Miyakogusa Predicted Gene
- Lj0g3v0133469.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0133469.1 Non Chatacterized Hit- tr|K4DFD2|K4DFD2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,53.09,0.00000000000001,coiled-coil,NULL; seg,NULL,CUFF.8152.1
(318 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G53460.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 172 2e-43
AT1G70650.2 | Symbols: | Ran BP2/NZF zinc finger-like superfami... 71 9e-13
AT1G70650.1 | Symbols: | Ran BP2/NZF zinc finger-like superfami... 70 1e-12
AT1G55040.1 | Symbols: | zinc finger (Ran-binding) family prote... 62 4e-10
AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family prote... 57 2e-08
>AT1G53460.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Ran BP2/NZF zinc finger-like superfamily protein
(TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins
in 88 species: Archae - 11; Bacteria - 27; Metazoa -
119; Fungi - 17; Plants - 101; Viruses - 2; Other
Eukaryotes - 208 (source: NCBI BLink). |
chr1:19954558-19956509 REVERSE LENGTH=314
Length = 314
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 152/281 (54%), Gaps = 10/281 (3%)
Query: 43 TEQNQKPPLSTFFLEAVGLSEKTATNXXXXXXXXXXXXXXXPXXXXXXXXXXXX---VRS 99
+E+ K PLS FF EAVGL K+ T+ VR
Sbjct: 34 SEEAYKKPLSVFFEEAVGLRPKSETSEIEEEEEEGNELKRKLLELERKLIELKKSEPVRK 93
Query: 100 FKEKTKNM--PKKPERRSLYSAFTNKLSPVSISSPPRGKDENARREQQVKALSPDTLALV 157
K+K + + + +R +LY F + + K++ R K L + ++ V
Sbjct: 94 KKQKGEVVISEQNEKRHNLYKLFKGD-EEKEVKKHSKEKEDVIR---VYKELPIEMVSFV 149
Query: 158 EYFYEKGYFKEANFAKGKERFDPAWFEKLHALCFIKCASKNFARDNQEIAKWLSGSALKQ 217
+++GY +ANF G E+ D ++ +A F+K A++ F +D QEIAKWLSGS LK+
Sbjct: 150 RLLHKEGYLNKANFITG-EKLDMGNLDEEYARTFVKFAAERFGKDYQEIAKWLSGSDLKK 208
Query: 218 VAMFGCPSSDRGDVFPAKRLRKFFEVPENTVCSKCTLQQSCMFANQTVWKCDTNTLDLGI 277
+ +FGCPS ++ VF AK LR FF++ EN VC KC L++ C F NQ+VW T L L +
Sbjct: 209 IVLFGCPSLEKRAVFAAKTLRNFFDIHENNVCEKCVLKEKCKFPNQSVWDGKTKHLHLSV 268
Query: 278 VMKVITSYALESVHPQLVVPDEVKKSVNQLLKEVVKLSQTT 318
VMKVIT Y L+ HP+L VP EV+ SV++LL E+ LS+T
Sbjct: 269 VMKVITLYPLDLTHPKLQVPQEVQDSVSRLLTEIQNLSRTI 309
>AT1G70650.2 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr1:26638158-26641949 FORWARD LENGTH=595
Length = 595
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 151 PDTLALVEYFYEKGYFKEANFAKGKERFDPAWFEKLHALCFIKCASKNFARDNQEIAKWL 210
P+ L L+ +KGYF+E+ + E H I+ A NFAR + + L
Sbjct: 47 PEWLDLMGMLAKKGYFEESLIPLMSSK------ESNH----IRTACLNFARHRFTLVRNL 96
Query: 211 SGSALKQVAMFGCPSSDRGDVFPAKRLRKFFEVPENTVCSKCTLQQSCMFA-NQTVWKCD 269
