Miyakogusa Predicted Gene

Lj0g3v0132739.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132739.1 tr|A9SCD4|A9SCD4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_164112,24.04,8e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; coiled-coil,NULL,CUFF.8094.1
         (540 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12900.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   434   e-122
AT1G12330.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   204   2e-52
AT3G14870.2 | Symbols:  | Plant protein of unknown function (DUF...    52   7e-07
AT3G14870.1 | Symbols:  | Plant protein of unknown function (DUF...    52   8e-07
AT3G14870.3 | Symbols:  | Plant protein of unknown function (DUF...    52   8e-07
AT3G60680.1 | Symbols:  | Plant protein of unknown function (DUF...    52   9e-07

>AT5G12900.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast
           hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:4072151-4074445 REVERSE LENGTH=562
          Length = 562

 Score =  434 bits (1117), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/528 (47%), Positives = 335/528 (63%), Gaps = 48/528 (9%)

Query: 32  EIQTAIAKAVELRALHAALMRGNXXXXX--------XXXXXXXXXXXVSQFSAQDYPVFT 83
           E + AIA  V+LRAL A+LM+                          +   SA DYPVFT
Sbjct: 13  EKEEAIANGVKLRALQASLMQMKSSPSSNYSLRNPSSSSAASPASRPLPNLSAHDYPVFT 72

Query: 84  PSYEDDSILGYSQNLMSQTISESWEESALEGGNSIESIVQDYKQKSSSRKGLTSAFANLV 143
           PSYED+ +  +    +  T+SE+W+E  + G    ++ + D  + S+SRK +        
Sbjct: 73  PSYEDEPVSAFHHKNL--TLSETWDEDGV-GLVDGDTYLSDSYKTSTSRKTVM------- 122

Query: 144 SHSCPADDSKSVTGSCANHITVLQTSPCNDYYKSSRRN-SLEDFKSISSCNNCNPAIITT 202
               P  DS     + ++ +     SP   +Y + R N    DF+S+SSCN+ N      
Sbjct: 123 ---MPHQDSHHHVYTMSDALR----SPPLHFYTTGRSNCGSVDFRSVSSCNDYNKQ---K 172

Query: 203 EFESARNSKSSNTVVLPVTDXXXXXXXXX-KTKG--LISWLLPRLKKKKQKNENFPN--- 256
            F++ ++ KSSN VV P+TD          + +G  ++SWL P+LKKK++ N  F +   
Sbjct: 173 GFDT-KSLKSSNLVV-PLTDSHSAVVSSQPRNRGGRVMSWLFPKLKKKQKSNSIFNSPSI 230

Query: 257 TAESEDVSQALKDFGIMSIDTLKKELNEANENRDLALMEVSEMRSSLGELQQKLEYLESY 316
           T +SE+VS+ LKD G   ++ LK+EL EAN +RD AL +VSEM+SSLGEL +KL+YLESY
Sbjct: 231 TEKSEEVSEVLKDSG-SGVEKLKRELMEANRSRDAALTQVSEMKSSLGELSEKLQYLESY 289

Query: 317 CEDLKKALRQAMEPKDTQLYEQLNNIPKPFDGNGKNSMPVSEEAMVEGFLQIVSESRLSV 376
           C++LKKALR+A     T++  Q N+  +   G   + MPVSEE MVEGFLQIVSE+RLS+
Sbjct: 290 CDNLKKALREA-----TEVVSQENSGGRS-SGKKNSEMPVSEEVMVEGFLQIVSEARLSI 343

Query: 377 KQFCKILINNIEETDHSL----NLLLQPYKLSLNSKNSKAVLYHFEAFINQCFFQDFENC 432
           KQF K L++ I+E D +L    N LLQP+ LS  SK SK + YH EA I+Q  +QDFENC
Sbjct: 344 KQFLKTLVSEIDEEDSTLIGNINTLLQPHNLSFTSKYSKIIQYHLEAIISQSVYQDFENC 403

Query: 433 VFQKNGCAKLLDPRVYRESQFSSFVALRKLSWNEVLRKGTKYYSEGFSKFCDQKMSCVNT 492
           VFQKNG  KLLDP   R++ FSSF +LR LSWNEVL+KGTKYYS+ FS+FCD+KMS + T
Sbjct: 404 VFQKNGKPKLLDPEQDRQANFSSFASLRNLSWNEVLKKGTKYYSDEFSRFCDEKMSLIIT 463

