Miyakogusa Predicted Gene

Lj0g3v0137419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0137419.1 Non Chatacterized Hit- tr|I1MNY1|I1MNY1_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,76.27,3e-18,
,CUFF.8386.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34380.2 | Symbols:  | 5'-3' exonuclease family protein | chr...    72   6e-14
AT1G34380.1 | Symbols:  | 5'-3' exonuclease family protein | chr...    72   8e-14

>AT1G34380.2 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:12552839-12554299 REVERSE LENGTH=347
          Length = 347

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query: 73  EKKTGKKRVFFLDVNPLCYEGSKPSMHSFGRWLSLFLSQVTNNDPVI 119
           E +   KRVFFLDV+PLCYEG+KPS  +FG W+SLF SQV+  DPVI
Sbjct: 67  EIRKKNKRVFFLDVSPLCYEGNKPSSQAFGHWISLFFSQVSLTDPVI 113


>AT1G34380.1 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:12553297-12554299 REVERSE LENGTH=264
          Length = 264

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 37/47 (78%)

Query: 73  EKKTGKKRVFFLDVNPLCYEGSKPSMHSFGRWLSLFLSQVTNNDPVI 119
           E +   KRVFFLDV+PLCYEG+KPS  +FG W+SLF SQV+  DPVI
Sbjct: 67  EIRKKNKRVFFLDVSPLCYEGNKPSSQAFGHWISLFFSQVSLTDPVI 113