Miyakogusa Predicted Gene
- Lj0g3v0139469.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0139469.1 tr|D7MGB0|D7MGB0_ARALL Zinc finger (B-box type)
family protein OS=Arabidopsis lyrata subsp. lyrata
G,41.54,2e-19,zf-B_box,Zinc finger, B-box; B-Box-type zinc finger,Zinc
finger, B-box; ZF_BBOX,Zinc finger, B-box; ,CUFF.8486.1
(178 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G38960.1 | Symbols: | B-box type zinc finger family protein ... 211 1e-55
AT2G21320.1 | Symbols: | B-box zinc finger family protein | chr... 209 9e-55
AT4G38960.3 | Symbols: | B-box type zinc finger family protein ... 191 2e-49
AT4G38960.2 | Symbols: | B-box type zinc finger family protein ... 154 2e-38
AT1G78600.1 | Symbols: LZF1, STH3, DBB3 | light-regulated zinc f... 105 1e-23
AT1G78600.2 | Symbols: LZF1 | light-regulated zinc finger protei... 105 1e-23
AT1G75540.1 | Symbols: STH2 | salt tolerance homolog2 | chr1:283... 98 3e-21
AT4G39070.1 | Symbols: | B-box zinc finger family protein | chr... 97 5e-21
AT1G06040.1 | Symbols: STO | B-box zinc finger family protein | ... 95 3e-20
AT1G06040.2 | Symbols: STO | B-box zinc finger family protein | ... 94 4e-20
AT2G31380.1 | Symbols: STH | salt tolerance homologue | chr2:133... 87 8e-18
AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:517... 86 1e-17
AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:105... 86 1e-17
AT2G24790.2 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 | chr2:105... 84 5e-17
AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:858... 84 7e-17
AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487... 82 2e-16
AT5G15840.1 | Symbols: CO, FG | B-box type zinc finger protein w... 80 6e-16
AT2G47890.1 | Symbols: | B-box type zinc finger protein with CC... 79 1e-15
AT5G15840.2 | Symbols: CO, FG | B-box type zinc finger protein w... 79 2e-15
AT4G10240.1 | Symbols: | B-box zinc finger family protein | chr... 79 2e-15
AT2G47890.2 | Symbols: | B-box type zinc finger protein with CC... 77 7e-15
AT1G28050.1 | Symbols: | B-box type zinc finger protein with CC... 68 3e-12
AT1G68190.1 | Symbols: | B-box zinc finger family protein | chr... 68 3e-12
AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:233... 67 5e-12
AT2G33500.2 | Symbols: | B-box type zinc finger protein with CC... 63 8e-11
AT2G33500.1 | Symbols: | B-box type zinc finger protein with CC... 63 9e-11
AT5G48250.1 | Symbols: | B-box type zinc finger protein with CC... 59 1e-09
AT3G07650.4 | Symbols: COL9 | CONSTANS-like 9 | chr3:2442494-244... 57 9e-09
AT3G07650.3 | Symbols: COL9 | CONSTANS-like 9 | chr3:2442494-244... 57 9e-09
AT3G07650.2 | Symbols: COL9 | CONSTANS-like 9 | chr3:2442494-244... 57 9e-09
AT3G07650.1 | Symbols: COL9 | CONSTANS-like 9 | chr3:2442494-244... 57 9e-09
AT4G15250.1 | Symbols: | B-box type zinc finger protein with CC... 54 7e-08
AT1G68520.1 | Symbols: | B-box type zinc finger protein with CC... 53 1e-07
AT3G21880.1 | Symbols: | B-box type zinc finger protein with CC... 52 3e-07
AT1G25440.1 | Symbols: | B-box type zinc finger protein with CC... 51 4e-07
AT1G49130.1 | Symbols: | B-box type zinc finger protein with CC... 49 2e-06
AT1G73870.1 | Symbols: | B-box type zinc finger protein with CC... 49 2e-06