Query: 493 SLNWTRPWPEQLLQAFFVAAKCMWLLHFLAFSFNPPLGVFRVEENATF 540
           +LNWTRPW EQ+LQAFFVAAKC+WLLH LAFSFNP LG+ RVEEN  F
Sbjct: 464 TLNWTRPWSEQMLQAFFVAAKCVWLLHLLAFSFNPALGILRVEENREF 511


>AT1G12330.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast
           hits to 249 proteins in 27 species: Archae - 0; Bacteria
           - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0;
           Other Eukaryotes - 11 (source: NCBI BLink). |
           chr1:4194673-4196627 FORWARD LENGTH=505
          Length = 505

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 172/278 (61%), Gaps = 30/278 (10%)

Query: 273 MSIDTLKKELNEANENRDLALMEVSEMRSSLGELQQKLEYLESYCEDLKKALRQAMEPKD 332
           +++  L  +L +A + ++ A++E S ++SS+ EL++KL  LE YC +LK  L +      
Sbjct: 176 LAVAELSHKLIQATKKKEDAVIEASRLKSSMAELEKKLNKLEIYCHNLKSGLDEC----- 230

Query: 333 TQLYEQLNNIPKPFDGNGKNSMPVSEEA----MVEGFLQIVSESRLSVKQFCKILINNIE 388
                           N K S+P+ ++     +++ FL  VSESR S++   + L + + 
Sbjct: 231 ---------------SNKKQSVPIRKDGFNDRIIQQFLVSVSESRSSIRALSRSLASQLR 275

Query: 389 ETD----HSLNLLLQPYKLSLNS--KNSKAVLYHFEAFINQCFFQDFENCVFQKNGCAKL 442
                    L+LLLQP+ + +NS  KN K+++++ EA +++ FF+DFE   FQKNG  ++
Sbjct: 276 TVGGKVYERLSLLLQPFDVKINSFAKNPKSLIFYLEAILSRAFFEDFEAPGFQKNGSTRI 335

Query: 443 LDPRVYRESQFSSFVALRKLSWNEVLRKGTKYYSEGFSKFCDQKMSCVNTSLNWTRPWPE 502
           L+P    ES ++SF  L +L+W+EVL +GTK++SE FS+FCD+KMS V + L+W R WPE
Sbjct: 336 LNPIDRCESNYASFNVLMELTWDEVLSRGTKHFSEEFSRFCDRKMSDVVSMLSWNRAWPE 395

Query: 503 QLLQAFFVAAKCMWLLHFLAFSFNPPLGVFRVEENATF 540
            LLQAFF A+K +WL+H LA S NP L +FRVE++  F
Sbjct: 396 PLLQAFFGASKSVWLVHLLANSVNPGLQIFRVEKDDRF 433


>AT3G14870.2 | Symbols:  | Plant protein of unknown function
           (DUF641) | chr3:5004171-5005586 FORWARD LENGTH=471
          Length = 471

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 131/316 (41%), Gaps = 45/316 (14%)

Query: 255 PNTAESED--VSQALKDFGIMSIDTLKKELNEANENRDLALMEVSEMRSSLG-------E 305
           PN  +  D  V   LK    +    LKK+L+  N +R L L E+ E+RS L        +
Sbjct: 111 PNGIQKADNLVVAELKTLSELKQSFLKKQLD-PNPDRTLVLAEIQELRSVLKTYEIMGKK 169

Query: 306 LQQKLEYLESYCEDLKKALRQAMEPKDTQLYEQLNN---IPKPFDGNGKNSMPVSEEAMV 362
           L+ +L+  +S    LK+  +++M  ++  + ++LN    +  P D N   S   S     
Sbjct: 170 LECQLKLKDSEIIFLKEKFQESM-TQNKLMEKRLNQSGQLCNPLDHNLHLSAVSSTH--- 225

