Miyakogusa Predicted Gene

Lj0g3v0133409.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0133409.1 Non Chatacterized Hit- tr|K4CEQ1|K4CEQ1_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,44.26,0.0005,
,CUFF.8153.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu...    50   2e-07

>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
           and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
          Length = 1299

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 50  TSSQLASIWTSQILEKFIASSDEVYTF-NDLTKGELYSVQLFCQKMGFIYKVSRGGTKPR 108
           TS +   IW ++++E F AS +EVYTF ++L+  E   +   C+KMG   K S  G + R
Sbjct: 16  TSVEATRIWATKVIEDFRASGNEVYTFEHNLSNNERGVIHQMCRKMGIQSKSSGRGEQRR 75

Query: 109 ISIHKTKKE 117
           +SI K++ +
Sbjct: 76  LSIFKSRHK 84