AT1G49130.2 | Symbols: | B-box type zinc finger protein with CC... 49 3e-06
>AT4G38960.1 | Symbols: | B-box type zinc finger family protein |
chr4:18161576-18163045 FORWARD LENGTH=183
Length = 183
Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/179 (60%), Positives = 125/179 (69%), Gaps = 25/179 (13%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
MR LCDACE+AAAI+FCAADEAALC CDEKVHMCNKLASRHVRV LA PS+ P CDICE
Sbjct: 1 MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE 60
Query: 61 NAPAFFYCETDGTSLCLQCDIIVHVGGKRTHGRYLLFRQRIEFPGDKPGHAESPVSHPLN 120
NAPAFFYCE DG+SLCLQCD++VHVGGKRTHGR+LL RQRIEFPGDKP E+ L
Sbjct: 61 NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGRFLLLRQRIEFPGDKP--KENNTRDNL- 117
Query: 121 PGGTKRGANPLPQMKLGEIQQNHRMVPSS--EADAMRETKMIDLNMKPHKIDEQTSNNQ 177
QN R+ + EA+ + +MIDLN P ++ E +SNN
Sbjct: 118 --------------------QNQRVSTNGNGEANGKIDDEMIDLNANPQRVHEPSSNNN 156
>AT2G21320.1 | Symbols: | B-box zinc finger family protein |
chr2:9126502-9127652 FORWARD LENGTH=172
Length = 172
Score = 209 bits (531), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 122/177 (68%), Gaps = 20/177 (11%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
MR LCDACESAAAIVFCAADEAALC +CDEKVH CNKLASRH+RV LA PS+ P CDICE
Sbjct: 1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60
Query: 61 NAPAFFYCETDGTSLCLQCDIIVHVGGKRTHGRYLLFRQRIEFPGDKPGHAESPVSHPLN 120
NAPAFFYCE DG+SLCLQCD++VHVGGKRTH R+LL RQRIEFPGDKP HA+
Sbjct: 61 NAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHAD-------- 112
Query: 121 PGGTKRGANPLPQMKLGEIQQNHRMVPSSEADAMRETKMIDLNMKPHKIDEQTSNNQ 177
Q+ L + + S + + MIDLN P ++ E S+NQ
Sbjct: 113 ------------QLGLRCQKASSGRGQESNGNGDHDHNMIDLNSNPQRVHEPGSHNQ 157
>AT4G38960.3 | Symbols: | B-box type zinc finger family protein |
chr4:18161576-18163045 FORWARD LENGTH=226
Length = 226
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 124/220 (56%), Gaps = 64/220 (29%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEK----------------------------- 31
MR LCDACE+AAAI+FCAADEAALC CDEK
Sbjct: 1 MRILCDACENAAAIIFCAADEAALCRPCDEKALHMRLDISKCSESVKRVQIVETSSLIWW 60
Query: 32 --------------VHMCNKLASRHVRVSLASPSDVPRCDICENAPAFFYCETDGTSLCL 77
VHMCNKLASRHVRV LA PS+ P CDICENAPAFFYCE DG+SLCL
Sbjct: 61 IKMGTFCLQSLHLVVHMCNKLASRHVRVGLAEPSNAPCCDICENAPAFFYCEIDGSSLCL 120
Query: 78 QCDIIVHVGGKRTHGRYLLFRQRIEFPGDKPGHAESPVSHPLNPGGTKRGANPLPQMKLG 137
QCD++VHVGGKRTHGR+LL RQRIEFPGDKP + N ++
Sbjct: 121 QCDMVVHVGGKRTHGRFLLLRQRIEFPGDKP-----------------KENNTRDNLQNQ 163
Query: 138 EIQQNHRMVPSSEADAMRETKMIDLNMKPHKIDEQTSNNQ 177
+ N + EA+ + +MIDLN P ++ E +SNN
Sbjct: 164 RVSTN----GNGEANGKIDDEMIDLNANPQRVHEPSSNNN 199
>AT4G38960.2 | Symbols: | B-box type zinc finger family protein |
chr4:18162300-18163045 FORWARD LENGTH=150
Length = 150
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 95/146 (65%), Gaps = 25/146 (17%)
Query: 34 MCNKLASRHVRVSLASPSDVPRCDICENAPAFFYCETDGTSLCLQCDIIVHVGGKRTHGR 93
MCNKLASRHVRV LA PS+ P CDICENAPAFFYCE DG+SLCLQCD++VHVGGKRTHGR
Sbjct: 1 MCNKLASRHVRVGLAEPSNAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHGR 60
Query: 94 YLLFRQRIEFPGDKPGHAESPVSHPLNPGGTKRGANPLPQMKLGEIQQNHRMVPSS--EA 151
+LL RQRIEFPGDKP E+ L QN R+ + EA
Sbjct: 61 FLLLRQRIEFPGDKP--KENNTRDNL---------------------QNQRVSTNGNGEA 97
Query: 152 DAMRETKMIDLNMKPHKIDEQTSNNQ 177
