Miyakogusa Predicted Gene

Lj0g3v0138499.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0138499.1 Non Chatacterized Hit- tr|I1J6N1|I1J6N1_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,38.46,1e-18,DNA/RNA
polymerases,NULL; DUF2930,Protein of unknown function DUF2930;
RETROVIRUS POLYPROTEIN,NULL; ,CUFF.8423.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52110.2 | Symbols: HCF208 | Protein of unknown function (DUF...   151   3e-37
AT5G52110.1 | Symbols: HCF208, CCB2 | Protein of unknown functio...   151   3e-37

>AT5G52110.2 | Symbols: HCF208 | Protein of unknown function
           (DUF2930) | chr5:21172159-21173953 REVERSE LENGTH=275
          Length = 275

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 101/141 (71%), Gaps = 6/141 (4%)

Query: 7   ICFKPCVPSKVLYPRTSSTKFTTMVRASLQDPQPPNTSQQQQLNLSVLRFTLGIPGFDES 66
           IC  P  P   L PR   +   T + A  ++  P + +  QQLNLSVLRFT GIPGFDES
Sbjct: 5   ICNFPFHPKFALQPRAQRS---TRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDES 61

Query: 67  YLPRWIGYGFGSLLLLNHFLGSDSATVTPAQLSTEVLGMSLASFSIVLPYLGKFLKGAQP 126
           YLPRWIGYGFGSLLLLNHF  S SA ++ +Q+ +E LG+SLA+FSI LPY+GKFLKG+  
Sbjct: 62  YLPRWIGYGFGSLLLLNHF--SASAPISESQMRSEALGLSLAAFSIALPYIGKFLKGSV- 118

Query: 127 VDQTTLPDGTQQIFVMSTELA 147
           V+Q +LP+  +Q+FV+S+ + 
Sbjct: 119 VEQRSLPEEGEQVFVISSNIG 139


>AT5G52110.1 | Symbols: HCF208, CCB2 | Protein of unknown function
           (DUF2930) | chr5:21172653-21173953 REVERSE LENGTH=275
          Length = 275

 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 101/141 (71%), Gaps = 6/141 (4%)

Query: 7   ICFKPCVPSKVLYPRTSSTKFTTMVRASLQDPQPPNTSQQQQLNLSVLRFTLGIPGFDES 66
           IC  P  P   L PR   +   T + A  ++  P + +  QQLNLSVLRFT GIPGFDES
Sbjct: 5   ICNFPFHPKFALQPRAQRS---TRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDES 61

Query: 67  YLPRWIGYGFGSLLLLNHFLGSDSATVTPAQLSTEVLGMSLASFSIVLPYLGKFLKGAQP 126
           YLPRWIGYGFGSLLLLNHF  S SA ++ +Q+ +E LG+SLA+FSI LPY+GKFLKG+  
Sbjct: 62  YLPRWIGYGFGSLLLLNHF--SASAPISESQMRSEALGLSLAAFSIALPYIGKFLKGSV- 118

Query: 127 VDQTTLPDGTQQIFVMSTELA 147
           V+Q +LP+  +Q+FV+S+ + 
Sbjct: 119 VEQRSLPEEGEQVFVISSNIG 139