Miyakogusa Predicted Gene
- Lj0g3v0130849.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0130849.1 Non Chatacterized Hit- tr|K0SCL8|K0SCL8_THAOC
Uncharacterized protein OS=Thalassiosira oceanica
PE=4,29.45,1e-18,PREDICTED PROTEIN,NULL; DNA MISMATCH REPAIR MUTS
RELATED PROTEINS,NULL; no description,NULL; P-loop ,CUFF.7939.1
(288 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein ho... 317 4e-87
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c... 66 3e-11
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293... 66 3e-11
AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type... 64 1e-10
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | c... 56 2e-08
AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch re... 52 4e-07
AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type... 50 1e-06
AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type... 50 1e-06
AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 | chr3:6368... 49 4e-06
>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog
1 | chr3:8823229-8829571 REVERSE LENGTH=1118
Length = 1118
Score = 317 bits (813), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 164/289 (56%), Positives = 207/289 (71%), Gaps = 34/289 (11%)
Query: 1 MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
MSE+RSI++ T RSLVL+DEICRGTETAKGTCIAGS++E+LD GCLGIVSTHLHGIF+
Sbjct: 828 MSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCLGIVSTHLHGIFS 887
Query: 61 LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
LPL KN +KAMG E ++GQTKPTWKLTDGVC+ESLAFETAKREG+PE VI+RAE LYL
Sbjct: 888 LPLTAKNITYKAMGAENVEGQTKPTWKLTDGVCRESLAFETAKREGVPESVIQRAEALYL 947
Query: 121 SVYAEKPHSAENFPKQEKHSTYIDVNNFNGTHLHPKKYISGASIEGINLANPI---EVLQ 177
SVYA K SAE + P + I+ ++ + + P+ L+
Sbjct: 948 SVYA-KDASAEV--------------------VKPDQIITSSNNDQ-QIQKPVSSERSLE 985
Query: 178 REVESAITVICQDLIMELQRKKIASELTKIKCFLIGTRERPPPSTIGSSSVYVMLRPDKK 237
+++ AI IC ++E + I+C IG RE PPPST+GSS VYVM RPDK+
Sbjct: 986 KDLAKAIVKICGKKMIEPE---------AIECLSIGARELPPPSTVGSSCVYVMRRPDKR 1036
Query: 238 LYIGETDDLEGRVQAHPSKEGMHDATFLYFLAPGKSLACQIESLLINQL 286
LYIG+TDDLEGR++AH +KEG+ ++FLY + GKS+ACQ+E+LLINQL
Sbjct: 1037 LYIGQTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQL 1085
>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
chr4:906079-912930 FORWARD LENGTH=1324
Length = 1324
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 1 MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIE-TLDRVGCLGIVSTHLHGI- 58
+SE ++T T+ SLV++DE+ RGT T+ G IA S++E +++V C G STH H +
Sbjct: 1143 LSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLS 1202
Query: 59 FALPLNIKNTL-HKAMGT-ECIDGQTKPT--WKLTDGVCKESLAFETAKREGIPEIVIKR 114
N K +L H A E I G + T ++LT G C +S A+ G+P+ V++R
Sbjct: 1203 VDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQR 1262
Query: 115 A 115
A
Sbjct: 1263 A 1263
>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
FORWARD LENGTH=1321
Length = 1321
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 6/121 (4%)
Query: 1 MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIE-TLDRVGCLGIVSTHLHGI- 58
+SE ++T T+ SLV++DE+ RGT T+ G IA S++E +++V C G STH H +
Sbjct: 1140 LSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLS 1199
Query: 59 FALPLNIKNTL-HKAMGT-ECIDGQTKPT--WKLTDGVCKESLAFETAKREGIPEIVIKR 114
N K +L H A E I G + T ++LT G C +S A+ G+P+ V++R
Sbjct: 1200 VDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQR 1259
Query: 115 A 115
A
Sbjct: 1260 A 1260
>AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr5:21948283-21952550 REVERSE LENGTH=796
Length = 796