+ + +MIDLN P ++ E +SNN
Sbjct: 98 NGKIDDEMIDLNANPQRVHEPSSNNN 123
>AT1G78600.1 | Symbols: LZF1, STH3, DBB3 | light-regulated zinc
finger protein 1 | chr1:29567370-29568662 FORWARD
LENGTH=299
Length = 299
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSL-ASPSDVPRCDIC 59
M+ C+ CE+A A V C ADEAALC ACDEK+H NKLA +H RV L AS S +P+CDIC
Sbjct: 1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60
Query: 60 ENAPAFFYCETDGTSLCLQCDIIVHVGGKRT--HGRYLL 96
+ A FF+C D LC +CD+ +H H R+LL
Sbjct: 61 QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLL 99
>AT1G78600.2 | Symbols: LZF1 | light-regulated zinc finger protein
1 | chr1:29567370-29568662 FORWARD LENGTH=319
Length = 319
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSL-ASPSDVPRCDIC 59
M+ C+ CE+A A V C ADEAALC ACDEK+H NKLA +H RV L AS S +P+CDIC
Sbjct: 1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60
Query: 60 ENAPAFFYCETDGTSLCLQCDIIVHVGGKRT--HGRYLL 96
+ A FF+C D LC +CD+ +H H R+LL
Sbjct: 61 QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLL 99
>AT1G75540.1 | Symbols: STH2 | salt tolerance homolog2 |
chr1:28366059-28367398 FORWARD LENGTH=331
Length = 331
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPS----DVPRC 56
M+ CD C+ A VFC ADEA+LC CD +VH NKLAS+H+R SL PS P C
Sbjct: 1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60
Query: 57 DICENAPAFFYCETDGTSLCLQCDIIVHVGGKRT--HGRYLL 96
DIC++ A +C+ D LC CD +H + T H R+LL
Sbjct: 61 DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLL 102
>AT4G39070.1 | Symbols: | B-box zinc finger family protein |
chr4:18205061-18206421 REVERSE LENGTH=242
Length = 242
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPS--DVPRCDI 58
M+ C C+ A VFC ADEAALC+ CD VH NKLA +H+R SL SP+ D P CDI
Sbjct: 1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60
Query: 59 CENAPAFFYCETDGTSLCLQCDIIVHVGGKRT--HGRYLLFRQRI 101
C A +C+ D LC +CDI +H + T H R+LL +I
Sbjct: 61 CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKI 105
>AT1G06040.1 | Symbols: STO | B-box zinc finger family protein |
chr1:1828662-1829659 REVERSE LENGTH=248
Length = 248
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPS-DVPRCDIC 59
M+ CD CE A A V C ADEAALC CD ++H NKLAS+H R+ L S S PRCDIC
Sbjct: 1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60
Query: 60 ENAPAFFYCETDGTSLCLQCDIIVHVGGKRT--HGRYL 95
+ AF +C D LC CD +HV R+ H R+L
Sbjct: 61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFL 98
>AT1G06040.2 | Symbols: STO | B-box zinc finger family protein |
chr1:1828957-1829659 REVERSE LENGTH=177
Length = 177
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPS-DVPRCDIC 59
M+ CD CE A A V C ADEAALC CD ++H NKLAS+H R+ L S S PRCDIC
Sbjct: 1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60
Query: 60 ENAPAFFYCETDGTSLCLQCDIIVHVGGKRT--HGRYLLFRQRIEFPGDKPGHAESPVSH 117
+ AF +C D LC CD +HV R+ H R+L ++ E +
Sbjct: 61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSK-EIEKNQ 119
Query: 118 PLNPGGTKRGANPLP 132
P P ++ AN +P
Sbjct: 120 P-EPSNNQQKANQIP 133
>AT2G31380.1 | Symbols: STH | salt tolerance homologue |
chr2:13382150-13383302 FORWARD LENGTH=238
Length = 238
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPS-DVPRCDIC 59
M+ CD CE A A + C ADEAALC+ CD +VH NKLAS+H R+ L S S P CDIC
Sbjct: 1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60
