Miyakogusa Predicted Gene

Lj0g3v0133569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0133569.1 Non Chatacterized Hit- tr|F4IH20|F4IH20_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At2,44.55,2e-18,seg,NULL,CUFF.8179.1
         (182 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40316.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   193   5e-50
AT2G40316.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    99   2e-21

>AT2G40316.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Autophagy-related protein 27
           (InterPro:IPR018939); Has 138 Blast hits to 138 proteins
           in 57 species: Archae - 0; Bacteria - 0; Metazoa - 32;
           Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes -
           11 (source: NCBI BLink). | chr2:16836355-16838688
           FORWARD LENGTH=276
          Length = 276

 Score =  193 bits (490), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 112/153 (73%)

Query: 29  CEFSFLDGNKLYNYTLSSPIRNFPHGVLSEDGFYKVAVNQTTLWFQLCDGMVFNHDPPTC 88
           CEFSF   NK++++ L+S IRN+PHGVLSEDGFYKV  N + LWFQLCD ++FNHDPP C
Sbjct: 26  CEFSFTGRNKVFHFNLASSIRNYPHGVLSEDGFYKVEANSSVLWFQLCDVLIFNHDPPRC 85

Query: 89  ADCWDCGGPTRCGMECNALLANNIGGYHVCTAIGLGSKIDVEVIDKKNPHIGVIVKMSSS 148
             C DCGGP+ CG  C+AL++ N+ GY VCT++G  S   V++IDK++P  GVIV+MS+ 
Sbjct: 86  VGCEDCGGPSHCGTSCSALVSENVRGYDVCTSLGHASSTKVDIIDKEDPGKGVIVQMSTG 145

Query: 149 SPKYNCSLAVSVLCNVNRVQAPHTLEKLGACNY 181
           +   NCSL+VSV+C   +V  P TL K G C Y
Sbjct: 146 NRNQNCSLSVSVICQKTKVDGPLTLAKSGTCQY 178


>AT2G40316.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s:
           Autophagy-related protein 27 (InterPro:IPR018939); Has
           135 Blast hits to 135 proteins in 58 species: Archae -
           0; Bacteria - 0; Metazoa - 32; Fungi - 63; Plants - 31;
           Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
           | chr2:16836768-16838688 FORWARD LENGTH=195
          Length = 195

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 64/112 (57%), Gaps = 19/112 (16%)

Query: 71  LWFQLCDGMVFNHDPPTCADCWDCGGPTRCGMECNALLANNIGGYHVCTAIGLGSKIDVE 130
           L  QLCD ++FNHDPP C  C DCGGP+ CG  C+AL++ N                   
Sbjct: 6   LLHQLCDVLIFNHDPPRCVGCEDCGGPSHCGTSCSALVSEN------------------- 46

Query: 131 VIDKKNPHIGVIVKMSSSSPKYNCSLAVSVLCNVNRVQAPHTLEKLGACNYV 182
           V DK++P  GVIV+MS+ +   NCSL+VSV+C   +V  P TL K G C Y 
Sbjct: 47  VRDKEDPGKGVIVQMSTGNRNQNCSLSVSVICQKTKVDGPLTLAKSGTCQYA 98