Miyakogusa Predicted Gene
- Lj0g3v0132489.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0132489.1 tr|A9RVJ9|A9RVJ9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_161310,29.95,7e-17,RRM_1,RNA recognition motif domain;
RRM_5,NULL; SPOC,Spen paralogue and orthologue SPOC,
C-terminal;,CUFF.8071.1
(737 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing... 549 e-156
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 152 6e-37
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 152 6e-37
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 152 6e-37
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 152 7e-37
>AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:7462697-7467630 FORWARD LENGTH=823
Length = 823
Score = 549 bits (1414), Expect = e-156, Method: Compositional matrix adjust.
Identities = 312/637 (48%), Positives = 409/637 (64%), Gaps = 24/637 (3%)
Query: 45 HPPSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSL 104
+PPSRHLWVGNL H I+E ELA FLRFG L+S+AFQPGRS+AF+NF DEDA A+ SL
Sbjct: 19 NPPSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESL 78
Query: 105 QGFPLAGNSLRIEYAKADKPPI-TXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPH 163
QGFPL+GN LRIE+AKA+K + A RGSS V R+ R R++SP+ +
Sbjct: 79 QGFPLSGNPLRIEFAKAEKSSTGSRTDDIYRHDEQRSAARGSSFV-QRDSRMRYESPDTY 137
Query: 164 YXXXXXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFR 223
EPSEVL++GFPA LKV++++LR FS FGEI K+T F GRSYAFV+FR
Sbjct: 138 --SKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFR 195
Query: 224 SLTSACRARDNLRGKLFGNPRVHICFAKXXXXXXXXXXXXXXXXXXPLYKPRDRDGSSEN 283
+L +AC+A+++L+GKLFGNPRVHICFAK P Y+ DR GSSE
Sbjct: 196 NLMAACKAKESLQGKLFGNPRVHICFAKSEPSSSGSGRGPSGRSLSPPYRSVDRLGSSEG 255
Query: 284 LILDRSFGGDRNISS---PNLYRNRDSGDSGSYDFNLRXXXXXXXXXXXXEQRNIGQKGT 340
+ DR++G I S P+ +RD DS Y FN + R+ +
Sbjct: 256 YLQDRNYGSISRIPSVREPHYIEDRDLEDSEGYIFNRKRDSSSDGGPAYGRSRSTHRFPQ 315
Query: 341 SLGAPHEFYGHINSPPRERNVHLGDFPQKFPQRGAFFEDQQAMPEDIPYLHEAKRLRTGP 400
+ HE++G P E D P +F R + +E+ +PED Y E KRL+T
Sbjct: 316 DM---HEYHGS----PGEMGTSFRDNPHRFQTRSSEYEEPWDLPEDDYYYQEIKRLKTRS 368
Query: 401 SSPEGELPEYPFSEFERQKHVFPRLLPDFPQREHFDQSFDSGNFAYRQTLDHRPNSPLAP 460
S PE +LP + S E+++ F R DF ++ F++++++G Y QT++ N +
Sbjct: 369 SQPERQLPGHQLSGIEQERRPFSRASADFSPKDAFERNYEAGQLRYNQTVEQPLNLAIRN 428
Query: 461 LDNRHEGWKPYDSFPMGPGTLNSQSKFVEKKIFTPEPDNSSVSEWKWEGTIAKGGTPVCR 520
D + +P++ MG L S E+K +TPE + S+ +W WEGTIAKGG P+CR
Sbjct: 429 GD-KSSLREPHEEL-MGGYPL--PSVVPERKRYTPELNRPSLKDWNWEGTIAKGGNPICR 484
Query: 521 ARCFPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVVFFVPGSDADIEFYNEFMH 580
A+CFPVGKV+D++LP+FLDCTART LDMLAKHYYQ+ WVVFFVPGSDADI FY+EFMH
Sbjct: 485 AKCFPVGKVMDMMLPEFLDCTARTGLDMLAKHYYQSSKAWVVFFVPGSDADIVFYDEFMH 544
Query: 581 YLEEKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISGVILRLEY-PTLNHGPMPI 639
YLEEKQRAAV+KLDD TT+FLVPPS+FSEKVLKVPGKLSISGVILRLE + + GP+
Sbjct: 545 YLEEKQRAAVSKLDDTTTLFLVPPSDFSEKVLKVPGKLSISGVILRLECGGSGSGGPVQQ 604
Query: 640 EGVMKNENLLS-YNENAFNPNS-SFPSV---RIPPPS 671
+G K+ +LL+ Y E +++ S +FP V RIP P+
Sbjct: 605 QGERKDTDLLTYYGETSYSEASGAFPDVGNPRIPGPT 641
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 91/130 (70%)
Query: 503 SEWKWEGTIAKGGTPVCRARCFPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVV 562
S+ W G IAKGGTPVC ARC P+GK ++ LP+ ++C+ART L+MLAKHY A+G +V
Sbjct: 437 SDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAIGCEIV 496
Query: 563 FFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISG 622
FFVP + D Y EF+ YL K RA VAKLDD TT+FLVPPS+F VL+V + + G
Sbjct: 497 FFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQERLYG 556
Query: 623 VILRLEYPTL 632
V+L+L P +
Sbjct: 557 VVLKLPPPAV 566
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 21/206 (10%)
