Miyakogusa Predicted Gene

Lj0g3v0134389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0134389.1 tr|B9IPV4|B9IPV4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_809560 PE=3
SV=1,60.24,8e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; Homeodomain-like,Homeodomain-like; HOMEOB,CUFF.8221.1
         (276 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 | chr2:1434...   190   7e-49
AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |...   155   3e-38
AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr...    97   1e-20
AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr...    97   1e-20
AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr...    94   1e-19
AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr...    94   1e-19
AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 | chr5:...    72   5e-13
AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3:...    72   6e-13
AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 | chr1:...    71   8e-13
AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox...    70   1e-12
AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related ho...    70   2e-12
AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:...    70   2e-12
AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superf...    70   2e-12
AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:...    68   6e-12
AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like super...    66   2e-11
AT5G46010.1 | Symbols:  | Homeodomain-like superfamily protein |...    65   6e-11
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superf...    64   8e-11
AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 | chr...    57   1e-08

>AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 |
           chr2:14341639-14343597 REVERSE LENGTH=378
          Length = 378

 Score =  190 bits (483), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 91/117 (77%), Positives = 102/117 (87%), Gaps = 2/117 (1%)

Query: 1   MAASNKSWPSMFKSKRNPNHQWHHDINSSLLSTGFQRT-PYASGGGDERTPEPRPRWNPK 59
           MA+SN+ WPSMFKSK +P HQW HDINS LL +   R+ P++SG   ER+PEP+PRWNPK
Sbjct: 1   MASSNRHWPSMFKSKPHP-HQWQHDINSPLLPSASHRSSPFSSGCEVERSPEPKPRWNPK 59

Query: 60  PEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHKLR 116
           PEQI ILEAIFNSGMVNPPR+EIR+IR QLQEYGQVGDANVFYWFQNRKSRSKHKLR
Sbjct: 60  PEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 116


>AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |
           chr5:18648921-18650698 FORWARD LENGTH=325
          Length = 325

 Score =  155 bits (392), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/117 (62%), Positives = 93/117 (79%), Gaps = 2/117 (1%)

Query: 1   MAASNKSWPSMFKSK-RNPNHQWHHDINSSLLSTGFQRTPYASGGGDERTPEPRPRWNPK 59
           M++SNK+WPSMFKSK  N NH   H+I++      +     +S    +R P+P+PRWNPK
Sbjct: 1   MSSSNKNWPSMFKSKPCNNNHHHQHEIDTPSY-MHYSNCNLSSSFSSDRIPDPKPRWNPK 59

Query: 60  PEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHKLR 116
           PEQI ILE+IFNSG +NPPR+EI++IR++LQEYGQ+GDANVFYWFQNRKSR+KHKLR
Sbjct: 60  PEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHKLR 116


>AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
           chr3:889515-892162 REVERSE LENGTH=268
          Length = 268

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 53/70 (75%)

Query: 37  RTPYASGGGDERTPEPRPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVG 96
           R+P +S  G       R RW+PKPEQI ILE+IF+SGMVNPP++E  +IR  L+++G VG
Sbjct: 15  RSPPSSASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVG 74

Query: 97  DANVFYWFQN 106
           DANVFYWFQN
Sbjct: 75  DANVFYWFQN 84


>AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
           chr3:889515-892162 REVERSE LENGTH=297
          Length = 297

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 53/70 (75%)

Query: 37  RTPYASGGGDERTPEPRPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVG 96
           R+P +S  G       R RW+PKPEQI ILE+IF+SGMVNPP++E  +IR  L+++G VG
Sbjct: 15  RSPPSSASGSTSAEPVRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVG 74

Query: 97  DANVFYWFQN 106
           DANVFYWFQN
Sbjct: 75  DANVFYWFQN 84


>AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
           chr5:5880576-5882602 REVERSE LENGTH=268
          Length = 268

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 46/54 (85%)

Query: 53  RPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQN 106
           R RW+PKPEQI ILE+IFNSG VNPP+DE  +IR  L+++G VGDANVFYWFQN
Sbjct: 19  RARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72


>AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
           chr5:5880576-5882602 REVERSE LENGTH=268
          Length = 268

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 46/54 (85%)

Query: 53  RPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQN 106
           R RW+PKPEQI ILE+IFNSG VNPP+DE  +IR  L+++G VGDANVFYWFQN
Sbjct: 19  RARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72


>AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 |
           chr5:1734487-1734855 FORWARD LENGTH=122
          Length = 122