Query: 60 ENAPAFFYCETDGTSLCLQCDIIVHVGGKRT--HGRYLLFRQRIEFPGD------KPGHA 111
AF +C D LC CD H R+ H R+L R+ + H
Sbjct: 61 LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHF 120
Query: 112 ESPVSHPLNPGGTKRGANPLPQMKLGEI 139
+ L+ T++ A P P E
Sbjct: 121 DPSNQQSLSKPPTQQPAAPSPLWATDEF 148
>AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 |
chr5:5176297-5177473 REVERSE LENGTH=355
Length = 355
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAPA 64
CD C SAA V+C AD A LCS+CD +VH N+LASRH RV + C CE APA
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV--------CQSCERAPA 63
Query: 65 FFYCETDGTSLCLQCDIIVHVGG--KRTHGRY-LLFRQRIEFPGDKPGHA-ESPVSHPLN 120
F+C+ D SLC CD +H R H R +L + H+ E+ V+ P N
Sbjct: 64 AFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPEN 123
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSL 47
+C +CE A A FC AD A+LC+ CD ++H N LA RH RV +
Sbjct: 54 VCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPI 97
>AT2G24790.1 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 |
chr2:10566959-10567946 FORWARD LENGTH=294
Length = 294
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 54/92 (58%), Gaps = 10/92 (10%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAP 63
LCD+C+S AA +FC AD A LC CD K+H NKLASRH RV L C++CE AP
Sbjct: 7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL--------CEVCEQAP 58
Query: 64 AFFYCETDGTSLCLQCDIIVHVGG--KRTHGR 93
A C+ D +LC+ CD +H R H R
Sbjct: 59 AHVTCKADAAALCVTCDRDIHSANPLSRRHER 90
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSL 47
LC+ CE A A V C AD AALC CD +H N L+ RH RV +
Sbjct: 50 LCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPI 93
>AT2G24790.2 | Symbols: COL3, ATCOL3 | CONSTANS-like 3 |
chr2:10566959-10567621 FORWARD LENGTH=220
Length = 220
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 54/92 (58%), Gaps = 10/92 (10%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAP 63
LCD+C+S AA +FC AD A LC CD K+H NKLASRH RV L C++CE AP
Sbjct: 7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL--------CEVCEQAP 58
Query: 64 AFFYCETDGTSLCLQCDIIVHVGG--KRTHGR 93
A C+ D +LC+ CD +H R H R
Sbjct: 59 AHVTCKADAAALCVTCDRDIHSANPLSRRHER 90
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 26/42 (61%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRV 45
LC+ CE A A V C AD AALC CD +H N L+ RH RV
Sbjct: 50 LCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERV 91
>AT5G24930.1 | Symbols: ATCOL4, COL4 | CONSTANS-like 4 |
chr5:8589325-8590949 FORWARD LENGTH=406
Length = 406
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 8/81 (9%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAP 63
LCD+C+SA A ++C D A LC +CD KVH NKLASRH RV + C++CE AP
Sbjct: 49 LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM--------CEVCEQAP 100
Query: 64 AFFYCETDGTSLCLQCDIIVH 84
A C+ D +LC+ CD +H
Sbjct: 101 AHVTCKADAAALCVTCDRDIH 121
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 26/42 (61%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRV 45
+C+ CE A A V C AD AALC CD +H N LA RH RV
Sbjct: 92 MCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERV 133
>AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 |
chr3:487438-488624 REVERSE LENGTH=347
Length = 347
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAPA 64