Query: 47 PSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQG 106
P + LWVG + ++ +D+L F +FG ++ F R AFI++ +DA+ A +S+ G
Sbjct: 93 PCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNG 151
Query: 107 FPLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXX 166
P+ G+ LR+++ ++ P + + NR H +P Y
Sbjct: 152 KPMGGSFLRVDFLRSQAP---------------KKEQWAGSYDNRNGNMNH---KPQYPH 193
Query: 167 XXXXXXXXXEPSEVLWVGFP--AQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRS 224
+PS+VLW+GFP A +E IL A FGEIE++ ++ R++A V FRS
Sbjct: 194 SYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRS 253
Query: 225 LTSACRARDNLRGKLFGNPRVHICFA 250
A + ++ L+G+LF NPR+ I ++
Sbjct: 254 AEEARQCKEGLQGRLFNNPRIKIMYS 279
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 55/204 (26%)
Query: 48 SRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQGF 107
S +LWVG+L+ + E +L F R+G +D + R FAFI ++ E+A+ A +LQG
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 108 PLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXXX 167
L G+ ++IEYA+ KP
Sbjct: 77 NLNGSQIKIEYARPAKP------------------------------------------- 93
Query: 168 XXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSLTS 227
+ LWVG V + L FS FG+IE R AF+ + +
Sbjct: 94 ----------CKSLWVGGIGP-NVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDD 142
Query: 228 ACRARDNLRGKLFGNPRVHICFAK 251
A +A+ ++ GK G + + F +
Sbjct: 143 ALQAK-SMNGKPMGGSFLRVDFLR 165
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 91/130 (70%)
Query: 503 SEWKWEGTIAKGGTPVCRARCFPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVV 562
S+ W G IAKGGTPVC ARC P+GK ++ LP+ ++C+ART L+MLAKHY A+G +V
Sbjct: 437 SDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAIGCEIV 496
Query: 563 FFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISG 622
FFVP + D Y EF+ YL K RA VAKLDD TT+FLVPPS+F VL+V + + G
Sbjct: 497 FFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQERLYG 556
Query: 623 VILRLEYPTL 632
V+L+L P +
Sbjct: 557 VVLKLPPPAV 566
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 21/206 (10%)
Query: 47 PSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQG 106
P + LWVG + ++ +D+L F +FG ++ F R AFI++ +DA+ A +S+ G
Sbjct: 93 PCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNG 151
Query: 107 FPLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXX 166
P+ G+ LR+++ ++ P + + NR H +P Y
Sbjct: 152 KPMGGSFLRVDFLRSQAP---------------KKEQWAGSYDNRNGNMNH---KPQYPH 193
Query: 167 XXXXXXXXXEPSEVLWVGFP--AQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRS 224
+PS+VLW+GFP A +E IL A FGEIE++ ++ R++A V FRS
Sbjct: 194 SYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRS 253
Query: 225 LTSACRARDNLRGKLFGNPRVHICFA 250
A + ++ L+G+LF NPR+ I ++
Sbjct: 254 AEEARQCKEGLQGRLFNNPRIKIMYS 279
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 55/204 (26%)
Query: 48 SRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQGF 107
S +LWVG+L+ + E +L F R+G +D + R FAFI ++ E+A+ A +LQG
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 108 PLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXXX 167
L G+ ++IEYA+ KP
Sbjct: 77 NLNGSQIKIEYARPAKP------------------------------------------- 93
Query: 168 XXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSLTS 227
+ LWVG V + L FS FG+IE R AF+ + +
Sbjct: 94 ----------CKSLWVGGIGP-NVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDD 142
Query: 228 ACRARDNLRGKLFGNPRVHICFAK 251
A +A+ ++ GK G + + F +
Sbjct: 143 ALQAK-SMNGKPMGGSFLRVDFLR 165
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 91/130 (70%)
Query: 503 SEWKWEGTIAKGGTPVCRARCFPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVV 562
S+ W G IAKGGTPVC ARC P+GK ++ LP+ ++C+ART L+MLAKHY A+G +V
Sbjct: 437 SDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAIGCEIV 496
