Miyakogusa Predicted Gene
- Lj0g3v0131009.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0131009.2 Non Chatacterized Hit- tr|D8ST14|D8ST14_SELML
Putative uncharacterized protein OS=Selaginella
moelle,47.06,4e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.7952.2
(113 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10660.1 | Symbols: | unknown protein; LOCATED IN: endomembr... 138 6e-34
AT1G10660.4 | Symbols: | unknown protein; LOCATED IN: endomembr... 138 6e-34
AT1G10660.3 | Symbols: | unknown protein; LOCATED IN: endomembr... 138 6e-34
AT1G10660.2 | Symbols: | unknown protein; LOCATED IN: endomembr... 138 6e-34
AT5G62960.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 129 3e-31
AT3G27770.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 117 2e-27
AT3G27770.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 117 2e-27
AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 107 2e-24
AT1G70505.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 73 4e-14
>AT1G10660.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 155 Blast hits to 154 proteins in 22 species: Archae
- 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants -
139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr1:3533009-3534781 FORWARD LENGTH=320
Length = 320
Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%), Gaps = 2/102 (1%)
Query: 7 NTLSGAVLLTDSVFWFIIYPIRTNKDYGLDFLIFCMHTINAVFLLGDTSLNCMRFPMFRI 66
T +GAV+LTD VFW IIYP K Y L FL CMH++NAVFLLGDTSLN +RFP+FRI
Sbjct: 191 QTCAGAVVLTDIVFWAIIYPF--TKGYKLSFLDVCMHSLNAVFLLGDTSLNSLRFPLFRI 248
Query: 67 AYFVLWTATFVIFQWIIHACFSIGWPYPFLDLSSKYAPLWYV 108
AYFVLW+ FV +QWIIHA ++ WPY FLDLSS YAPLWY+
Sbjct: 249 AYFVLWSCIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLWYL 290
>AT1G10660.4 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:3533009-3534781 FORWARD
LENGTH=320
Length = 320
Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%), Gaps = 2/102 (1%)
Query: 7 NTLSGAVLLTDSVFWFIIYPIRTNKDYGLDFLIFCMHTINAVFLLGDTSLNCMRFPMFRI 66
T +GAV+LTD VFW IIYP K Y L FL CMH++NAVFLLGDTSLN +RFP+FRI
Sbjct: 191 QTCAGAVVLTDIVFWAIIYPF--TKGYKLSFLDVCMHSLNAVFLLGDTSLNSLRFPLFRI 248
Query: 67 AYFVLWTATFVIFQWIIHACFSIGWPYPFLDLSSKYAPLWYV 108
AYFVLW+ FV +QWIIHA ++ WPY FLDLSS YAPLWY+
Sbjct: 249 AYFVLWSCIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLWYL 290
>AT1G10660.3 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:3533009-3534781 FORWARD
LENGTH=320
Length = 320
Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%), Gaps = 2/102 (1%)
Query: 7 NTLSGAVLLTDSVFWFIIYPIRTNKDYGLDFLIFCMHTINAVFLLGDTSLNCMRFPMFRI 66
T +GAV+LTD VFW IIYP K Y L FL CMH++NAVFLLGDTSLN +RFP+FRI
Sbjct: 191 QTCAGAVVLTDIVFWAIIYPF--TKGYKLSFLDVCMHSLNAVFLLGDTSLNSLRFPLFRI 248
Query: 67 AYFVLWTATFVIFQWIIHACFSIGWPYPFLDLSSKYAPLWYV 108
AYFVLW+ FV +QWIIHA ++ WPY FLDLSS YAPLWY+
Sbjct: 249 AYFVLWSCIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLWYL 290
>AT1G10660.2 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr1:3533009-3534781 FORWARD
LENGTH=320
Length = 320
Score = 138 bits (348), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 80/102 (78%), Gaps = 2/102 (1%)
Query: 7 NTLSGAVLLTDSVFWFIIYPIRTNKDYGLDFLIFCMHTINAVFLLGDTSLNCMRFPMFRI 66
T +GAV+LTD VFW IIYP K Y L FL CMH++NAVFLLGDTSLN +RFP+FRI
