Miyakogusa Predicted Gene

Lj0g3v0135739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0135739.1 tr|Q19PK7|Q19PK7_POPTR NBS-LRR type disease
resistance protein OS=Populus trichocarpa
GN=POPTRDRAFT_,45.45,4e-19,no description,NULL;
RNI-like,NULL,CUFF.8316.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07040.1 | Symbols: RPM1, RPS3 | NB-ARC domain-containing dis...    69   9e-13

>AT3G07040.1 | Symbols: RPM1, RPS3 | NB-ARC domain-containing
           disease resistance protein | chr3:2226244-2229024
           REVERSE LENGTH=926
          Length = 926

 Score = 68.9 bits (167), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 4/130 (3%)

Query: 1   MTSLQALSYLSLEDDEAGELIKELGKLSQLRVLGLNRVREGQGSALCSSLNKMQQLEKLS 60
           +  LQ +   + ED    ELIK LG ++QL  + L  VR   G  LC SLNK++++  LS
Sbjct: 683 LKDLQVMDCFNAED----ELIKNLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLS 738

Query: 61  VYVTQPDEVIDLHLISTLPLLRSLFLKMKLNKLPEWVPSLQYLVQLTLEDSELTVDPFTS 120
           +     +E +++  +     +  LFL  KL ++P W  +LQ L  L L  S+L  +   S
Sbjct: 739 LTSIDEEEPLEIDDLIATASIEKLFLAGKLERVPSWFNTLQNLTYLGLRGSQLQENAILS 798

Query: 121 LQNLPNLLRL 130
           +Q LP L+ L
Sbjct: 799 IQTLPRLVWL 808