Miyakogusa Predicted Gene

Lj0g3v0131529.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0131529.1 Non Chatacterized Hit- tr|I1JXG4|I1JXG4_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,76.48,0,Elongator
protein 3, MiaB family, Radical SA,Elongator protein 3/MiaB/NifB;
Radical_SAM,Radical SAM;,CUFF.7995.1
         (485 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63290.1 | Symbols:  | Radical SAM superfamily protein | chr5...   585   e-167

>AT5G63290.1 | Symbols:  | Radical SAM superfamily protein |
           chr5:25369349-25370894 REVERSE LENGTH=484
          Length = 484

 Score =  585 bits (1507), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 285/485 (58%), Positives = 358/485 (73%), Gaps = 16/485 (3%)

Query: 1   MLKSTFSPIFWVLAPKPK-YPKLSPHAITNTFSNRTP-VVRHNSSMKHPIITAPLPSSAY 58
           MLK+T SPIF     KPK   KL   A +      TP   R N+S     +    P+SAY
Sbjct: 1   MLKTTISPIFSSFTGKPKCSSKLFFRAFSKVVLQDTPPSARRNASTNLTTLHKGPPTSAY 60

Query: 59  IHLPFCRKRCHYCDFTIIALGSAASTQ---------TDNDPRVLNYIQWLCREINATEVE 109
           +HLPFCRKRCHYCDF I+ALG ++S+           ++DPR+ NY+  L REI AT  +
Sbjct: 61  VHLPFCRKRCHYCDFPILALGMSSSSARPSNVYEEGKEDDPRITNYVNLLVREIKATRTD 120

Query: 110 EVSKTPLQTVYFGGGTPSLVPPSMVSLVMESLRKKFGLSEDAEISMEMDPGTFDAKKMRE 169
             +   L+TV+FGGGTPSLVPP +VSL++E+L   FGLS DAEISMEMDPGTFD +K+++
Sbjct: 121 FDTNPNLETVFFGGGTPSLVPPKLVSLILETLSLNFGLSPDAEISMEMDPGTFDGQKLKD 180

Query: 170 MMLLGVNRVSLGVQAFQEKLLMTCGRAHGVKEVYEAIDIVKSCGVENWSMDLIASLPHQT 229
           +M LGVNRVSLGVQAFQ++LL  CGRAHGV +VYEAI+ VK CGVENWSMDLI+SLPHQT
Sbjct: 181 LMKLGVNRVSLGVQAFQDELLKACGRAHGVSQVYEAIEFVKECGVENWSMDLISSLPHQT 240

Query: 230 LDMWEESLRLTIEAQPNHVSVYDLQIEQGTKFARQYSPGEFPLPSETQSADFYKMASRRL 289
           L+MWEESLRL IE+QPNHVSVYDLQ+EQGTKF   Y+PG+ PLPSETQSA+FYK AS  L
Sbjct: 241 LEMWEESLRLAIESQPNHVSVYDLQVEQGTKFGNLYTPGQSPLPSETQSAEFYKTASSML 300

Query: 290 YEASYNHYEISSYCKSGYESKHNFTYWENKPFYGFGLGSASFIGGLRFSRPKKVNDYVSY 349
             A Y HYE+SSY + G++ KHN  YW+NKPFY FGLGSAS++GGLRFSRP+++ +Y +Y
Sbjct: 301 RGAGYEHYEVSSYSRDGFKCKHNLIYWKNKPFYAFGLGSASYVGGLRFSRPRRLKEYTNY 360

Query: 350 VQNLENGLVNSSADEDNLVKDRAMDVVMLSLRTSRGLDLKCFQESFGSSVVLSLIEAYKP 409
           V +LENG  N   + D  +KD A D++MLS RTS+GL+LK F E+FGS VV S+ + Y+P
Sbjct: 361 VADLENGAANWCGNGDVDLKDVATDILMLSFRTSKGLELKEFGEAFGSEVVKSICKVYEP 420

Query: 410 YFESGHVVCLDEQRRTISIDDDGLSNSLLG--KTNTERRLVYLRLSDPEGFLLSNELIAL 467
           Y ESGH+VCLD+ R  + ID+     +L+   +   E  + YLRL DP+GFLLSNELI+L
Sbjct: 421 YVESGHIVCLDDMRSEVMIDE---FKTLVANDEVKIEDHVRYLRLKDPDGFLLSNELISL 477

Query: 468 AFGVI 472
           +FGV+
Sbjct: 478 SFGVV 482