Sbjct: 191 QTCAGAVVLTDIVFWAIIYPF--TKGYKLSFLDVCMHSLNAVFLLGDTSLNSLRFPLFRI 248
Query: 67 AYFVLWTATFVIFQWIIHACFSIGWPYPFLDLSSKYAPLWYV 108
AYFVLW+ FV +QWIIHA ++ WPY FLDLSS YAPLWY+
Sbjct: 249 AYFVLWSCIFVAYQWIIHAVKNLWWPYQFLDLSSPYAPLWYL 290
>AT5G62960.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G10660.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:25269444-25271533 FORWARD LENGTH=347
Length = 347
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 73/98 (74%)
Query: 10 SGAVLLTDSVFWFIIYPIRTNKDYGLDFLIFCMHTINAVFLLGDTSLNCMRFPMFRIAYF 69
+GAVLLTD VFWFII P DY L+ L+ MH++NA+FLLGD +LN + FP FRIAYF
Sbjct: 213 AGAVLLTDCVFWFIIVPFLEIHDYSLNVLVINMHSLNAIFLLGDAALNSLSFPCFRIAYF 272
Query: 70 VLWTATFVIFQWIIHACFSIGWPYPFLDLSSKYAPLWY 107
WT +VIFQW +H+ I WPYPFLDLSS YAPLWY
Sbjct: 273 FFWTIAYVIFQWALHSLVHIWWPYPFLDLSSHYAPLWY 310
>AT3G27770.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G62960.1); Has 150 Blast hits to 150 proteins
in 21 species: Archae - 0; Bacteria - 0; Metazoa - 13;
Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink). | chr3:10285818-10287461 REVERSE
LENGTH=272
Length = 272
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 74/99 (74%)
Query: 10 SGAVLLTDSVFWFIIYPIRTNKDYGLDFLIFCMHTINAVFLLGDTSLNCMRFPMFRIAYF 69
+GA +LTDS++W +I+P + +DY + F+ +HT N V LL DT LN ++FP+FR +YF
Sbjct: 149 AGAAVLTDSIYWTVIFPFLSLQDYEMSFMTVNLHTSNLVLLLIDTFLNRLKFPLFRFSYF 208
Query: 70 VLWTATFVIFQWIIHACFSIGWPYPFLDLSSKYAPLWYV 108
+LWT FV+FQWI+H S+GWPYPFL+LS AP+WY+
Sbjct: 209 ILWTGCFVLFQWILHMFISVGWPYPFLNLSLDMAPVWYL 247
>AT3G27770.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62960.1);
Has 158 Blast hits to 157 proteins in 21 species: Archae
- 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants -
141; Viruses - 0; Other Eukaryotes - 4 (source: NCBI
BLink). | chr3:10285818-10287474 REVERSE LENGTH=315
Length = 315
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 74/99 (74%)
Query: 10 SGAVLLTDSVFWFIIYPIRTNKDYGLDFLIFCMHTINAVFLLGDTSLNCMRFPMFRIAYF 69
+GA +LTDS++W +I+P + +DY + F+ +HT N V LL DT LN ++FP+FR +YF
Sbjct: 192 AGAAVLTDSIYWTVIFPFLSLQDYEMSFMTVNLHTSNLVLLLIDTFLNRLKFPLFRFSYF 251
Query: 70 VLWTATFVIFQWIIHACFSIGWPYPFLDLSSKYAPLWYV 108
+LWT FV+FQWI+H S+GWPYPFL+LS AP+WY+
Sbjct: 252 ILWTGCFVLFQWILHMFISVGWPYPFLNLSLDMAPVWYL 290
>AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:19345376-19346864 REVERSE LENGTH=300
Length = 300
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 72/102 (70%)
Query: 7 NTLSGAVLLTDSVFWFIIYPIRTNKDYGLDFLIFCMHTINAVFLLGDTSLNCMRFPMFRI 66
T +GAV+LTD VFW +I P + +GL+ L CMHT NA FLL +T LN + FP FR+
Sbjct: 165 QTSAGAVVLTDIVFWLVIVPFLSTTRFGLNTLTICMHTANAGFLLLETLLNSLPFPWFRM 224
Query: 67 AYFVLWTATFVIFQWIIHACFSIGWPYPFLDLSSKYAPLWYV 108
YFVLW+ +VIFQWIIHAC WPYPFL+L +AP+WY+
Sbjct: 225 GYFVLWSCLYVIFQWIIHACGFTWWPYPFLELDKPWAPIWYL 266
>AT1G70505.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G10660.1); Has 141 Blast hits to 140 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4;
Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr1:26570647-26572463 FORWARD
LENGTH=358
Length = 358
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 7 NTLSGAVLLTDSVFWFIIYPIRTNKDYGLDFLIFCMHTINAVFLLGDTSLNCMRF 61
T +GAVLLTD VFWFIIYP T KD+ LDF I MH++NA+FLLG+T LN + F
Sbjct: 219 QTCAGAVLLTDGVFWFIIYPFLTAKDFNLDFFIVIMHSVNAIFLLGETFLNSLGF 273