Miyakogusa Predicted Gene

Lj0g3v0132789.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132789.1 Non Chatacterized Hit- tr|A5C5Z8|A5C5Z8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,62.26,0.000000000005,WD40 repeats,WD40 repeat;
WD_REPEATS_REGION,WD40-repeat-containing domain; no
description,WD40/YVTN ,CUFF.8100.1
         (204 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12920.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   168   3e-42
AT5G12920.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...   167   3e-42
AT5G12920.3 | Symbols:  | Transducin/WD40 repeat-like superfamil...   162   2e-40

>AT5G12920.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:4077917-4082585 REVERSE LENGTH=537
          Length = 537

 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 116/183 (63%), Gaps = 14/183 (7%)

Query: 7   PLNLQLDAVKWNLHNQDEVVCASIKHQGLLIFDVASYSSEPTEVLKTRHRPTVDGYSILK 66
           P   + D  +WN  NQ+EV C S KH  +LIFD++  S +PTEVL+TR + ++ G  I +
Sbjct: 187 PPGREFDVARWNPSNQNEVACTSRKHDQVLIFDISYMSPKPTEVLQTRQKLSIIGRKISR 246

Query: 67  GFSDVAFAPN-DSRIFASDTRGTINVWDKRGKILPCLEFTSASHDILNSIQLSADNQIIF 125
           G SDVA   + DSRIF+ DT G ++VWD+R  + PC+E ++  +D + SIQ+  DNQ IF
Sbjct: 247 GLSDVAITSDEDSRIFSPDTLGMVHVWDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIF 306

Query: 126 GAGNKGLLHVWDIRGGRVSTNFQSHKELCYP-------------PLTSVKLATLLEKIGS 172
           GAG +G++H+WD+RGGR S+ FQS K++                PL S+ LA  L+KI S
Sbjct: 307 GAGKEGIIHIWDLRGGRNSSAFQSRKDVSLTRGELELAMAMSQLPLASLHLAPKLQKIAS 366

Query: 173 LKV 175
           LK 
Sbjct: 367 LKA 369


>AT5G12920.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:4077917-4082585 REVERSE LENGTH=572
          Length = 572

 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/183 (44%), Positives = 116/183 (63%), Gaps = 14/183 (7%)

Query: 7   PLNLQLDAVKWNLHNQDEVVCASIKHQGLLIFDVASYSSEPTEVLKTRHRPTVDGYSILK 66
           P   + D  +WN  NQ+EV C S KH  +LIFD++  S +PTEVL+TR + ++ G  I +
Sbjct: 222 PPGREFDVARWNPSNQNEVACTSRKHDQVLIFDISYMSPKPTEVLQTRQKLSIIGRKISR 281

Query: 67  GFSDVAFAPN-DSRIFASDTRGTINVWDKRGKILPCLEFTSASHDILNSIQLSADNQIIF 125
           G SDVA   + DSRIF+ DT G ++VWD+R  + PC+E ++  +D + SIQ+  DNQ IF
Sbjct: 282 GLSDVAITSDEDSRIFSPDTLGMVHVWDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIF 341

Query: 126 GAGNKGLLHVWDIRGGRVSTNFQSHKELCYP-------------PLTSVKLATLLEKIGS 172
           GAG +G++H+WD+RGGR S+ FQS K++                PL S+ LA  L+KI S
Sbjct: 342 GAGKEGIIHIWDLRGGRNSSAFQSRKDVSLTRGELELAMAMSQLPLASLHLAPKLQKIAS 401

Query: 173 LKV 175
           LK 
Sbjct: 402 LKA 404


>AT5G12920.3 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:4077917-4082585 REVERSE LENGTH=554
          Length = 554

 Score =  162 bits (409), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 28/197 (14%)

Query: 7   PLNLQLDAVKWNLHNQDEVVCASIKHQGLLIFDVASYSSEPTE----------------- 49
           P   + D  +WN  NQ+EV C S KH  +LIFD++  S +PTE                 
Sbjct: 190 PPGREFDVARWNPSNQNEVACTSRKHDQVLIFDISYMSPKPTEKQETQMYRRISILGNCK 249

Query: 50  ----------VLKTRHRPTVDGYSILKGFSDVAFAPN-DSRIFASDTRGTINVWDKRGKI 98
                     VL+TR + ++ G  I +G SDVA   + DSRIF+ DT G ++VWD+R  +
Sbjct: 250 IPVPTWFPKSVLQTRQKLSIIGRKISRGLSDVAITSDEDSRIFSPDTLGMVHVWDRRAGV 309

Query: 99  LPCLEFTSASHDILNSIQLSADNQIIFGAGNKGLLHVWDIRGGRVSTNFQSHKELCYPPL 158
            PC+E ++  +D + SIQ+  DNQ IFGAG +G++H+WD+RGGR S+ FQS K++   PL
Sbjct: 310 SPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGGRNSSAFQSRKDMSQLPL 369

Query: 159 TSVKLATLLEKIGSLKV 175
            S+ LA  L+KI SLK 
Sbjct: 370 ASLHLAPKLQKIASLKA 386