Miyakogusa Predicted Gene

Lj0g3v0136739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0136739.1 tr|I0YJ67|I0YJ67_9CHLO
S-adenosyl-L-methionine-dependent methyltransferase (Fragment)
OS=Coccomyxa s,51.49,3e-19,S-adenosyl-L-methionine-dependent
methyltransferases,NULL; DNA_methylase,C-5 cytosine
methyltransfer,gene.g10430.t1.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69770.1 | Symbols: CMT3 | chromomethylase 3 | chr1:26248496-...   169   4e-43
AT4G19020.1 | Symbols: CMT2 | chromomethylase 2 | chr4:10414526-...   158   8e-40
AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:303...   147   2e-36
AT4G13610.1 | Symbols: MEE57 | DNA (cytosine-5-)-methyltransfera...    81   2e-16
AT4G14140.2 | Symbols: DMT2 | DNA methyltransferase 2 | chr4:814...    76   5e-15
AT4G14140.1 | Symbols: MET2, DMT02, DMT2, MET02 | DNA methyltran...    76   6e-15
AT4G08990.1 | Symbols:  | DNA (cytosine-5-)-methyltransferase fa...    76   6e-15
AT5G49160.1 | Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 | met...    75   1e-14

>AT1G69770.1 | Symbols: CMT3 | chromomethylase 3 |
           chr1:26248496-26253519 REVERSE LENGTH=839
          Length = 839

 Score =  169 bits (428), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 90/110 (81%), Gaps = 1/110 (0%)

Query: 21  RPFARLWWDETVPTVVTRAEPHNQAILHPEQDRVLSIRENARLQGFPDYYKLCGPVKQRY 80
           +PF RLWWDE VPTVVTRAEPHNQ I+HPEQ+RVLSIRENARLQGFPD YKL GP KQ+Y
Sbjct: 728 KPFGRLWWDEIVPTVVTRAEPHNQVIIHPEQNRVLSIRENARLQGFPDDYKLFGPPKQKY 787

Query: 81  IQVGNAVAVPVARALGYTLGLAFQG-AVGDGPLYKLVDGFPMNFPSSSSE 129
           IQVGNAVAVPVA+ALGY LG AFQG AVG  PL  L +GF    P+  SE
Sbjct: 788 IQVGNAVAVPVAKALGYALGTAFQGLAVGKDPLLTLPEGFAFMKPTLPSE 837


>AT4G19020.1 | Symbols: CMT2 | chromomethylase 2 |
            chr4:10414526-10420936 FORWARD LENGTH=1295
          Length = 1295

 Score =  158 bits (400), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 86/107 (80%), Gaps = 4/107 (3%)

Query: 21   RPFARLWWDETVPTVVTRAEPHNQAILHPEQDRVLSIRENARLQGFPDYYKLCGPVKQRY 80
            RPFARLWWDETVPTV+T    H+QA+LHPEQDRVL+IRE+ARLQGFPDY++ CG +K+RY
Sbjct: 1183 RPFARLWWDETVPTVLTVPTCHSQALLHPEQDRVLTIRESARLQGFPDYFQFCGTIKERY 1242

Query: 81   IQVGNAVAVPVARALGYTLGLAFQGAVGDGPLYKLVDGFPMNFPSSS 127
             Q+GNAVAV V+RALGY+LG+AF+G   D  L KL    P NF  S+
Sbjct: 1243 CQIGNAVAVSVSRALGYSLGMAFRGLARDEHLIKL----PQNFSHST 1285


>AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 |
           chr1:30342394-30346831 FORWARD LENGTH=791
          Length = 791

 Score =  147 bits (370), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/100 (68%), Positives = 79/100 (79%)

Query: 21  RPFARLWWDETVPTVVTRAEPHNQAILHPEQDRVLSIRENARLQGFPDYYKLCGPVKQRY 80
           +PF RLW DE V TVVTRAEPHNQ ++HP Q+RVLS+RENARLQGFPD YKLCG +K++Y
Sbjct: 683 KPFGRLWGDEIVNTVVTRAEPHNQCVIHPMQNRVLSVRENARLQGFPDCYKLCGTIKEKY 742

Query: 81  IQVGNAVAVPVARALGYTLGLAFQGAVGDGPLYKLVDGFP 120
           IQVGNAVAVPV  ALGY  G+A QG   D P+ KL   +P
Sbjct: 743 IQVGNAVAVPVGVALGYAFGMASQGLTDDEPVIKLPFKYP 782


