Miyakogusa Predicted Gene

Lj0g3v0130859.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0130859.1 tr|Q1XBQ8|Q1XBQ8_SOYBN DNA mismatch repair
protein OS=Glycine max GN=MSH1 PE=2 SV=1,85.91,0,seg,NULL; PREDICTED
PROTEIN,NULL; DNA MISMATCH REPAIR MUTS RELATED PROTEINS,NULL;
MutS_I,DNA mismatc,CUFF.7940.1
         (731 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein ho...  1121   0.0  
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293...    55   2e-07
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c...    55   2e-07
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | c...    54   5e-07

>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein
           homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118
          Length = 1118

 Score = 1121 bits (2900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/730 (73%), Positives = 618/730 (84%), Gaps = 1/730 (0%)

Query: 2   CKKPSTVQLIQRLEYSNLLGLDSNLKNGSLKEGSLNWEMLQFKSKFPRQVLLCRVGEFYE 61
           CKKPST+QLI+RL Y+NLLGLD +L+NGSLK+G+LNWEMLQFKS+FPR+VLLCRVGEFYE
Sbjct: 90  CKKPSTLQLIERLMYTNLLGLDPSLRNGSLKDGNLNWEMLQFKSRFPREVLLCRVGEFYE 149

Query: 62  AIGIDACVLVEYAGLNPFGGLRSDSTPRAGCPVVNLRQTLDDLTNNGYSVCIVEEVQGPA 121
           AIGIDAC+LVEYAGLNPFGGLRSDS P+AGCP++NLRQTLDDLT NGYSVCIVEEVQGP 
Sbjct: 150 AIGIDACILVEYAGLNPFGGLRSDSIPKAGCPIMNLRQTLDDLTRNGYSVCIVEEVQGPT 209

Query: 122 QARSRKRRFISGHAHPGNPYVYGLVGVDHDLDFPEPMPVVGISHSARGYCINMILETMKT 181
            ARSRK RFISGHAHPG+PYVYGLVGVDHDLDFP+PMPVVGIS SARGYC+  I ETMK 
Sbjct: 210 PARSRKGRFISGHAHPGSPYVYGLVGVDHDLDFPDPMPVVGISRSARGYCMISIFETMKA 269

Query: 182 YSLEDCLTEEAVVAKLRTCQYHHLFLHTSLRRNSCGTCNXXXXXXXXXXXXXCNSRHFEW 241
           YSL+D LTEEA+V KLRT + HHLFLH SLR N+ GTC              C+SR+FEW
Sbjct: 270 YSLDDGLTEEALVTKLRTRRCHHLFLHASLRHNASGTCRWGEFGEGGLLWGECSSRNFEW 329

Query: 242 FDGNPVSDLLVKVKELYGLDYEVTFRNTTVSSGNRARPLSLGTSTQIGVIPTDGIPSLLK 301
           F+G+ +S+LL +VK++YGLD EV+FRN  V S NR RPL LGT+TQIG +PT+GIP LLK
Sbjct: 330 FEGDTLSELLSRVKDVYGLDDEVSFRNVNVPSKNRPRPLHLGTATQIGALPTEGIPCLLK 389

Query: 302 VLLPSNCNGLPVLYVRDLLLNPPSYEIASNIQATCKLMSSVTCSIPEFTCVSSAKIVKLL 361
           VLLPS C+GLP LYVRDLLLNPP+Y+IA  IQ TCKLMS+VTCSIPEFTCVSSAK+VKLL
Sbjct: 390 VLLPSTCSGLPSLYVRDLLLNPPAYDIALKIQETCKLMSTVTCSIPEFTCVSSAKLVKLL 449

Query: 362 EWREANHIELCRLKNVLDEVLQMHRTSELNEILKHLIDPTWVATGLEIDFKTLVGGCESA 421
           E REAN+IE CR+KNVLD+VL MHR +EL EILK L+DPTWVATGL+IDF T V  C  A
Sbjct: 450 EQREANYIEFCRIKNVLDDVLHMHRHAELVEILKLLMDPTWVATGLKIDFDTFVNECHWA 509

