Miyakogusa Predicted Gene

Lj0g3v0131839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0131839.1 Non Chatacterized Hit- tr|I3SJI7|I3SJI7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,no
description,K homology domain-like, alpha/beta; KH_2,K Homology
domain, type 2; 40S RIBOSOMAL PRO,CUFF.8018.1
         (95 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31610.1 | Symbols:  | Ribosomal protein S3 family protein | ...   182   6e-47
AT5G35530.1 | Symbols:  | Ribosomal protein S3 family protein | ...   180   2e-46
AT3G53870.1 | Symbols:  | Ribosomal protein S3 family protein | ...   179   3e-46

>AT2G31610.1 | Symbols:  | Ribosomal protein S3 family protein |
          chr2:13450384-13451669 FORWARD LENGTH=250
          Length = 250

 Score =  182 bits (461), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 93/95 (97%)

Query: 1  MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLG 60
          MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPM+TEIIIRATRTQ VLG
Sbjct: 1  MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
          EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRG
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRG 95


>AT5G35530.1 | Symbols:  | Ribosomal protein S3 family protein |
          chr5:13710355-13712192 REVERSE LENGTH=248
          Length = 248

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 93/95 (97%)

Query: 1  MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLG 60
          MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPM+TEIIIRATRTQ VLG
Sbjct: 1  MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
          EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRG
Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRG 95


>AT3G53870.1 | Symbols:  | Ribosomal protein S3 family protein |
          chr3:19951547-19952782 FORWARD LENGTH=249
          Length = 249

 Score =  179 bits (454), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 92/95 (96%)

Query: 1  MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLG 60
          M TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPM+TEIIIRATRTQ VLG
Sbjct: 1  MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRG 95
          EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRG
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRG 95