>AT4G13610.1 | Symbols: MEE57 | DNA (cytosine-5-)-methyltransferase
            family protein | chr4:7915022-7921231 FORWARD LENGTH=1404
          Length = 1404

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 2/84 (2%)

Query: 23   FARLWWDETVPTVVTRAEPHNQA--ILHPEQDRVLSIRENARLQGFPDYYKLCGPVKQRY 80
            + RL W   +PT +T  +P        HP+QDR++S+RE AR QGFPD YK  G +K ++
Sbjct: 1317 YGRLDWHGNLPTCITNLQPMGLVGMCFHPDQDRIISVRECARSQGFPDSYKFSGNIKDKH 1376

Query: 81   IQVGNAVAVPVARALGYTLGLAFQ 104
             QVGNAV  P+A ALG  L  A  
Sbjct: 1377 RQVGNAVPPPLAFALGRKLKEALH 1400


>AT4G14140.2 | Symbols: DMT2 | DNA methyltransferase 2 |
            chr4:8146345-8152131 FORWARD LENGTH=1545
          Length = 1545

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 23   FARLWWDETVPTVVTRAEPHNQA--ILHPEQDRVLSIRENARLQGFPDYYKLCGPVKQRY 80
            + RL W   +P  +T  +P  +     HPEQDR++++RE AR QGFPD Y+  G  K ++
Sbjct: 1453 YGRLDWQGNLPISITDPQPMGKVGMCFHPEQDRIITVRECARSQGFPDSYEFSGTTKHKH 1512

Query: 81   IQVGNAVAVPVARALGYTLGLAF 103
             Q+GNAV  P+A ALG  L  A 
Sbjct: 1513 RQIGNAVPPPLAFALGRKLKEAL 1535


>AT4G14140.1 | Symbols: MET2, DMT02, DMT2, MET02 | DNA
            methyltransferase 2 | chr4:8146345-8152131 FORWARD
            LENGTH=1519
          Length = 1519

 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 23   FARLWWDETVPTVVTRAEPHNQA--ILHPEQDRVLSIRENARLQGFPDYYKLCGPVKQRY 80
            + RL W   +P  +T  +P  +     HPEQDR++++RE AR QGFPD Y+  G  K ++
Sbjct: 1427 YGRLDWQGNLPISITDPQPMGKVGMCFHPEQDRIITVRECARSQGFPDSYEFSGTTKHKH 1486

Query: 81   IQVGNAVAVPVARALGYTLGLAF 103
             Q+GNAV  P+A ALG  L  A 
Sbjct: 1487 RQIGNAVPPPLAFALGRKLKEAL 1509


>AT4G08990.1 | Symbols:  | DNA (cytosine-5-)-methyltransferase family
            protein | chr4:5764781-5770496 FORWARD LENGTH=1512
          Length = 1512

 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 23   FARLWWDETVPTVVTRAEPHNQA--ILHPEQDRVLSIRENARLQGFPDYYKLCGPVKQRY 80
            + RL W   +P  +T  +P  +     HPEQDR++++RE AR QGFPD Y+  G  K ++
Sbjct: 1420 YGRLDWQGNLPISITDPQPMGKVGMCFHPEQDRIITVRECARSQGFPDSYEFSGTTKHKH 1479

Query: 81   IQVGNAVAVPVARALGYTLGLAF 103
             Q+GNAV  P+A ALG  L  A 
Sbjct: 1480 RQIGNAVPPPLAFALGRKLKEAL 1502


>AT5G49160.1 | Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 |
            methyltransferase 1 | chr5:19932501-19938186 FORWARD
            LENGTH=1534
          Length = 1534

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 23   FARLWWDETVPTVVTRAEPHNQA--ILHPEQDRVLSIRENARLQGFPDYYKLCGPVKQRY 80
            + RL W    PT VT  +P  +     HPEQ R+L++RE AR QGFPD Y+  G +  ++
Sbjct: 1442 YGRLDWQGNFPTSVTDPQPMGKVGMCFHPEQHRILTVRECARSQGFPDSYEFAGNINHKH 1501

Query: 81   IQVGNAVAVPVARALGYTLGLAFQ 104
             Q+GNAV  P+A ALG  L  A  
Sbjct: 1502 RQIGNAVPPPLAFALGRKLKEALH 1525