Query: 422 SGKIGEVISLD-GEKDQRVSSCSIIPNEFFEDMESAWKGRIKTIHMDDVLTEVEKAAEAL 480
           S  IGE+ISLD  E  Q VS C  +PNEFF DMES+W+GR+K IH+++ +T+VEK+AEAL
Sbjct: 510 SDTIGEMISLDENESHQNVSKCDNVPNEFFYDMESSWRGRVKGIHIEEEITQVEKSAEAL 569

Query: 481 HLAVSEDFTPIVSRIKATVAPLGGPKGEISYFREHETVWFKGKRFTPNLWAGSPGEEQIK 540
            LAV+EDF PI+SRIKAT A LGGPKGEI+Y REHE+VWFKGKRFTP++WAG+ GE+QIK
Sbjct: 570 SLAVAEDFHPIISRIKATTASLGGPKGEIAYAREHESVWFKGKRFTPSIWAGTAGEDQIK 629

Query: 541 QLRHALDSKGRKVGEEWFTTPKVDSALARYHEANAKAKARVLELLRGLATELQSSINILV 600
           QL+ ALDSKG+KVGEEWFTTPKV+ AL RYHEA+  AKARVLELLR L+ +LQ+ IN+LV
Sbjct: 630 QLKPALDSKGKKVGEEWFTTPKVEIALVRYHEASENAKARVLELLRELSVKLQTKINVLV 689

Query: 601 FSSTLLVIAKALFAHVSEGRRRKWVFPTLVESKGSEDVKLLYKNHGLNIVGLLPYWFNIA 660
           F+S LLVI+KALF+H  EGRRRKWVFPTLV     E  K L     + + GL PYWF+++
Sbjct: 690 FASMLLVISKALFSHACEGRRRKWVFPTLVGFSLDEGAKPLDGASRMKLTGLSPYWFDVS 749

Query: 661 EGGAVRNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYFDSIML 720
            G AV NTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESA IP+FDSIML
Sbjct: 750 SGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSIML 809

Query: 721 HMKSYDSPAD 730
           HMKSYDSP D
Sbjct: 810 HMKSYDSPVD 819


>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
            FORWARD LENGTH=1321
          Length = 1321

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 658  NIAEGGAVRNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYFDS 717
            N+  GGA     +  S  LLTGPN GGKS+LLR +C A +L   G  VPAE+  +   D 
Sbjct: 1064 NVKIGGA-----EKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDK 1118

Query: 718  IMLHMKSYD 726
            I + M + D
Sbjct: 1119 ICVRMGAKD 1127


>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
            chr4:906079-912930 FORWARD LENGTH=1324
          Length = 1324

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 658  NIAEGGAVRNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESASIPYFDS 717
            N+  GGA     +  S  LLTGPN GGKS+LLR +C A +L   G  VPAE+  +   D 
Sbjct: 1067 NVKIGGA-----EKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDK 1121

Query: 718  IMLHMKSYD 726
            I + M + D
Sbjct: 1122 ICVRMGAKD 1130


>AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 |
           chr3:8912418-8918086 REVERSE LENGTH=1109
          Length = 1109

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 25/195 (12%)

Query: 552 KVGEEWFTT---PKVDSALARYH-----EANAKAKARVLELLRGLATELQSSINILVFSS 603
           K G E F +     +DS    Y      + NA+    ++EL    AT+    I+ +    
Sbjct: 711 KSGLELFLSQFEAAIDSDFPNYQNQDVTDENAETLTILIELFIERATQWSEVIHTISCLD 770

Query: 604 TLLVIAKALFAHVSEGRR-RKWVFPTLVESKGSED----------VKLLYKNHGLNIVGL 652
            L   A A  A +S G   R  +FP   ES+ ++           ++ L+    +   G 
Sbjct: 771 VLRSFAIA--ASLSAGSMARPVIFP---ESEATDQNQKTKGPILKIQGLWHPFAVAADGQ 825

Query: 653 LPYWFNIAEGGAVRNTVDMQSL-FLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESAS 711
           LP   +I  G A R++  +     LLTGPN GGKS+LLR+ C A +    G  VP ES  
Sbjct: 826 LPVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCE 885

Query: 712 IPYFDSIMLHMKSYD 726
           I   D+I   + + D
Sbjct: 886 ISLVDTIFTRLGASD 900