Miyakogusa Predicted Gene

Lj0g3v0134409.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0134409.1 NODE_31136_length_1917_cov_51.770996.path1.1
         (346 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   254   6e-68
AT1G22490.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   241   7e-64
AT5G65320.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   169   3e-42
AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-b...   166   1e-41
AT5G46690.1 | Symbols: bHLH071 | beta HLH protein 71 | chr5:1894...   163   2e-40
AT4G01460.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   160   1e-39
AT2G46810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   150   9e-37
AT3G61950.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   150   1e-36
AT3G61950.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   149   2e-36
AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH) DNA-...   120   1e-27
AT5G53210.1 | Symbols: SPCH | basic helix-loop-helix (bHLH) DNA-...    93   2e-19
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |...    65   7e-11
AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH) DNA-b...    62   6e-10
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHL...    55   5e-08
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran...    55   5e-08
AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel...    55   8e-08
AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel...    55   8e-08
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel...    55   8e-08
AT4G37850.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    54   1e-07
AT1G49770.1 | Symbols: RGE1, ZOU | basic helix-loop-helix (bHLH)...    54   1e-07
AT5G46760.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-bind...    52   9e-07

>AT1G72210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:27180066-27182268 FORWARD
           LENGTH=320
          Length = 320

 Score =  254 bits (649), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 167/360 (46%), Positives = 214/360 (59%), Gaps = 59/360 (16%)

Query: 1   MALEAVVFPQDPFTY-NYKDY-LYSLVGGNPPSEGSNWNRHEYGSFAEEEKALLGIINSN 58
           MALEAVV+PQDPF+Y + KD+  Y L                   F EEE        +N
Sbjct: 1   MALEAVVYPQDPFSYISCKDFPFYDLY------------------FQEEEDQDPQDTKNN 42

Query: 59  IE------HNLHAN-WDSST---SPSVVQNVKDQCDSHSSPEACIIDYSSPGTDNLPPSI 108
           I+      H   +N ++  T   S     N +D       P    +D     T++ PP  
Sbjct: 43  IKLGQGQGHGFASNNYNGRTGDYSDDYNYNEEDLQWPRDLPYGSAVD-----TESQPPPS 97

Query: 109 TTAATVTGRRKRRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQR 168
             AA    RRKRR T+S+KN+E+IENQRMTHIAVERNRRKQMNEYLAVLRSLMPP Y QR
Sbjct: 98  DVAAGGG-RRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQR 156

Query: 169 GDQASIIGGAINFVKELEQLLQCMKGRNIKTKEQQQQWHE-----DGSSSSPFAEFFMFP 223
           GDQASI+GGAIN++KELE  LQ M+       E     H+       SSS PF++FF FP
Sbjct: 157 GDQASIVGGAINYLKELEHHLQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFP 216

Query: 224 QYSTRATSEGSTSYPNTCCEATVAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLVK 283
           QYS R TS  +                      A+IEVT+V+ HA++KIL+KK+P QL+K
Sbjct: 217 QYSNRPTSAAAAE------------------GMAEIEVTMVESHASLKILAKKRPRQLLK 258

Query: 284 MVLGMQSLGFIILHLNVTTVEDMVLASVSVKVEEGCELNTVDEIAAAMNQLSSTVQEEAA 343
           +V  +QSL   +LHLNVTT +D VL S+SVKVEEG +LNTV++IAAA+NQ+   ++EE++
Sbjct: 259 LVSSIQSLRLTLLHLNVTTRDDSVLYSISVKVEEGSQLNTVEDIAAAVNQILRRIEEESS 318


>AT1G22490.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:7938448-7940489 REVERSE
           LENGTH=304
          Length = 304

 Score =  241 bits (614), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 153/350 (43%), Positives = 205/350 (58%), Gaps = 54/350 (15%)