CD C SAA V+C AD A LC+ CD +VH N++ASRH RV + C CE+APA
Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV--------CQSCESAPA 67
Query: 65 FFYCETDGTSLCLQCDIIVHVGG--KRTHGR 93
F C+ D SLC CD +H R H R
Sbjct: 68 AFLCKADAASLCTACDAEIHSANPLARRHQR 98
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRV 45
+C +CESA A C AD A+LC+ACD ++H N LA RH RV
Sbjct: 58 VCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRV 99
>AT5G15840.1 | Symbols: CO, FG | B-box type zinc finger protein
with CCT domain | chr5:5171343-5172697 REVERSE
LENGTH=373
Length = 373
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAPA 64
CD C S A V+C AD A LC +CD +VH N++ASRH RV + C+ CE APA
Sbjct: 20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV--------CESCERAPA 71
Query: 65 FFYCETDGTSLCLQCDIIVH 84
F CE D SLC CD VH
Sbjct: 72 AFLCEADDASLCTACDSEVH 91
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSL 47
+C++CE A A C AD+A+LC+ACD +VH N LA RH RV +
Sbjct: 62 VCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPI 105
>AT2G47890.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr2:19608245-19609476 FORWARD LENGTH=332
Length = 332
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAP 63
LCD C+S+ A+V+C AD A LC ACD++VH+ N+L ++H R L CD C +P
Sbjct: 12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLL--------CDSCNESP 63
Query: 64 AFFYCETDGTSLCLQCDIIVHVGGKRTHGR 93
+ +CET+ + LC CD H H R
Sbjct: 64 SSLFCETERSVLCQNCDWQHHTASSSLHSR 93
>AT5G15840.2 | Symbols: CO, FG | B-box type zinc finger protein with
CCT domain | chr5:5171873-5172697 REVERSE LENGTH=274
Length = 274
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAPA 64
CD C S A V+C AD A LC +CD +VH N++ASRH RV + C+ CE APA
Sbjct: 20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV--------CESCERAPA 71
Query: 65 FFYCETDGTSLCLQCDIIVHVGG--KRTHGR 93
F CE D SLC CD VH R H R
Sbjct: 72 AFLCEADDASLCTACDSEVHSANPLARRHQR 102
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRV 45
+C++CE A A C AD+A+LC+ACD +VH N LA RH RV
Sbjct: 62 VCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRV 103
>AT4G10240.1 | Symbols: | B-box zinc finger family protein |
chr4:6368967-6369526 REVERSE LENGTH=162
Length = 162
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSL-------ASPSDV 53
M+ C+ CE A A V C +DEA LC CD KVH NKL RH RV+L + S
Sbjct: 1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60
Query: 54 PRCDICENAPAFFYCETDGTSLCLQCDIIVHVGGKRTHGRYLL 96
P CDIC+ +F+C D LC CD +H +H R+LL
Sbjct: 61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN--SHQRFLL 101
>AT2G47890.2 | Symbols: | B-box type zinc finger protein with CCT
domain | chr2:19608245-19609036 FORWARD LENGTH=237
Length = 237
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAP 63
LCD C+S+ A+V+C AD A LC ACD++VH+ N+L ++H R L CD C +P
Sbjct: 12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLL--------CDSCNESP 63
Query: 64 AFFYCETDGTSLCLQCDIIVHVGGKRTHGR 93
+ +CET+ + LC CD H H R
Sbjct: 64 SSLFCETERSVLCQNCDWQHHTASSSLHSR 93
>AT1G28050.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr1:9775768-9777657 REVERSE LENGTH=433
Length = 433
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 2 RTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICEN 61
R CD C A++FC AD A LC CD++VH N L+ +HVR + CD C N