Query: 563 FFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISG 622
FFVP + D Y EF+ YL K RA VAKLDD TT+FLVPPS+F VL+V + + G
Sbjct: 497 FFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQERLYG 556
Query: 623 VILRLEYPTL 632
V+L+L P +
Sbjct: 557 VVLKLPPPAV 566
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 21/206 (10%)
Query: 47 PSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQG 106
P + LWVG + ++ +D+L F +FG ++ F R AFI++ +DA+ A +S+ G
Sbjct: 93 PCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNG 151
Query: 107 FPLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXX 166
P+ G+ LR+++ ++ P + + NR H +P Y
Sbjct: 152 KPMGGSFLRVDFLRSQAP---------------KKEQWAGSYDNRNGNMNH---KPQYPH 193
Query: 167 XXXXXXXXXEPSEVLWVGFP--AQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRS 224
+PS+VLW+GFP A +E IL A FGEIE++ ++ R++A V FRS
Sbjct: 194 SYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRS 253
Query: 225 LTSACRARDNLRGKLFGNPRVHICFA 250
A + ++ L+G+LF NPR+ I ++
Sbjct: 254 AEEARQCKEGLQGRLFNNPRIKIMYS 279
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 55/204 (26%)
Query: 48 SRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQGF 107
S +LWVG+L+ + E +L F R+G +D + R FAFI ++ E+A+ A +LQG
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 108 PLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXXX 167
L G+ ++IEYA+ KP
Sbjct: 77 NLNGSQIKIEYARPAKP------------------------------------------- 93
Query: 168 XXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSLTS 227
+ LWVG V + L FS FG+IE R AF+ + +
Sbjct: 94 ----------CKSLWVGGIGP-NVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDD 142
Query: 228 ACRARDNLRGKLFGNPRVHICFAK 251
A +A+ ++ GK G + + F +
Sbjct: 143 ALQAK-SMNGKPMGGSFLRVDFLR 165
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 91/130 (70%)
Query: 503 SEWKWEGTIAKGGTPVCRARCFPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVV 562
S+ W G IAKGGTPVC ARC P+GK ++ LP+ ++C+ART L+MLAKHY A+G +V
Sbjct: 394 SDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAIGCEIV 453
Query: 563 FFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISG 622
FFVP + D Y EF+ YL K RA VAKLDD TT+FLVPPS+F VL+V + + G
Sbjct: 454 FFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQERLYG 513
Query: 623 VILRLEYPTL 632
V+L+L P +
Sbjct: 514 VVLKLPPPAV 523
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 21/206 (10%)
Query: 47 PSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQG 106
P + LWVG + ++ +D+L F +FG ++ F R AFI++ +DA+ A +S+ G
Sbjct: 93 PCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNG 151
Query: 107 FPLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXX 166
P+ G+ LR+++ ++ P + + NR H +P Y
Sbjct: 152 KPMGGSFLRVDFLRSQAP---------------KKEQWAGSYDNRNGNMNH---KPQYPH 193
Query: 167 XXXXXXXXXEPSEVLWVGFP--AQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRS 224
+PS+VLW+GFP A +E IL A FGEIE++ ++ R++A V FRS
Sbjct: 194 SYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRS 253
Query: 225 LTSACRARDNLRGKLFGNPRVHICFA 250
A + ++ L+G+LF NPR+ I ++
Sbjct: 254 AEEARQCKEGLQGRLFNNPRIKIMYS 279
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 55/204 (26%)
Query: 48 SRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQGF 107
S +LWVG+L+ + E +L F R+G +D + R FAFI ++ E+A+ A +LQG
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 108 PLAGNSLRIEYAKADKPPITXXXXXXXXXXXXXALRGSSPVSNREHRGRHDSPEPHYXXX 167
L G+ ++IEYA+ KP
Sbjct: 77 NLNGSQIKIEYARPAKP------------------------------------------- 93
Query: 168 XXXXXXXXEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSLTS 227
+ LWVG V + L FS FG+IE R AF+ + +
Sbjct: 94 ----------CKSLWVGGIGP-NVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDD 142
Query: 228 ACRARDNLRGKLFGNPRVHICFAK 251
A +A+ ++ GK G + + F +
Sbjct: 143 ALQAK-SMNGKPMGGSFLRVDFLR 165