Query: 363 EGFLQIVSESRLSVKQFCKILINNIEETDHSLNL---LLQPYKLSLNSKNSKAVLYHFEA 419
             F+  +  +  S++ F K+++  ++     +++   L+QP  L     +    L H+  
Sbjct: 226 --FVTYLHHTVKSIRGFVKLMVEQMKLAAWDIDMAAELIQPDVLYYKQDHKCFALEHY-- 281

Query: 420 FINQCFFQDFENCVFQKNGCAKLLDPRVYRESQFSSFVALRKLSWNEVLRKGTKYYSEGF 479
            + +   + F+   F      K    R  +   F  F  LR +   E L    K      
Sbjct: 282 -VCKIMLEAFQLPYFSNESSKK--TSREDKAMFFERFTELRSMKPREYLASRPK---SRL 335

Query: 480 SKFCDQK-MSCVNTSLNWT-------------RPWPE-QLLQAFFVAAKCMWLLHFLAFS 524
           +KFC  K +  ++  +                  +PE  L  AF   AK +WLLH LAFS
Sbjct: 336 AKFCRTKYLQLIHPKMEQAFFGHLHQRNQVTAGEFPETSLCTAFLEMAKRVWLLHCLAFS 395

Query: 525 FNPPLGVFRVEENATF 540
           F+P   +F+V     F
Sbjct: 396 FDPEASIFQVSRGCRF 411


>AT3G14870.1 | Symbols:  | Plant protein of unknown function
           (DUF641) | chr3:5004159-5005586 FORWARD LENGTH=475
          Length = 475

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 131/316 (41%), Gaps = 45/316 (14%)

Query: 255 PNTAESED--VSQALKDFGIMSIDTLKKELNEANENRDLALMEVSEMRSSLG-------E 305
           PN  +  D  V   LK    +    LKK+L+  N +R L L E+ E+RS L        +
Sbjct: 115 PNGIQKADNLVVAELKTLSELKQSFLKKQLD-PNPDRTLVLAEIQELRSVLKTYEIMGKK 173

Query: 306 LQQKLEYLESYCEDLKKALRQAMEPKDTQLYEQLNN---IPKPFDGNGKNSMPVSEEAMV 362
           L+ +L+  +S    LK+  +++M  ++  + ++LN    +  P D N   S   S     
Sbjct: 174 LECQLKLKDSEIIFLKEKFQESM-TQNKLMEKRLNQSGQLCNPLDHNLHLSAVSSTH--- 229

Query: 363 EGFLQIVSESRLSVKQFCKILINNIEETDHSLNL---LLQPYKLSLNSKNSKAVLYHFEA 419
             F+  +  +  S++ F K+++  ++     +++   L+QP  L     +    L H+  
Sbjct: 230 --FVTYLHHTVKSIRGFVKLMVEQMKLAAWDIDMAAELIQPDVLYYKQDHKCFALEHY-- 285

Query: 420 FINQCFFQDFENCVFQKNGCAKLLDPRVYRESQFSSFVALRKLSWNEVLRKGTKYYSEGF 479
            + +   + F+   F      K    R  +   F  F  LR +   E L    K      
Sbjct: 286 -VCKIMLEAFQLPYFSNESSKK--TSREDKAMFFERFTELRSMKPREYLASRPK---SRL 339

Query: 480 SKFCDQK-MSCVNTSLNWT-------------RPWPE-QLLQAFFVAAKCMWLLHFLAFS 524
           +KFC  K +  ++  +                  +PE  L  AF   AK +WLLH LAFS
Sbjct: 340 AKFCRTKYLQLIHPKMEQAFFGHLHQRNQVTAGEFPETSLCTAFLEMAKRVWLLHCLAFS 399

Query: 525 FNPPLGVFRVEENATF 540
           F+P   +F+V     F
Sbjct: 400 FDPEASIFQVSRGCRF 415


>AT3G14870.3 | Symbols:  | Plant protein of unknown function
           (DUF641) | chr3:5004040-5005586 FORWARD LENGTH=472
          Length = 472

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 131/316 (41%), Gaps = 45/316 (14%)

