Miyakogusa Predicted Gene

Lj0g3v0131459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0131459.1 tr|Q8YZ33|Q8YZ33_NOSS1 Asr0654 protein OS=Nostoc
sp. (strain PCC 7120 / UTEX 2576) GN=asr0654 PE=4
S,66.07,0.00000000000001,DUF3252,Protein of unknown function
DUF3252,CUFF.7988.1
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23890.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   251   4e-67

>AT4G23890.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF3252
           (InterPro:IPR021659); Has 287 Blast hits to 287 proteins
           in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12;
           Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes -
           111 (source: NCBI BLink). | chr4:12420593-12421345
           REVERSE LENGTH=250
          Length = 250

 Score =  251 bits (640), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 137/242 (56%), Positives = 178/242 (73%), Gaps = 13/242 (5%)

Query: 2   SSFTALHSLHGSLLRSQFLGQDSLTHLNPRSKIHIKPSHKF----VQPCAKFNLVQIMGG 57
           +S   + ++   + RS+FLGQ        RS +   P  +     V+   KFNL ++MGG
Sbjct: 3   TSSITIPTIRTPIHRSKFLGQTHQFSTVNRS-VFPPPKQQSKLYQVKAMGKFNLWEVMGG 61

Query: 58  RGLCNGEEGLEQELKRQVGADEKPLPPAASDKEQEDSGGS--TTQVAEDGFEKELMGLTG 115
           RGLCNGE+G+E+EL+R +  DE+    A +++ + +S  S  + +V EDGFEKE+MGLTG
Sbjct: 62  RGLCNGEKGIEKELQRNI-EDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTG 120

Query: 116 GFPGGEKGLRKFIEENPPPKPGA-----GSKSLNLTSSVKPKAPELPMLLPGMIAIVKNP 170
           GFPGGEKGL+ FIE+NPPP P       GS +  + +  KPKAP+LP+L+PGMIAIVKN 
Sbjct: 121 GFPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQ 180

Query: 171 NNPFYMYCGIVQRITDGKAGVLFEGGNWDKLITFRLDELERREKGPPMKNPKSCVLEPLL 230
           N+P++MYCGIVQRITDGKAGVLFEGGNWD+LITFRL+ELERREKGPP KNPKSC+LEPL+
Sbjct: 181 NSPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLI 240

Query: 231 EK 232
           E+
Sbjct: 241 EQ 242