Query: 1   MALEAVVFPQDPFTY--NYKDY----LYSLVGGNPPSEGSNWNR--HEYGSFAEEEKALL 52
           M LEAVV+PQDPF Y  N KD+    LYS          +N ++  HE  SF E+ K   
Sbjct: 1   MPLEAVVYPQDPFGYLSNCKDFMFHDLYSQEEFVAQDTKNNIDKLGHE-QSFVEQGKE-- 57

Query: 53  GIINSNIEHNLHANWDSSTSPSVVQNVKDQCDSHSSPEACIIDYSSPGTDNLPPSITTAA 112
                    + H   D    P ++ ++ ++           ID  S    + PP      
Sbjct: 58  ---------DDHQWRDYHQYPLLIPSLGEELG------LTAIDVES----HPPPQHRRKR 98

Query: 113 TVTGRRKRRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQA 172
                     T++ KN+E+IENQRMTHIAVERNRRKQMNEYLAVLRSLMP SY QRGDQA
Sbjct: 99  R--------RTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQA 150

Query: 173 SIIGGAINFVKELEQLLQCMKGRNIKTKEQQQQWHEDGSSSSPFAEFFMFPQYSTRATSE 232
           SI+GGAIN+VKELE +LQ M+ +  +T + +       S   PF +FF FPQYST+++S+
Sbjct: 151 SIVGGAINYVKELEHILQSMEPKRTRTHDPKGDKTSTSSLVGPFTDFFSFPQYSTKSSSD 210

Query: 233 GSTSYPNTCCEATVAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLVKMVLGMQSLG 292
              S                  + A+IEVT+ + HANIKI++KK+P QL+K++  +QSL 
Sbjct: 211 VPESS----------------SSPAEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLR 254

Query: 293 FIILHLNVTTVEDMVLASVSVKVEEGCELNTVDEIAAAMNQLSSTVQEEA 342
             +LHLNVTT+ + +L S+SV+VEEG +LNTVD+IA A+NQ    +QEE 
Sbjct: 255 LTLLHLNVTTLHNSILYSISVRVEEGSQLNTVDDIATALNQTIRRIQEET 304


>AT5G65320.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:26107368-26108640 REVERSE
           LENGTH=296
          Length = 296

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 138/218 (63%), Gaps = 13/218 (5%)

Query: 125 SAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKE 184
           S K   D ENQRM HIAVERNRRKQMN +L++L+S+MP SY Q  DQASII G I+++K+
Sbjct: 90  SEKTIVDKENQRMNHIAVERNRRKQMNHFLSILKSMMPLSYSQPNDQASIIEGTISYLKK 149

Query: 185 LEQLLQCMKGRNIKTKEQQQQWHEDGSSSSPFAEFFMFPQYSTRATSEGSTSYPNTCCEA 244
           LEQ LQ ++ +   TK  Q        S + F++FFMFPQYST   +  +T        +
Sbjct: 150 LEQRLQSLEAQLKATKLNQ--------SPNIFSDFFMFPQYSTATATATAT----ASSSS 197

Query: 245 TVAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTTVE 304
           +   +  R    AD+EVT+V+ HANIK+L+K QP  L K++    SLG   LHLN+TT +
Sbjct: 198 SSHHHHKRLEVVADVEVTMVERHANIKVLTKTQPRLLFKIINEFNSLGLSTLHLNLTTSK 257

Query: 305 DMVLASVSVKVEEGCELN-TVDEIAAAMNQLSSTVQEE 341
           DM L + SVKVE  C+L  + +E+A  ++++   V +E
Sbjct: 258 DMSLFTFSVKVEADCQLTPSGNEVANTVHEVVRRVHKE 295


>AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:8715525-8717772
           REVERSE LENGTH=414
          Length = 414

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/233 (42%), Positives = 140/233 (60%), Gaps = 24/233 (10%)

