Miyakogusa Predicted Gene

Lj0g3v0139599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0139599.1 tr|A9S7Q9|A9S7Q9_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,49.02,1e-16,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.8506.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23230.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   165   5e-42
AT1G23230.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mediator c...   165   5e-42

>AT1G23230.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: response to salt stress; EXPRESSED IN: 24
           plant structures; EXPRESSED DURING: 15 growth stages;
           CONTAINS InterPro DOMAIN/s: Mediator complex subunit
           Med23 (InterPro:IPR021629). | chr1:8244481-8251741
           FORWARD LENGTH=1592
          Length = 1592

 Score =  165 bits (418), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 93/105 (88%), Gaps = 3/105 (2%)

Query: 11  DRMMDYMNMDERSIGMFWVVTYTMAQPACETVMNWLTSAGVIDLLPGPNLQSAERLVATR 70
           +RMMDYMNMD+RSIGMFWVV+YTMAQPACETV+NWL+SAG+ +L   P LQ  +R++ T+
Sbjct: 618 ERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL---PGLQPNDRVMMTQ 674

Query: 71  EVNPLPMSLLSGFSMNLCLKLSYQMEDSLFSGQVVPSIAMVETYT 115
           EV PLPMSLLSGFSMNLCLKL+ QME++LF  QVVPSIAMVETYT
Sbjct: 675 EVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYT 719


>AT1G23230.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Mediator
           complex subunit Med23 (InterPro:IPR021629); Has 187
           Blast hits to 184 proteins in 67 species: Archae - 0;
           Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43;
           Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
           | chr1:8244481-8251741 FORWARD LENGTH=1615
          Length = 1615

 Score =  165 bits (418), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 93/105 (88%), Gaps = 3/105 (2%)

Query: 11  DRMMDYMNMDERSIGMFWVVTYTMAQPACETVMNWLTSAGVIDLLPGPNLQSAERLVATR 70
           +RMMDYMNMD+RSIGMFWVV+YTMAQPACETV+NWL+SAG+ +L   P LQ  +R++ T+
Sbjct: 637 ERMMDYMNMDDRSIGMFWVVSYTMAQPACETVINWLSSAGMAEL---PGLQPNDRVMMTQ 693

Query: 71  EVNPLPMSLLSGFSMNLCLKLSYQMEDSLFSGQVVPSIAMVETYT 115
           EV PLPMSLLSGFSMNLCLKL+ QME++LF  QVVPSIAMVETYT
Sbjct: 694 EVTPLPMSLLSGFSMNLCLKLALQMEEALFVSQVVPSIAMVETYT 738