADSQ-STLKNGVVTLVTG-LVIGNDGGRRKFSQSFFLV-SRNGSYFVLN 126

Query: 116 DIFR 119
           D FR
Sbjct: 127 DTFR 130


>AT2G03640.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr2:1104525-1106418 REVERSE LENGTH=423
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 1   MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQ-----KIQGSSNIVAKLTSL 55
           +DP  +   FV+ YY+    + + +   Y E SM+S  G       I+    I  ++ S+
Sbjct: 10  VDPQFVGNGFVQEYYNHLYDSTSEVHKFYLEDSMISRPGLDGEIVTIKSLKGINDQIMSI 69

Query: 56  PFQQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLN 115
            ++     I T D Q S   + ++  V+G L +  +     FSQ F L+ ++ GSY+VLN
Sbjct: 70  DYKSSRIEILTADSQ-STLKNGVVTLVTG-LVIGNDGGRRKFSQSFFLV-SRNGSYFVLN 126

Query: 116 DIFR 119
           D FR
Sbjct: 127 DTFR 130


>AT5G60980.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr5:24543988-24546027 FORWARD LENGTH=459
          Length = 459

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 4   DALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSN-----IVAKLTSLPFQ 58
           + + +AFVE YY     +   +   YQ+ S L+        ++      I  K+ SL ++
Sbjct: 13  EVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLKYE 72

Query: 59  QCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIF 118
                I T D Q S     ++V V+G L    +     FSQ F L P  +G Y+VLND+F
Sbjct: 73  DYTAEIETADAQES-HERGVIVLVTGRLT-GNDNVRKKFSQSFFLAPQDKG-YFVLNDVF 129

Query: 119 RL 120
           R 
Sbjct: 130 RF 131


>AT5G60980.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr5:24543988-24546027 FORWARD LENGTH=460
          Length = 460

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 4   DALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSN-----IVAKLTSLPFQ 58
           + + +AFVE YY     +   +   YQ+ S L+        ++      I  K+ SL ++
Sbjct: 13  EVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLKYE 72

Query: 59  QCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIF 118
                I T D Q S     ++V V+G L    +     FSQ F L P  +G Y+VLND+F
Sbjct: 73  DYTAEIETADAQES-HERGVIVLVTGRLT-GNDNVRKKFSQSFFLAPQDKG-YFVLNDVF 129

Query: 119 RL 120
           R 
Sbjct: 130 RF 131


>AT3G25150.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr3:9157161-9159362 REVERSE LENGTH=488
          Length = 488

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSF--EGQKIQGSSNIVA---KLTSLPF 57
           PD +  AFV  YY     +   +   YQE S L    E   +  +S + A   K+ +L +
Sbjct: 16  PDMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGY 75

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
                 I TVD Q S      +V V+G L    +     FSQ F L P + G Y+VLND+
Sbjct: 76  GVISAEIATVDTQESHG-GGYIVLVTGYLT-GKDSVRRTFSQTFFLAPQETG-YFVLNDM 132

Query: 118 FRL 120
           FR 
Sbjct: 133 FRF 135


>AT3G25150.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein with RNA binding (RRM-RBD-RNP motifs) domain |
           chr3:9157161-9160052 REVERSE LENGTH=587
          Length = 587

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 3   PDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSF--EGQKIQGSSNIVA---KLTSLPF 57
           PD +  AFV  YY     +   +   YQE S L    E   +  +S + A   K+ +L +
Sbjct: 115 PDMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGY 174

Query: 58  QQCHHSITTVDCQPSGATSAMLVFVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDI 117
                 I TVD Q S      +V V+G L    +     FSQ F L P + G Y+VLND+
Sbjct: 175 GVISAEIATVDTQESHG-GGYIVLVTGYL-TGKDSVRRTFSQTFFLAPQETG-YFVLNDM 231

Query: 118 FRL 120
           FR 
Sbjct: 232 FRF 234