Query: 117 RRKRRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIG 176
           + KR+  +++K  E++E+QRMTHIAVERNRRKQMNE+L VLRSLMP SYVQRGDQASIIG
Sbjct: 177 KSKRKRARTSKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIG 236

Query: 177 GAINFVKELEQLLQCMK-----------GRNIKTKEQQQQWHEDGSSSSPFAEFFMFPQY 225
           GAI FV+ELEQLLQC++           GR++ T            ++   A+  +    
Sbjct: 237 GAIEFVRELEQLLQCLESQKRRRILGETGRDMTTTTTSSSSPITTVANQ--AQPLIITGN 294

Query: 226 STRATSEGSTSYPNTCCEATVAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLVKMV 285
            T     G             A+N++     AD+EV L+   A IKILS+++PGQL+K +
Sbjct: 295 VTELEGGGG-------LREETAENKS---CLADVEVKLLGFDAMIKILSRRRPGQLIKTI 344

Query: 286 LGMQSLGFIILHLNVTTVEDMVLASVSVKVEEGCELNTVDEIAAAMNQLSSTV 338
             ++ L   ILH N+TT+E  VL S +VK+       T ++IA+++ Q+ S +
Sbjct: 345 AALEDLHLSILHTNITTMEQTVLYSFNVKITSETRF-TAEDIASSIQQIFSFI 396


>AT5G46690.1 | Symbols: bHLH071 | beta HLH protein 71 |
           chr5:18945639-18947434 FORWARD LENGTH=327
          Length = 327

 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/246 (42%), Positives = 150/246 (60%), Gaps = 44/246 (17%)

Query: 127 KNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELE 186
           KN+E+ ENQRMTHIAVERNRR+QMN++L+VLRSLMP  +  +GDQASI+GGAI+F+KELE
Sbjct: 78  KNEEEAENQRMTHIAVERNRRRQMNQHLSVLRSLMPQPFAHKGDQASIVGGAIDFIKELE 137

Query: 187 QL---LQCMKGRNIKTKE------------QQQQWHEDGSSSSPFAEFFMFPQYSTRATS 231
                L+  K  N K  +            +Q+  H+  S S   ++FF+     ++   
Sbjct: 138 HKLLSLEAQKHHNAKLNQSVTSSTSQDSNGEQENPHQPSSLS--LSQFFLHSYDPSQENR 195

Query: 232 EGSTSYPNTCCEATVAQNQNRPPAAADIEVTLVDGHANIKILSKK-----------QPGQ 280
            GSTS   T  E              D+EVTL++ HANI+ILS++           +P Q
Sbjct: 196 NGSTSSVKTPME--------------DLEVTLIETHANIRILSRRRGFRWSTLATTKPPQ 241

Query: 281 LVKMVLGMQSLGFIILHLNVTTVEDMVLASVSVKVEEGCELNTVDEIAAAMNQLSSTVQE 340
           L K+V  +QSL   ILHL+VTT+++  + S+S KVEE C+L++VD+IA A++ + S ++E
Sbjct: 242 LSKLVASLQSLSLSILHLSVTTLDNYAIYSISAKVEESCQLSSVDDIAGAVHHMLSIIEE 301

Query: 341 EAASFC 346
           E   FC
Sbjct: 302 EP--FC 305


>AT4G01460.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:621334-622697 FORWARD
           LENGTH=315
          Length = 315

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 150/244 (61%), Gaps = 25/244 (10%)

Query: 105 PPSITTAATVTGRRKRRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPS 164
           P +   A TV  +RKR+ T++ KN++++ENQRMTHIAVERNRR+QMNE+L  LRSLMPPS
Sbjct: 83  PRTENGAVTVKEKRKRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPS 142

Query: 165 YVQRGDQASIIGGAINFVKELEQLLQCMKGRNIKTKEQQQQWHEDGSSSSPFAEFFMFPQ 224
           ++QRGDQASI+GGAI+F+KELEQLLQ ++    K          DG+  +P         
Sbjct: 143 FLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRK----------DGTDETP--------- 183

