Miyakogusa Predicted Gene

Lj0g3v0132099.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132099.3 Non Chatacterized Hit- tr|I3T3G0|I3T3G0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.77,0,SUBFAMILY
NOT NAMED,NULL; CYSTINOSIN,Lysosomal cystine transporter; Repeated
motif present between t,CUFF.8059.3
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40670.1 | Symbols:  | PQ-loop repeat family protein / transm...   260   3e-70

>AT5G40670.1 | Symbols:  | PQ-loop repeat family protein /
           transmembrane family protein | chr5:16285968-16287591
           FORWARD LENGTH=270
          Length = 270

 Score =  260 bits (665), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 124/185 (67%), Positives = 151/185 (81%), Gaps = 4/185 (2%)

Query: 1   MIPVAANDVAFSIHAVLLTAISLFQIAIYDRGSQKISKVAYGILLVAWSTAAVCFFIALH 60
           MIPVAANDVAFSIHAV++TA++LFQI IY+RG QK+S++A GI++V W  AA+CFFIAL 
Sbjct: 85  MIPVAANDVAFSIHAVVMTAVTLFQIFIYERGPQKVSRLAIGIVVVVWGFAAICFFIALP 144

Query: 61  NHHWLWLLSIFTAIQISMTVIKYIPQAVMNFMRKSTDGWSIGNILLDFSGGLGNYLQMAV 120
            H WLWL+SIF +IQ+ MT +KYIPQA MNF RKST GWSIGNILLDF+GGL NYLQM +
Sbjct: 145 THSWLWLISIFNSIQVFMTCVKYIPQAKMNFTRKSTVGWSIGNILLDFTGGLANYLQMVI 204

Query: 121 QSIDQGSWVNFYGNIGKLLISLVSVFFDILFMIQHYLLYPASKRKSKTSPDLDNPKSSNR 180
           QSIDQ SW NFYGN+GK L+SL+S+FFDILFM QHY+LYP  ++K   SP+    + SN 
Sbjct: 205 QSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYP--EKKVSKSPETG--EESNE 260

Query: 181 QLSDN 185
            L D+
Sbjct: 261 PLIDS 265