Sbjct: 6 RVPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQI--------CDNCGN 57
Query: 62 APAFFYCETDGTSLCLQCDIIVH 84
P C TD LC +CD VH
Sbjct: 58 EPVSVRCFTDNLILCQECDWDVH 80
>AT1G68190.1 | Symbols: | B-box zinc finger family protein |
chr1:25559384-25561004 FORWARD LENGTH=356
Length = 356
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
M +C+ C++ A+V+C AD A LC CD KVH N L+ RH+R L CD C+
Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVL--------CDSCK 61
Query: 61 NAPAFFYCETDGTSLCLQCDIIVHVGGKRTHGR 93
N P C LC C+ H GG H R
Sbjct: 62 NQPCVVRCFDHKMFLCHGCNDKFHGGGSSEHRR 94
>AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 |
chr5:23355573-23356729 FORWARD LENGTH=355
Length = 355
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 12/80 (15%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAPA 64
CDAC+S A VFC D A LC ACD ++H +RH RV + C++CE APA
Sbjct: 22 CDACKSVTAAVFCRVDSAFLCIACDTRIHSF----TRHERVWV--------CEVCEQAPA 69
Query: 65 FFYCETDGTSLCLQCDIIVH 84
C+ D +LC+ CD +H
Sbjct: 70 AVTCKADAAALCVSCDADIH 89
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 4 LCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSD 52
+C+ CE A A V C AD AALC +CD +H N LASRH RV + + D
Sbjct: 60 VCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFD 108
>AT2G33500.2 | Symbols: | B-box type zinc finger protein with CCT
domain | chr2:14188159-14190046 REVERSE LENGTH=401
Length = 401
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAPA 64
C+ C A++FC AD A LC CD+ VH N L+ +HVR + CD C P
Sbjct: 12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQI--------CDNCSKEPV 63
Query: 65 FFYCETDGTSLCLQCDIIVH 84
C TD LC +CD VH
Sbjct: 64 SVRCFTDNLVLCQECDWDVH 83
>AT2G33500.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr2:14188159-14190046 REVERSE LENGTH=402
Length = 402
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICENAPA 64
C+ C A++FC AD A LC CD+ VH N L+ +HVR + CD C P
Sbjct: 12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQI--------CDNCSKEPV 63
Query: 65 FFYCETDGTSLCLQCDIIVH 84
C TD LC +CD VH
Sbjct: 64 SVRCFTDNLVLCQECDWDVH 83
>AT5G48250.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr5:19561719-19563113 REVERSE LENGTH=373
Length = 373
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
M +CD C ++V+C +D A LC +CD VH N L+ RH R + C+ C
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLV--------CERCN 52
Query: 61 NAPAFFYCETDGTSLCLQCDIIVHVGGKRT 90
PA C + SLC CD H G T
Sbjct: 53 AQPASVRCSDERVSLCQNCDWSGHDGKNST 82
>AT3G07650.4 | Symbols: COL9 | CONSTANS-like 9 |
chr3:2442494-2443901 FORWARD LENGTH=372
Length = 372
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
M +CD C ++V+C +D A LC +CD VH N L+ RH R + C+ C
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV--------CERCN 52
Query: 61 NAPAFFYCETDGTSLCLQCDIIVH 84
PA C + SLC CD H
Sbjct: 53 AQPATVRCVEERVSLCQNCDWSGH 76
>AT3G07650.3 | Symbols: COL9 | CONSTANS-like 9 |
chr3:2442494-2443901 FORWARD LENGTH=372
Length = 372
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
M +CD C ++V+C +D A LC +CD VH N L+ RH R + C+ C
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV--------CERCN 52
Query: 61 NAPAFFYCETDGTSLCLQCDIIVH 84
PA C + SLC CD H
Sbjct: 53 AQPATVRCVEERVSLCQNCDWSGH 76
>AT3G07650.2 | Symbols: COL9 | CONSTANS-like 9 |