Query: 225 YSTRATSEGSTSYPNTCCEATVAQNQNRPPA------AADIEVTLVDGHANIKILSKKQP 278
            +   +S  S +  N+   +    ++N   A        ++E T++  H ++K+  K+  
Sbjct: 184 KTASCSSSSSLACTNSSISSVSTTSENGFTARFGGGDTTEVEATVIQNHVSLKVRCKRGK 243

Query: 279 GQLVKMVLGMQSLGFIILHLNVTTVEDMVLASVSVKVEEGCELNTVDEIAAAMNQLSSTV 338
            Q++K ++ ++ L   ILHL +++  D V+ S ++K+E+GC+L + DEIA A++Q+   +
Sbjct: 244 RQILKAIVSIEELKLAILHLTISSSFDFVIYSFNLKMEDGCKLGSADEIATAVHQIFEQI 303

Query: 339 QEEA 342
             E 
Sbjct: 304 NGEV 307


>AT2G46810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:19239694-19242373 FORWARD
           LENGTH=371
          Length = 371

 Score =  150 bits (380), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 83/210 (39%), Positives = 127/210 (60%), Gaps = 28/210 (13%)

Query: 128 NQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQ 187
           N E+IE+QRMTHIAVERNRR+QMN +L  LRS++P SY+QRGDQASI+GGAI+FVK LEQ
Sbjct: 184 NIEEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVGGAIDFVKILEQ 243

Query: 188 LLQCMKG--RNIKTKEQQQQWHEDGSSSSPFAEFFMFPQYSTRATSEGSTSYPNTCCEAT 245
            LQ ++   R+ ++ + ++Q  ED                          S  N      
Sbjct: 244 QLQSLEAQKRSQQSDDNKEQIPEDN-------------------------SLRNISSNKL 278

Query: 246 VAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTTVED 305
            A N+    +   IE T+++ H N+KI   ++ GQL++ ++ ++ L F +LHLN+T+  +
Sbjct: 279 RASNKEEQSSKLKIEATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITSPTN 338

Query: 306 MVLA-SVSVKVEEGCELNTVDEIAAAMNQL 334
             ++ S ++K+E+ C L + DEI AA+ Q+
Sbjct: 339 TSVSYSFNLKMEDECNLGSADEITAAIRQI 368


>AT3G61950.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:22940231-22941332 FORWARD
           LENGTH=307
          Length = 307

 Score =  150 bits (379), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/210 (40%), Positives = 129/210 (61%), Gaps = 25/210 (11%)

Query: 126 AKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKEL 185
           +KN E+IENQR+ HIAVERNRR+QMNE++  LR+L+PPSY+QRGDQASI+GGAIN+VK L
Sbjct: 116 SKNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVL 175

Query: 186 EQLLQCMKGRNIKTKEQQQQWHEDGSSSSPFAEFFMFPQYSTRATSEGSTSYPNTCCEAT 245
           EQ++Q ++ +    K  QQQ      S+S   E  +       +    +T    TC    
Sbjct: 176 EQIIQSLESQ----KRTQQQ------SNSEVVENALNHLSGISSNDLWTTLEDQTCI--- 222

Query: 246 VAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTT-VE 304
                        IE T++  H ++K+  +K+ GQL+K ++ ++ L   +LHLN+TT   
Sbjct: 223 -----------PKIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSH 271

Query: 305 DMVLASVSVKVEEGCELNTVDEIAAAMNQL 334
             V  S ++K+E+ C+L + DEI AA++++
Sbjct: 272 SSVSYSFNLKMEDECDLESADEITAAVHRI 301


>AT3G61950.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:22939661-22941332 FORWARD
           LENGTH=358
          Length = 358

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/210 (40%), Positives = 129/210 (61%), Gaps = 25/210 (11%)

