Miyakogusa Predicted Gene

Lj0g3v0132019.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0132019.1 Non Chatacterized Hit- tr|G7KL59|G7KL59_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,41.81,2e-17,CDT1,CDT1 Geminin-binding domain-like; "Winged
helix" DNA-binding domain,NULL; seg,NULL; DNA replica,CUFF.8035.1
         (540 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | homolog of yeast C...   136   4e-32
AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast C...   105   1e-22

>AT3G54710.1 | Symbols: ATCDT1B, CDT1B, CDT1 | homolog of yeast CDT1
           B homolog of yeast CDT1 B | chr3:20251885-20254031
           FORWARD LENGTH=486
          Length = 486

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 145/490 (29%), Positives = 217/490 (44%), Gaps = 71/490 (14%)

Query: 53  QLPEKYRTIADXXXXXXXXXXXXXXXKKPQTFQNICKQVEVLAERKFSYAHLARMKYILP 112
           +LPE++  + +                   T+ NIC ++E L  R FSY HLA+MK+I P
Sbjct: 45  KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYP 104

Query: 113 EGILVDKVLVHDKKSLCMKPDIKITLVFD--VVEEHCELSADMALRRYFNSRLIDYFKMH 170
           E I + +VL   + + CMKP + I L  D  VVE+    +  M LR+ F+S+L+D+ K H
Sbjct: 105 EAIELKRVLKFVEDTCCMKPRLHIKLNTDAIVVEDTICGTKYMELRKVFHSKLVDFRKAH 164

Query: 171 PEAADIPEAILPEPCG--QRSCH--LISEDF--PVISSTALSSTSNQIEQSPEKFN-LYP 223
           P+  +IP+ +LPEP    QR  +  ++S     P +          +IEQ  +  N + P
Sbjct: 165 PK-DEIPKELLPEPFNSPQRDSYSGIVSVGLGEPKLEVGGFDVHMEEIEQEEQDVNKVIP 223

Query: 224 SFT-RHFSQKIVADQTEKVHDLSSTKTCLSSDVSDCPDIPECERKGQKECAALSDHLNTE 282
             T  H   +IV      V DLS+    LS+ +      P  +    K C  L     T 
Sbjct: 224 DSTLSHIESRIVE---TPVKDLSTPSKDLSTPIRLMSATPTLQL--SKRCIEL-----TP 273

Query: 283 RGQQKESFSICYQPSVTNTPVRMFGHSVSHGNSESPEVKMVSCVDSFVIETPAQSAPGRL 342
            G    S         TN+  R    S++               D+F  +   +   G  
Sbjct: 274 EGGDDNSL------RSTNSLARGPSRSLN--------------FDTFEEDAIEKDDIGN- 312

Query: 343 LPVSDDKLQNMTYPKSTSCSKTAKRVLDFSGMESNEGLDNRVDIS-ESSSATHEFHGIPQ 401
              SDDK  N          K   R L+F  +E    + +  DIS ES      + G   
Sbjct: 313 --ESDDKGINYEEDGLLQSVKGPSRSLNFDTLEEETIVKD--DISNESGDEKSNYEG--- 365

Query: 402 PSISFSEDCNSFDSVALPLEVEESLGYSFEKTDQNQGGLGNKNISSLVDMVNVIGSIFQS 461
                  D  S D   L   +E        KT+  +  L       LV++++    +F S
Sbjct: 366 -------DNASDDDSLLQSMIERP------KTEPEKHNL-----PQLVNLIH---RVFHS 404

Query: 462 VKRTPITKEELLQKIIMNSLDFDEIGEVEKQIEILEKLVPDWICKKLVSSGDVMYSIKKV 521
             RT ITKEELL KII N ++  +  EVE+Q+ ++ +LVPDWI +   SSGD++  I K+
Sbjct: 405 TNRTVITKEELLYKIIANQINITDRREVEEQLSLMLQLVPDWISETKASSGDLLVRINKM 464

Query: 522 SDLDSVRSRL 531
           S  ++VR+RL
Sbjct: 465 STAETVRARL 474


>AT2G31270.1 | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast CDT1
           A | chr2:13329037-13331544 FORWARD LENGTH=571
          Length = 571

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 3/127 (2%)

Query: 50  EQTQLPEKYRTIADXXXXXXXXXXXXXXXKKPQTFQNICKQVEVLAERKFSYAHLARMKY 109
           E+ +LPEKY  +                     TF NI KQ+E L ER+F Y+HLA++K+
Sbjct: 107 EKEKLPEKYENLGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKH 166

Query: 110 ILPEGILVDKVLVHDKKSLCMKPDIKITLVFDVVEEHCEL---SADMALRRYFNSRLIDY 166
           ILPE I + +VL+HD+ + CMKPD+ +TL  D VE + +    S  +ALR+ F +RL D+
Sbjct: 167 ILPEAIEIKRVLIHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADF 226

Query: 167 FKMHPEA 173
            K HP+ 
Sbjct: 227 VKAHPQG 233



 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 60/89 (67%)

Query: 443 KNISSLVDMVNVIGSIFQSVKRTPITKEELLQKIIMNSLDFDEIGEVEKQIEILEKLVPD 502
           K I+ L  + NVI  + QS++R  ITKEEL+ KII    D  +  EVE+Q+ +L+++VP+
Sbjct: 470 KMIACLPKLFNVIHYLIQSIRRWVITKEELVHKIIAGHSDITDRKEVEEQLILLQEIVPE 529

Query: 503 WICKKLVSSGDVMYSIKKVSDLDSVRSRL 531
           W+ +K  SSGDV+  I K++   ++RSRL
Sbjct: 530 WMSEKKSSSGDVLVCINKLASPLTIRSRL 558