Miyakogusa Predicted Gene

Lj0g3v0136329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0136329.1 Non Chatacterized Hit- tr|I3S4C3|I3S4C3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,75,0.0000000000004,Diaminopimelate epimerase-like,NULL;
PhzC-PhzF,Phenazine biosynthesis PhzF protein; no
description,N,gene.Ljchr0_pseudomol_20120828.path1.gene13636.1
         (62 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03210.1 | Symbols:  | Phenazine biosynthesis PhzC/PhzF prote...    59   6e-10
AT4G02850.1 | Symbols:  | phenazine biosynthesis PhzC/PhzF famil...    59   8e-10
AT4G02860.1 | Symbols:  | Phenazine biosynthesis PhzC/PhzF prote...    57   2e-09

>AT1G03210.1 | Symbols:  | Phenazine biosynthesis PhzC/PhzF
          protein | chr1:782948-784240 FORWARD LENGTH=286
          Length = 286

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 12/53 (22%)

Query: 2  EKKPVKYHVHCTESEFGMQVDAFTESAFKGNPAAVCLLE--QERDDEWLQAVA 52
          EKK VKY +          VDAF ESAFKGNPAAVC LE   ERDD WLQ++A
Sbjct: 3  EKKRVKYFI----------VDAFAESAFKGNPAAVCFLEDDNERDDAWLQSLA 45


>AT4G02850.1 | Symbols:  | phenazine biosynthesis PhzC/PhzF family
          protein | chr4:1266535-1268569 REVERSE LENGTH=306
          Length = 306

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 36/54 (66%), Gaps = 12/54 (22%)

Query: 1  MEKKPVKYHVHCTESEFGMQVDAFTESAFKGNPAAVCLLEQ--ERDDEWLQAVA 52
          + KKPVKY            VDAFTESAFKGN AAVC LE+  ERDD WLQ++A
Sbjct: 4  LVKKPVKY----------FMVDAFTESAFKGNQAAVCFLEEDHERDDVWLQSMA 47


>AT4G02860.1 | Symbols:  | Phenazine biosynthesis PhzC/PhzF
          protein | chr4:1268952-1270508 REVERSE LENGTH=313
          Length = 313

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 36/53 (67%), Gaps = 12/53 (22%)

Query: 2  EKKPVKYHVHCTESEFGMQVDAFTESAFKGNPAAVCLL--EQERDDEWLQAVA 52
          +KK VKY V          VDAFT+SAFKGNPAAVC L  + ERDD WLQ++A
Sbjct: 22 KKKGVKYFV----------VDAFTDSAFKGNPAAVCFLNDDNERDDTWLQSLA 64