Miyakogusa Predicted Gene

Lj0g3v0132309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132309.1 tr|Q108W5|Q108W5_ORYSJ Expressed protein OS=Oryza
sativa subsp. japonica GN=LOC_Os10g42196 PE=4 SV=1,39.42,3e-19,
,CUFF.8053.1
         (196 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   134   4e-32
AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   113   7e-26
AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   111   3e-25
AT1G43770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    83   1e-16

>AT1G43770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:16548509-16550257 FORWARD LENGTH=431
          Length = 431

 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 89/142 (62%), Gaps = 2/142 (1%)

Query: 52  PIVDPTWRGSWCFSNQSSDTFTGLFAHLSTLACPKVLEETRLFPEVLSANLLPRSAVWPK 111
           PI  P WRG       +S T  G+ AH+S+LACPKV E        LSA +LPR  VWPK
Sbjct: 287 PIKIPIWRGLMSVKGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPK 346

Query: 112 GF-SESGPNDESIALYFFPESESV-ERAYDNLVDDMISHDLGIKAMIKNAELLVFPSTVL 169
            F    GP DES+AL+FFP SES  E+ +D+LVD M  +D  ++ ++ +AELL+F S +L
Sbjct: 347 TFLKNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSYML 406

Query: 170 PIKHRRFQAKYYLWGVFRAKQA 191
           P     F +KYYLWGVF+ +Q 
Sbjct: 407 PKDSWTFNSKYYLWGVFKPRQT 428


>AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:5467534-5472956 REVERSE LENGTH=1311
          Length = 1311

 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 2/126 (1%)

Query: 66  NQSSDTFTGLFAHLSTLACPKVLEETRLFPEVLSANLLPRSAVWPKGFSESGPNDESIAL 125
           NQS+   +G+ AHLSTLA P+V E    FPE  S N +PR + WP  F + G  +  IAL
Sbjct: 849 NQSA-MHSGIQAHLSTLASPRVAEVVNKFPETFSLNEVPRKSTWPTQFEKLGTKEAHIAL 907

Query: 126 YFF-PESESVERAYDNLVDDMISHDLGIKAMIKNAELLVFPSTVLPIKHRRFQAKYYLWG 184
           +FF  ++ES ER Y  LVD+MI +DL +K  + N +LL+F S  LP   +R+   Y+LWG
Sbjct: 908 FFFAKDTESYERNYKPLVDNMIKNDLALKGNLDNVDLLIFASNQLPSNCQRWNMLYFLWG 967

Query: 185 VFRAKQ 190
           VF+ ++
Sbjct: 968 VFQGRK 973


>AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:640828-645303 FORWARD LENGTH=994
          Length = 994

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 81/125 (64%), Gaps = 1/125 (0%)

Query: 73  TGLFAHLSTLACPKVLEETRLFPEVLSANLLPRSAVWPKGFSESGPNDESIALYFFPES- 131
           +G+ A+LSTLA PKV+E  + FPE ++ N +PR + WP  F ++G  ++ +AL+FF +  
Sbjct: 718 SGIQAYLSTLASPKVVEVVKQFPEKVTLNEVPRLSSWPAQFQDTGAKEQHVALFFFAKDI 777

Query: 132 ESVERAYDNLVDDMISHDLGIKAMIKNAELLVFPSTVLPIKHRRFQAKYYLWGVFRAKQA 191
           ES E+ Y  LVD+MI  DL +K  ++  ELL+F S  LP   +R+   ++LWGVFR K+ 
Sbjct: 778 ESYEKNYKPLVDNMIQKDLALKGNLEGVELLIFASNQLPQDCQRWNMLFFLWGVFRGKKE 837

Query: 192 VLISP 196
              +P
Sbjct: 838 SCSNP 842


>AT1G43770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:16548509-16549907 FORWARD LENGTH=371
          Length = 371

 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 52  PIVDPTWRGSWCFSNQSSDTFTGLFAHLSTLACPKVLEETRLFPEVLSANLLPRSAVWPK 111
           PI  P WRG       +S T  G+ AH+S+LACPKV E        LSA +LPR  VWPK
Sbjct: 287 PIKIPIWRGLMSVKGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPK 346

Query: 112 GF-SESGPNDESIALYFFPESE 132
            F    GP DES+AL+FFP SE
Sbjct: 347 TFLKNGGPKDESVALFFFPSSE 368