Query: 126 AKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKEL 185
           +KN E+IENQR+ HIAVERNRR+QMNE++  LR+L+PPSY+QRGDQASI+GGAIN+VK L
Sbjct: 167 SKNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVL 226

Query: 186 EQLLQCMKGRNIKTKEQQQQWHEDGSSSSPFAEFFMFPQYSTRATSEGSTSYPNTCCEAT 245
           EQ++Q ++ +    K  QQQ      S+S   E  +       +    +T    TC    
Sbjct: 227 EQIIQSLESQ----KRTQQQ------SNSEVVENALNHLSGISSNDLWTTLEDQTCI--- 273

Query: 246 VAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTT-VE 304
                        IE T++  H ++K+  +K+ GQL+K ++ ++ L   +LHLN+TT   
Sbjct: 274 -----------PKIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSH 322

Query: 305 DMVLASVSVKVEEGCELNTVDEIAAAMNQL 334
             V  S ++K+E+ C+L + DEI AA++++
Sbjct: 323 SSVSYSFNLKMEDECDLESADEITAAVHRI 352


>AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:1846531-1848016
           FORWARD LENGTH=202
          Length = 202

 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 108/186 (58%), Gaps = 6/186 (3%)

Query: 137 MTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGRN 196
           M+HIAVERNRR+QMNE+L  LRSL P  Y++RGDQASIIGG I F+KEL+QL+Q ++ + 
Sbjct: 1   MSHIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKK 60

Query: 197 IKTKEQQQQWHEDGSSSSPFAEFFMFPQYSTRATSEGSTSYPNTCCEATVAQNQNRPPAA 256
            +    +  +  D  +  P +        +TR       +   T     V    N P   
Sbjct: 61  RRKTLNRPSFPYDHQTIEPSS----LGAATTRVPFSRIENVMTTSTFKEVGACCNSP--H 114

Query: 257 ADIEVTLVDGHANIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTTVEDMVLASVSVKVE 316
           A++E  +   +  ++++S++  GQLVK++  ++ L F +LHLN++++E+ VL    VK+ 
Sbjct: 115 ANVEAKISGSNVVLRVVSRRIVGQLVKIISVLEKLSFQVLHLNISSMEETVLYFFVVKIG 174

Query: 317 EGCELN 322
             C L+
Sbjct: 175 LECHLS 180


>AT5G53210.1 | Symbols: SPCH | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr5:21586606-21588941
           REVERSE LENGTH=364
          Length = 364

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 52/61 (85%)

Query: 135 QRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKG 194
           Q+M+H+ VERNRRKQMNE+L VLRSLMP  YV+RGDQASIIGG + ++ EL+Q+LQ ++ 
Sbjct: 100 QKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEA 159

Query: 195 R 195
           +
Sbjct: 160 K 160



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 251 NRPPAAADIEVTLVDGHANIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTTVEDMVLAS 310
           N   A AD+EV     +  +K +S K PGQ++K++  ++ L   IL +N+ TV++ +L S
Sbjct: 280 NSKSALADVEVKFSGANVLLKTVSHKIPGQVMKIIAALEDLALEILQVNINTVDETMLNS 339

Query: 311 VSVKVEEGCELNTVDEIAAAMNQ 333
            ++K+   C+L + +E+A  + Q
Sbjct: 340 FTIKIGIECQL-SAEELAQQIQQ 361


>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
           Basic helix-loop-helix (bHLH) DNA-binding family protein
           | chr1:11799042-11800913 REVERSE LENGTH=623
          Length = 623

 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 106/229 (46%), Gaps = 31/229 (13%)

Query: 103 NLPPSITTAATVTGRRKRRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMP 162
           +L  S+     V  R K+R  K A  +E    + + H+  ER RR+++N+    LR+++P
Sbjct: 421 DLEASVVKEVAVEKRPKKRGRKPANGRE----EPLNHVEAERQRREKLNQRFYALRAVVP 476