chr3:2442494-2443901 FORWARD LENGTH=372
Length = 372
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
M +CD C ++V+C +D A LC +CD VH N L+ RH R + C+ C
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV--------CERCN 52
Query: 61 NAPAFFYCETDGTSLCLQCDIIVH 84
PA C + SLC CD H
Sbjct: 53 AQPATVRCVEERVSLCQNCDWSGH 76
>AT3G07650.1 | Symbols: COL9 | CONSTANS-like 9 |
chr3:2442494-2443901 FORWARD LENGTH=372
Length = 372
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
M +CD C ++V+C +D A LC +CD VH N L+ RH R + C+ C
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV--------CERCN 52
Query: 61 NAPAFFYCETDGTSLCLQCDIIVH 84
PA C + SLC CD H
Sbjct: 53 AQPATVRCVEERVSLCQNCDWSGH 76
>AT4G15250.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr4:8709942-8711106 REVERSE LENGTH=330
Length = 330
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
M CD C + A+++C +D A LC CD VH N L+ RH R L C+ C
Sbjct: 1 MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLL--------CEKCS 52
Query: 61 NAPAFFYCETDGTSLCLQC 79
P +C + SLC C
Sbjct: 53 LQPTAVHCMNENVSLCQGC 71
>AT1G68520.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr1:25709331-25710749 REVERSE LENGTH=406
Length = 406
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 29/47 (61%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPS 51
CD+C A +CAAD+A LC ACD VH N LA RH RV L S S
Sbjct: 17 CDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHERVRLKSAS 63
>AT3G21880.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr3:7706748-7708093 FORWARD LENGTH=364
Length = 364
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 1 MRTLCDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPSDVPRCDICE 60
M CD C ++ A+++C +D A LC CD VH N L+ RH+R + C+ C
Sbjct: 1 MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLI--------CEKCF 52
Query: 61 NAPAFFYCETDGTSLCLQC 79
+ PA C + S C C
Sbjct: 53 SQPAAIRCLDEKVSYCQGC 71
>AT1G25440.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr1:8933939-8935284 REVERSE LENGTH=417
Length = 417
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSL--ASPSDVPRCDICENA 62
CD+C A +CAAD+A LC +CD VH N LA RH RV L ASP+ V + +
Sbjct: 17 CDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERVRLKTASPAVVKHSNHSSAS 76
Query: 63 P 63
P
Sbjct: 77 P 77
>AT1G49130.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr1:18174741-18175936 REVERSE LENGTH=326
Length = 326
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLAS 49
C+ C + A+ +CA+D+A LC CDE VH N +A++H RV L +
Sbjct: 28 CELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERVCLRT 72
>AT1G73870.1 | Symbols: | B-box type zinc finger protein with CCT
domain | chr1:27779214-27780522 FORWARD LENGTH=392
Length = 392
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 5 CDAC-ESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLASPS 51
CDAC + + A +C AD+A LC +CD +H N LA RH RV L S S
Sbjct: 22 CDACMKRSRASWYCPADDAFLCQSCDASIHSANHLAKRHERVRLQSSS 69
>AT1G49130.2 | Symbols: | B-box type zinc finger protein with CCT
domain | chr1:18174741-18175811 REVERSE LENGTH=319
Length = 319
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 5 CDACESAAAIVFCAADEAALCSACDEKVHMCNKLASRHVRVSLAS 49
C+ C + A+ +CA+D+A LC CDE VH N +A++H RV L +
Sbjct: 21 CELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERVCLRT 65