S +K +A GCPS+DR V KRLR + + E VC C L+ C A Q
Sbjct: 97 SKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAYAQARDDEG 156
Query: 270 TNTLDLGIVMKVITSYALESVHPQL----VVPDEVKKSVNQLLKEVVKLSQT 317
T+D VM+++ +Y L+S+ P + V+ SV +LL+E V S T
Sbjct: 157 ARTID---VMRLLLTYGLDSISPTVENRACQTKLVEDSVRKLLRESVAYSLT 205
>AT1G70650.1 | Symbols: | Ran BP2/NZF zinc finger-like superfamily
protein | chr1:26638158-26640126 FORWARD LENGTH=466
Length = 466
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 151 PDTLALVEYFYEKGYFKEANFAKGKERFDPAWFEKLHALCFIKCASKNFARDNQEIAKWL 210
P+ L L+ +KGYF+E+ + E H I+ A NFAR + + L
Sbjct: 47 PEWLDLMGMLAKKGYFEESLIPLMSSK------ESNH----IRTACLNFARHRFTLVRNL 96
Query: 211 SGSALKQVAMFGCPSSDRGDVFPAKRLRKFFEVPENTVCSKCTLQQSCMFA-NQTVWKCD 269
S +K +A GCPS+DR V KRLR + + E VC C L+ C A Q
Sbjct: 97 SKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAYAQARDDEG 156
Query: 270 TNTLDLGIVMKVITSYALESVHPQL----VVPDEVKKSVNQLLKEVVKLSQT 317
T+D VM+++ +Y L+S+ P + V+ SV +LL+E V S T
Sbjct: 157 ARTID---VMRLLLTYGLDSISPTVENRACQTKLVEDSVRKLLRESVAYSLT 205
>AT1G55040.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr1:20534895-20538901 FORWARD LENGTH=849
Length = 849
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 12/141 (8%)
Query: 181 AWFEKLHALCFIKCASKNFARDNQEIAKWLSGSALKQVAMFGCPSSDRGDVFPAKRLRKF 240
A F+ A ++ A NF +D +I + LS + ++ + GCP++DR VF K LRK
Sbjct: 198 ALFQDFRA---VQNACSNFGKDRFDILRSLSRNDIQILVGHGCPATDRKVVFSGKLLRKR 254
Query: 241 FEVPENTVCSKCTLQQSCMFANQTVWKCD-TNTLDLGIVMKVITSYALESVHPQLV---- 295
+ E VCS C+L+ SC A K D T+DL M+++ +Y + ++ +
Sbjct: 255 VHLDEGDVCSSCSLRNSCEKAFLLTNKEDEARTIDL---MRILFTYGFDPLNGTVANKSL 311
Query: 296 -VPDEVKKSVNQLLKEVVKLS 315
VK V +LL E+VKLS
Sbjct: 312 LKKKSVKSVVRKLLHEIVKLS 332
>AT1G48570.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr1:17955455-17957661 REVERSE LENGTH=455
Length = 455
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 19/172 (11%)
Query: 151 PDTLALVEYFYEKGYFKEANFAKGKERFDPAWFEKLHALCFIKCASKNFARDNQEIAKWL 210
P+ + V+ KGYF K+ D ++++ +K A +FARD ++ + L
Sbjct: 63 PEWITFVDRLKTKGYFT-------KDTEDDTVYQEM---ILVKDACLSFARDRYDVLRSL 112
Query: 211 SGSALKQVAMFGCPSSDRGDVFPAKRLRKFFEVPENTVCSKCTLQQSCMFANQTV--WKC 268
S ++ + GCP+ R V +KR+R ++ E VC C L+ SC A + +
Sbjct: 113 SSGDVQALVERGCPNLFRKTVNSSKRIRAHVKLNEGDVCGSCDLRSSCDRAYVILKDTEA 172
Query: 269 DTNTLDLGIVMKVITSYALES-VHPQLVVP---DEVKKSVNQLLKEVVKLSQ 316
D T+D VM+++ AL+S V + VP + V +S +LL E+V+ S+
Sbjct: 173 DARTVD---VMRLLLFNALDSIVISRGEVPPGKELVHESARRLLLELVEFSE 221