Query: 255 PNTAESED--VSQALKDFGIMSIDTLKKELNEANENRDLALMEVSEMRSSLG-------E 305
           PN  +  D  V   LK    +    LKK+L+  N +R L L E+ E+RS L        +
Sbjct: 112 PNGIQKADNLVVAELKTLSELKQSFLKKQLD-PNPDRTLVLAEIQELRSVLKTYEIMGKK 170

Query: 306 LQQKLEYLESYCEDLKKALRQAMEPKDTQLYEQLNN---IPKPFDGNGKNSMPVSEEAMV 362
           L+ +L+  +S    LK+  +++M  ++  + ++LN    +  P D N   S   S     
Sbjct: 171 LECQLKLKDSEIIFLKEKFQESM-TQNKLMEKRLNQSGQLCNPLDHNLHLSAVSSTH--- 226

Query: 363 EGFLQIVSESRLSVKQFCKILINNIEETDHSLNL---LLQPYKLSLNSKNSKAVLYHFEA 419
             F+  +  +  S++ F K+++  ++     +++   L+QP  L     +    L H+  
Sbjct: 227 --FVTYLHHTVKSIRGFVKLMVEQMKLAAWDIDMAAELIQPDVLYYKQDHKCFALEHY-- 282

Query: 420 FINQCFFQDFENCVFQKNGCAKLLDPRVYRESQFSSFVALRKLSWNEVLRKGTKYYSEGF 479
            + +   + F+   F      K    R  +   F  F  LR +   E L    K      
Sbjct: 283 -VCKIMLEAFQLPYFSNESSKK--TSREDKAMFFERFTELRSMKPREYLASRPK---SRL 336

Query: 480 SKFCDQK-MSCVNTSLNWT-------------RPWPE-QLLQAFFVAAKCMWLLHFLAFS 524
           +KFC  K +  ++  +                  +PE  L  AF   AK +WLLH LAFS
Sbjct: 337 AKFCRTKYLQLIHPKMEQAFFGHLHQRNQVTAGEFPETSLCTAFLEMAKRVWLLHCLAFS 396

Query: 525 FNPPLGVFRVEENATF 540
           F+P   +F+V     F
Sbjct: 397 FDPEASIFQVSRGCRF 412


>AT3G60680.1 | Symbols:  | Plant protein of unknown function
           (DUF641) | chr3:22430246-22431745 FORWARD LENGTH=499
          Length = 499

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 122/279 (43%), Gaps = 44/279 (15%)

Query: 290 DLALMEVSEMRSSLGELQQKLEYLESYCEDLKKALRQAMEPKDTQLYEQLNNIPKPFDGN 349
           DLA+    E R  + E Q KL  LE+    +   L+  M+ KD Q++   N + +     
Sbjct: 184 DLAIGSCLESR--VQENQSKLRALET----VSNRLQAEMDAKDLQVWSLRNKLGEIQKST 237

Query: 350 GKNSMPVSEEAMVEGFLQI-VSESRL-----SVKQFCKILINNIEETDHSLNLLLQPYKL 403
            K S  +S  + ++  L + V ES L     + ++F KILI  +E+    L+L+ +    
Sbjct: 238 SKLSKRLSSNSSLDVLLSVRVFESLLYDAFKATQKFTKILIELMEKAGWDLDLVAKSVHP 297

Query: 404 SLNSKNSKAVLYHFEAFINQCFFQDFENCVFQKNGCAKLLDPRVYRESQFSSF-VALRKL 462
            ++    +   Y   +++    F+ F+   F        L+   Y ES+ SS   +LR+L
Sbjct: 298 EVDYAKERHNRYALLSYVCLGMFRGFDGEGFD-------LNENDYEESERSSVDSSLREL 350

Query: 463 SWN------EVLRKGTKYYSEGFSKFCDQK---------MSCVNTSLNWTRP----WPE- 502
             +      E+L +        FS+FCD+K          S + ++++        W   
Sbjct: 351 MQHVSSNPMELLDRDKDC---AFSRFCDKKYHELIHPNMASSIFSNMDENEAVLSSWRSL 407

Query: 503 -QLLQAFFVAAKCMWLLHFLAFSFNPPLGVFRVEENATF 540
               ++F   A  +W LH LA SF+P + +F+VE    F
Sbjct: 408 STFYESFVTMASSIWTLHKLALSFDPAVEIFQVESGVEF 446