Query: 163 PSYVQRGDQASIIGGAINFVKELEQLLQCMKGRNIKTKEQQQQWHEDGSSSSPFAEFFMF 222
              V + D+AS++G AI ++ EL+  +   +   ++ K Q ++               + 
Sbjct: 477 --NVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIKNQLEE---------------VK 519

Query: 223 PQYSTRATSEGSTSYPNTCCEATVAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLV 282
            + + R  S       ++C            P   +IEV ++   A I++ S K+     
Sbjct: 520 LELAGRKASASGGDMSSSCSSIK--------PVGMEIEVKIIGWDAMIRVESSKRNHPAA 571

Query: 283 KMVLGMQSLGFIILHLNVTTVEDMVLASVSVKVEEGCELNTVDEIAAAM 331
           +++  +  L   + H +++ V D+++   +VK+  G  + T +++ A++
Sbjct: 572 RLMSALMDLELEVNHASMSVVNDLMIQQATVKM--GFRIYTQEQLRASL 618


>AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr2:7331721-7334077
           FORWARD LENGTH=571
          Length = 571

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 30/191 (15%)

Query: 139 HIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGRNIK 198
           ++  ER RRK++N+ L  LRSL+P   + + D+ASI+G AIN+VKEL+      + + ++
Sbjct: 315 NLMAERRRRKKLNDRLYALRSLVP--RITKLDRASILGDAINYVKELQN-----EAKELQ 367

Query: 199 TKEQQQQWHEDGSSSSPFAEFFMFPQYSTRATSEGSTSY-PNTCCEATV--------AQN 249
            + ++    EDGS+          PQ          T + P   C + V         +N
Sbjct: 368 DELEENSETEDGSNR---------PQGGMSLNGTVVTGFHPGLSCNSNVPSVKQDVDLEN 418

Query: 250 QNRPPAAAD--IEVTLVDGHA-NIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTTVEDM 306
            N      +  ++V  +DG    +K++ + +PG   +++  + SLG  + + N T    +
Sbjct: 419 SNDKGQEMEPQVDVAQLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTTRY--L 476

Query: 307 VLASVSVKVEE 317
            L S   KVE+
Sbjct: 477 SLVSNVFKVEK 487


>AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:4384758-4386392
           FORWARD LENGTH=450
          Length = 450

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 24/159 (15%)

Query: 139 HIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGRNIK 198
           ++  ER RRK++N+ L +LRS++P   + + D+ASI+G AI+++KEL Q          +
Sbjct: 268 NLMAERRRRKKLNDRLYMLRSVVP--KISKMDRASILGDAIDYLKELLQ----------R 315

Query: 199 TKEQQQQWHEDGSSSSPFAEFFMFPQ-YSTRATSEGSTSYPNTCCEATVAQNQNRPPAAA 257
             +   +      SSS        PQ  S R   E        C  +++   + + P   
Sbjct: 316 INDLHTELESTPPSSSSLHPLTPTPQTLSYRVKEE-------LCPSSSLPSPKGQQPR-- 366

Query: 258 DIEVTLVDGHA-NIKILSKKQPGQLVKMVLGMQSLGFII 295
            +EV L +G A NI +   ++PG L+  +  + +LG  +
Sbjct: 367 -VEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDV 404


>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
           transcription factor | chr2:19091187-19092887 REVERSE
           LENGTH=566
          Length = 566

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 11/104 (10%)

Query: 101 TDNLPPSITTAATVTG-----RRKRRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLA 155
           T+  P S+   A +       R ++R  K A  +E    + + H+  ER RR+++N+   
Sbjct: 357 TEKRPVSLLAGAGIVSVVDEKRPRKRGRKPANGRE----EPLNHVEAERQRREKLNQRFY 412

Query: 156 VLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGRNIKT 199
            LRS++P   + + D+AS++G AI+++KEL++ ++ M+   + T
Sbjct: 413 ALRSVVP--NISKMDKASLLGDAISYIKELQEKVKIMEDERVGT 454


>AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr3:9832953-9834790 REVERSE LENGTH=494
          Length = 494

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 28/199 (14%)

Query: 139 HIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGRNIK 198
           ++  ER RRK++N+ L +LRS++P   + + D+ASI+G AI+++KEL Q         I 
Sbjct: 308 NLMAERRRRKKLNDRLYMLRSVVP--KISKMDRASILGDAIDYLKELLQ--------RIN 357

Query: 199 TKEQQQQWHEDGS---SSSPFAEFFMFPQ-YSTRATSEGSTSYPNTCCEATVAQNQNRPP 254
               + +    GS   +SS F      PQ  S R   E         C +++   + +  
Sbjct: 358 DLHNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEE--------LCPSSLPSPKGQ-- 407

Query: 255 AAADIEVTLVDGHA-NIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTTVEDMVLASVSV 313
             A +EV L +G A NI +   ++PG L+  +  + +LG  +    ++      L     
Sbjct: 408 -QARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRA 466

Query: 314 -KVEEGCELNTVDEIAAAM 331
            + +EG E+   D+I A +
Sbjct: 467 EQCQEGQEI-LPDQIKAVL 484


>AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr3:9832953-9834790 REVERSE LENGTH=494
          Length = 494

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 28/199 (14%)

Query: 139 HIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGRNIK 198
           ++  ER RRK++N+ L +LRS++P   + + D+ASI+G AI+++KEL Q         I 
Sbjct: 308 NLMAERRRRKKLNDRLYMLRSVVP--KISKMDRASILGDAIDYLKELLQ--------RIN 357

Query: 199 TKEQQQQWHEDGS---SSSPFAEFFMFPQ-YSTRATSEGSTSYPNTCCEATVAQNQNRPP 254
               + +    GS   +SS F      PQ  S R   E         C +++   + +  
Sbjct: 358 DLHNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEE--------LCPSSLPSPKGQ-- 407

Query: 255 AAADIEVTLVDGHA-NIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTTVEDMVLASVSV 313
             A +EV L +G A NI +   ++PG L+  +  + +LG  +    ++      L     
Sbjct: 408 -QARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRA 466

Query: 314 -KVEEGCELNTVDEIAAAM 331
            + +EG E+   D+I A +
Sbjct: 467 EQCQEGQEI-LPDQIKAVL 484


>AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
           (bHLH) DNA-binding superfamily protein |
           chr3:9832953-9834790 REVERSE LENGTH=494
          Length = 494

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 28/199 (14%)

Query: 139 HIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGRNIK 198
           ++  ER RRK++N+ L +LRS++P   + + D+ASI+G AI+++KEL Q         I 
Sbjct: 308 NLMAERRRRKKLNDRLYMLRSVVP--KISKMDRASILGDAIDYLKELLQ--------RIN 357

Query: 199 TKEQQQQWHEDGS---SSSPFAEFFMFPQ-YSTRATSEGSTSYPNTCCEATVAQNQNRPP 254
               + +    GS   +SS F      PQ  S R   E         C +++   + +  
Sbjct: 358 DLHNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEE--------LCPSSLPSPKGQ-- 407

Query: 255 AAADIEVTLVDGHA-NIKILSKKQPGQLVKMVLGMQSLGFIILHLNVTTVEDMVLASVSV 313
             A +EV L +G A NI +   ++PG L+  +  + +LG  +    ++      L     
Sbjct: 408 -QARVEVRLREGRAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRA 466

Query: 314 -KVEEGCELNTVDEIAAAM 331
            + +EG E+   D+I A +
Sbjct: 467 EQCQEGQEI-LPDQIKAVL 484


>AT4G37850.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:17796362-17797647 REVERSE
           LENGTH=328
          Length = 328

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 104/219 (47%), Gaps = 24/219 (10%)

