Miyakogusa Predicted Gene

Lj0g3v0131939.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0131939.2 Non Chatacterized Hit- tr|G6FZU7|G6FZU7_9CYAN
Putative uncharacterized protein OS=Fischerella sp.
JS,52.58,4e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.8231.2
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43945.1 | Symbols:  | unknown protein; LOCATED IN: chloropla...   231   3e-61
AT3G59870.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   224   4e-59

>AT2G43945.1 | Symbols:  | unknown protein; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT3G59870.1); Has 292 Blast hits to 292
           proteins in 84 species: Archae - 0; Bacteria - 122;
           Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other
           Eukaryotes - 124 (source: NCBI BLink). |
           chr2:18197995-18199988 REVERSE LENGTH=289
          Length = 289

 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 141/202 (69%), Gaps = 19/202 (9%)

Query: 34  AANPNFNAFSVSLSQQHRRLGGYWNKTASKPFFPRRTWLYG---------HMKRDQDRHT 84
           + NPNF           RRL      ++    F  R   Y          HM+  ++   
Sbjct: 36  SKNPNFK----------RRLSSSSCCSSQSQLFSGRCRSYSRCVTMCLPEHMRNQENTEI 85

Query: 85  PDYELENGLGLFGSDEQRGTQIPTQAQSLVEGPGAIRVAEYKPVPDVDYLQELLAIQQQG 144
              + ++   +  SDE  G +IPTQAQ++VEG G++ V+E KP  DVDY+QELLAIQQQG
Sbjct: 86  LTDKDDHIECVLESDEDSGLRIPTQAQAIVEGSGSVAVSELKPAADVDYIQELLAIQQQG 145

Query: 145 PRAIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPDFLT 204
           PR+IGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAE+P+ LT
Sbjct: 146 PRSIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAERPELLT 205

Query: 205 VILPQSLSKQPPESQELLSKVR 226
           VILPQSL KQPPESQELLSKV+
Sbjct: 206 VILPQSLKKQPPESQELLSKVQ 227


>AT3G59870.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT2G43945.1); Has 292 Blast
           hits to 292 proteins in 84 species: Archae - 0; Bacteria
           - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0;
           Other Eukaryotes - 124 (source: NCBI BLink). |
           chr3:22116361-22118052 REVERSE LENGTH=288
          Length = 288

 Score =  224 bits (571), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/165 (70%), Positives = 132/165 (80%), Gaps = 11/165 (6%)

Query: 66  FPRRTWLYGHMKRDQDRHTPDYELENGLGL-FGSDEQR---GTQIPTQAQSLVEGPGAIR 121
           FP +T       RDQD        E+ +   F SDE     G +IPTQAQ++VEGPG++ 
Sbjct: 69  FPEQT-------RDQDDVDSWVNKEDNVTCRFDSDEDTTTTGLRIPTQAQAIVEGPGSLA 121

Query: 122 VAEYKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTS 181
           V+E + VPDVDY+QELLAIQQQGPR IGFFGTRNMGFMHQELI+ILSYAMVITKNHIYTS
Sbjct: 122 VSELQRVPDVDYIQELLAIQQQGPRTIGFFGTRNMGFMHQELIQILSYAMVITKNHIYTS 181

Query: 182 GASGTNAAVIRGALRAEKPDFLTVILPQSLSKQPPESQELLSKVR 226
           GA+GTNAAVIRGALRAE+P+ LTVILPQSL KQPPESQELLSKV+
Sbjct: 182 GAAGTNAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQ 226