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 55  RWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 114
           RWNP  EQ+ +L  +F +G+  P  D+I+KI M+L  YG++   NVFYWFQN K+R + K
Sbjct: 29  RWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARERQK 88

Query: 115 LR 116
            R
Sbjct: 89  CR 90


>AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 |
           chr3:6161155-6163183 REVERSE LENGTH=350
          Length = 350

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query: 55  RWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 114
           RWNP P+Q+ +LE ++  G   P  D I++I  QL+ YG++   NVFYWFQN K+R + K
Sbjct: 76  RWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQK 135

Query: 115 LR 116
            R
Sbjct: 136 RR 137


>AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 |
           chr1:17236903-17237953 REVERSE LENGTH=251
          Length = 251

 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 39/60 (65%)

Query: 55  RWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 114
           RWNP  EQI ILE ++  GM  P   +I  I +QL +YG++   NVFYWFQN K+R + K
Sbjct: 90  RWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQK 149


>AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox 14
           | chr1:7182558-7183866 FORWARD LENGTH=211
          Length = 211

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query: 53  RPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSK 112
           R RW P   Q+ ILE+I++ G   P R  IR+I  +L E+GQ+ + NV+ WFQNR++RSK
Sbjct: 93  RHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSK 152

Query: 113 HK 114
            K
Sbjct: 153 RK 154


>AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related
           homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268
          Length = 268

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 34  GFQRTPYASGGGDERTPEPRPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYG 93
           G    P  S  G + T   R RW P P Q+ ILE IF+ G   P + +I+ I  +L ++G
Sbjct: 80  GLYADPMMSSLGHKMTA--RQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHG 137

Query: 94  QVGDANVFYWFQNRKSRSKHK 114
           Q+ + NV+ WFQNR++RSK K
Sbjct: 138 QIAEQNVYNWFQNRRARSKRK 158


>AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 |
           chr3:3527606-3528263 FORWARD LENGTH=182
          Length = 182

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 55  RWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 114
           RWNP  EQ+ IL  +F +G+  P  D+I+KI  +L  YG++   NVFYWFQN K+R + K
Sbjct: 24  RWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQK 83

Query: 115 LR 116
            R
Sbjct: 84  RR 85


>AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like
           superfamily protein | chr2:12262115-12263286 FORWARD
           LENGTH=244
          Length = 244

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%)

Query: 49  TPEPRPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRK 108
           +P    RW P PEQ+ ILE ++ SG+  P   +I++I   L  YG++   NVFYWFQN K
Sbjct: 2   SPVASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHK 61

Query: 109 SRSKHKLR 116
           +R + KLR
Sbjct: 62  ARDRQKLR 69


>AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 |
           chr5:23933408-23934627 REVERSE LENGTH=260
          Length = 260

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 55  RWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 114
           RWNP  +QI +LE ++  G+  P  D+I++I  +L+ YG +   NVFYWFQN K+R + K
Sbjct: 14  RWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQK 73


>AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like
           superfamily protein | chr2:224470-225997 REVERSE
           LENGTH=271
          Length = 271

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 55  RWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKS 109
           RWNP PEQI  LE ++ SG   P  ++I++I  +L++YG++   NVFYWFQN K+
Sbjct: 61  RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKA 115


>AT5G46010.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:18660584-18661183 FORWARD LENGTH=122
          Length = 122

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 51  EPRPRWNPKPEQICILEAIFNSGMVNPPRDEIRKIRMQLQEYG-QVGDANVFYWFQNRKS 109
           +P+P W P   Q  ILE +F  G VNP    I++I ++LQ YG +V DA+V+ WF NRK 
Sbjct: 50  DPKPEWKPNQHQAQILEELFIGGTVNPSLTSIKQITIKLQSYGEEVDDADVYKWFHNRKY 109

Query: 110 RSKHKL 115
             K KL
Sbjct: 110 SRKPKL 115


>AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like
           superfamily protein | chr2:7809100-7810671 REVERSE
           LENGTH=292
          Length = 292

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 55  RWNPKPEQICIL-EAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKH 113
           RW P  EQI IL E  +N+ + +P  D+I+KI  +L+++G++   NVFYWFQN K+R + 
Sbjct: 38  RWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQ 97

Query: 114 KLR 116
           K R
Sbjct: 98  KKR 100


>AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 |
           chr1:7184485-7185267 FORWARD LENGTH=197
          Length = 197

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 62  QICILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 114
           Q+ ILE I+  G   P    I++I M+L E+GQ+ + NV++WFQNR++RSK K
Sbjct: 86  QLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRK 138