Query: 120 RRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAI 179
           R+ TK A+     ++    HI  ER RR+++ +    L +L+P   +++ D+AS++G A+
Sbjct: 134 RKGTKRAQPFSRNQSNAQDHIIAERKRREKLTQRFVALSALVPG--LKKMDKASVLGDAL 191

Query: 180 NFVKELEQLLQCMKGRNIKTKEQQQQWHEDGSSSSPFAEFFMFPQYSTRATSEGSTSYPN 239
             +K L++       R  + +EQ+++            E  +  + S     + + S+ +
Sbjct: 192 KHIKYLQE-------RVGELEEQKKERR---------LESMVLVKKSKLILDDNNQSFSS 235

Query: 240 TCCEATVAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLVKMVLGMQSLGFIILHLN 299
           +C +     + + P    +IEV   D    IKIL +KQ G L K++  ++ L  +I + +
Sbjct: 236 SCEDG--FSDLDLP----EIEVRFSDEDVLIKILCEKQKGHLAKIMAEIEKLHILITNSS 289

Query: 300 VTTVEDMVLASVSVKVEEGCELNTVDEIAAAMNQLSSTV 338
           V      +  ++  K E   ++  +D + +  + LS+ +
Sbjct: 290 VLNFGPTLDITIIAKKESDFDMTLMDVVKSLRSALSNFI 328


>AT1G49770.1 | Symbols: RGE1, ZOU | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18424578-18426531
           FORWARD LENGTH=308
          Length = 308

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 106 PSITTAATVTGRRKRRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSY 165
           PS     T   + K+R  ++ KN E+       HI  ER RRK+M +  + L +L+ P  
Sbjct: 41  PSPEIQTTTVKKGKKRTKRNDKNHEEESPDHEIHIWTERERRKKMRDMFSKLHALL-PQL 99

Query: 166 VQRGDQASIIGGAINFVKELEQLLQCMKGRNIK 198
             + D+++I+  A++ +K LEQ LQ ++ + ++
Sbjct: 100 PPKADKSTIVDEAVSSIKSLEQTLQKLEMQKLE 132


>AT5G46760.1 | Symbols:  | Basic helix-loop-helix (bHLH) DNA-binding
           family protein | chr5:18974231-18976009 FORWARD
           LENGTH=592
          Length = 592

 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 106/229 (46%), Gaps = 24/229 (10%)

Query: 103 NLPPSITTAATVTGRRKRRCTKSAKNQEDIENQRMTHIAVERNRRKQMNEYLAVLRSLMP 162
           +L  S+   A V    +++  K  +   +   + + H+  ER RR+++N+    LR+++P
Sbjct: 380 DLEASVVKEAIVVEPPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVP 439

Query: 163 PSYVQRGDQASIIGGAINFVKELEQLLQCMKGRNIKTKEQQQQWHEDGSSSSPFAEFFMF 222
              V + D+AS++G AI+++ EL+  LQ       ++ +++ Q   DG S     E    
Sbjct: 440 N--VSKMDKASLLGDAISYINELKSKLQ-----QAESDKEEIQKKLDGMSK----EGNNG 488

Query: 223 PQYSTRATSEGSTSYPNTCCEATVAQNQNRPPAAADIEVTLVDGHANIKILSKKQPGQLV 282
               +RA    S++  +T     +           +I+V ++     I++   K+     
Sbjct: 489 KGCGSRAKERKSSNQDSTASSIEM-----------EIDVKIIGWDVMIRVQCGKKDHPGA 537

Query: 283 KMVLGMQSLGFIILHLNVTTVEDMVLASVSVKVEEGCELNTVDEIAAAM 331
           + +  ++ L   + H +++ V D+++   +VK+  G +    D++  A+
Sbjct: 538 RFMEALKELDLEVNHASLSVVNDLMIQQATVKM--GSQFFNHDQLKVAL 584