Miyakogusa Predicted Gene

Lj0g3v0138819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0138819.1 Non Chatacterized Hit- tr|I3T5G8|I3T5G8_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,82.14,9e-19,SYNTAXIN, ARABIDOPSIS THALIANA,NULL; SYNTAXIN,NULL;
coiled-coil,NULL; no description,NULL,CUFF.8435.1
         (105 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08080.3 | Symbols: SYP132 | syntaxin of plants 132 | chr5:25...    83   3e-17
AT5G08080.1 | Symbols: SYP132, ATSYP132 | syntaxin of plants 132...    83   4e-17
AT5G08080.2 | Symbols: SYP132, ATSYP132 | syntaxin of plants 132...    82   7e-17
AT3G03800.1 | Symbols: SYP131, ATSYP131 | syntaxin of plants 131...    80   2e-16
AT3G11820.1 | Symbols: SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1, ...    55   1e-08
AT3G11820.2 | Symbols: SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1, ...    55   1e-08

>AT5G08080.3 | Symbols: SYP132 | syntaxin of plants 132 |
           chr5:2588532-2591106 FORWARD LENGTH=315
          Length = 315

 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 41/49 (83%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATT 49
           M KDVDEV   A FIK K+EELD+ENLANRQKPGC KGS VDRSRTATT
Sbjct: 92  MEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATT 140


>AT5G08080.1 | Symbols: SYP132, ATSYP132 | syntaxin of plants 132 |
           chr5:2588532-2591106 FORWARD LENGTH=304
          Length = 304

 Score = 83.2 bits (204), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 41/49 (83%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATT 49
           M KDVDEV   A FIK K+EELD+ENLANRQKPGC KGS VDRSRTATT
Sbjct: 81  MEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATT 129


>AT5G08080.2 | Symbols: SYP132, ATSYP132 | syntaxin of plants 132 |
           chr5:2588532-2590488 FORWARD LENGTH=223
          Length = 223

 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 41/49 (83%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATT 49
           M KDVDEV   A FIK K+EELD+ENLANRQKPGC KGS VDRSRTATT
Sbjct: 81  MEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATT 129


>AT3G03800.1 | Symbols: SYP131, ATSYP131 | syntaxin of plants 131 |
           chr3:969314-971460 FORWARD LENGTH=306
          Length = 306

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTMSV 52
           M +DVDEV + + FIK K+EELD+ENL NR KPGCGKG+ VDR+RTATT++V
Sbjct: 82  MERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAV 133


>AT3G11820.1 | Symbols: SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1,
           PEN1 | syntaxin of plants 121 | chr3:3729540-3730868
           REVERSE LENGTH=346
          Length = 346

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 36/63 (57%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTMSVMIQLFISH 60
           M  DV    K A  IK K+E LD+ N ANR  PGCG GS+ DR+RT+    +  +L  S 
Sbjct: 91  MDGDVGVALKKAKMIKVKLEALDRANAANRSLPGCGPGSSSDRTRTSVLNGLRKKLMDSM 150

Query: 61  DYF 63
           D F
Sbjct: 151 DSF 153


>AT3G11820.2 | Symbols: SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1,
           PEN1 | syntaxin of plants 121 | chr3:3729540-3730775
           REVERSE LENGTH=315
          Length = 315

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 36/63 (57%)

Query: 1   MGKDVDEVKKTAHFIKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTMSVMIQLFISH 60
           M  DV    K A  IK K+E LD+ N ANR  PGCG GS+ DR+RT+    +  +L  S 
Sbjct: 60  MDGDVGVALKKAKMIKVKLEALDRANAANRSLPGCGPGSSSDRTRTSVLNGLRKKLMDSM 119

Query: 61  DYF 63
           D F
Sbjct: 120 DSF 122