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 1 MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
+ ++ I++ +T RSLVL+DE+ GT +G + +I+E+ G L ++T HG
Sbjct: 502 LKQISEILSHSTSRSLVLLDEVGAGTNPLEGAALGMAILESFAESGSLLTMATTHHGELK 561
Query: 61 LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRAEDLYL 120
L N+ + E D KPT+K+ GV S A A R G+P +I+ A +LY
Sbjct: 562 -TLKYSNSAFENACMEFDDLNLKPTYKILWGVPGRSNAINIADRLGLPCDIIESARELYG 620
Query: 121 SVYAE 125
S AE
Sbjct: 621 SASAE 625
>AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 |
chr3:8912418-8918086 REVERSE LENGTH=1109
Length = 1109
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 24/157 (15%)
Query: 2 SELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETL-DRVGCLGIVSTHLHGIFA 60
+E S++ T+ SLV++DE+ RGT T G IA S+ L ++V C + +TH H
Sbjct: 914 TETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHYH---- 969
Query: 61 LPLNIKNTLHKAMGTECI---------------DGQTKPTWKLTDGVCKESLAFETAKRE 105
PL + H + ++ + D ++LT+G C ES + A
Sbjct: 970 -PLTKEFASHPRVTSKHMACAFKSRSDYQPRGCDQDLVFLYRLTEGACPESYGLQVALMA 1028
Query: 106 GIPEIVIKRAEDLYLSVYAEKPHSAENFPKQEKHSTY 142
GIP V++ A + A K ENF E S +
Sbjct: 1029 GIPNQVVETASG---AAQAMKRSIGENFKSSELRSEF 1062
>AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair
protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081
Length = 1081
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 1 MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIE-TLDRVGCLGIVSTHLHGIF 59
+SE II + RSLV++DE+ RGT T G IA + ++ L CL + TH I
Sbjct: 877 LSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPEIA 936
Query: 60 ----ALPLNIKN------TLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPE 109
P ++ TL K G+ D T +KL G+C S F+ A+ IP
Sbjct: 937 EISNGFPGSVGTYHVSYLTLQKDKGSYDHDDVTY-LYKLVRGLCSRSFGFKVAQLAQIPP 995
Query: 110 IVIKRAEDLYLSVYAE 125
I+RA + + AE
Sbjct: 996 SCIRRAISMAAKLEAE 1011
>AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173132-24176244 REVERSE LENGTH=857
Length = 857
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 1 MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
+S +R I+ ++ SLVL+DEIC GT+ ++G +A SI++ + + +VSTH +
Sbjct: 463 ISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAVVSTHYGDLSR 522
Query: 61 LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRA 115
L N + AM E +PT+++ G S A AK G + +++ A
Sbjct: 523 LKDNEPRFQNAAM--EFSMETLQPTFRVLWGSTGLSNALRVAKSIGFNKRILENA 575
>AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173047-24176244 REVERSE LENGTH=876
Length = 876
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 1 MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVGCLGIVSTHLHGIFA 60
+S +R I+ ++ SLVL+DEIC GT+ ++G +A SI++ + + +VSTH +
Sbjct: 463 ISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQYIKNRVNVAVVSTHYGDLSR 522
Query: 61 LPLNIKNTLHKAMGTECIDGQTKPTWKLTDGVCKESLAFETAKREGIPEIVIKRA 115
L N + AM E +PT+++ G S A AK G + +++ A
Sbjct: 523 LKDNEPRFQNAAM--EFSMETLQPTFRVLWGSTGLSNALRVAKSIGFNKRILENA 575
>AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 |
chr3:6368151-6372409 REVERSE LENGTH=937
Length = 937
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 1 MSELRSIITGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDRVG-CLGIVSTHLHGIF 59
M E SI+ G + +SL+++DE+ RGT T G +A +I E L +V + +TH H +
Sbjct: 726 MLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELT 785
Query: 60 ALPLNIKNTLHKAMG------TECIDGQTKP---TWKLTDGVCKESLAFETAKREGIPEI 110
AL +G + ID +++ +K+ G C +S A+ PE
Sbjct: 786 ALAQANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFPES 845
Query: 111 VIKRAED 117
V+ A +
Sbjct: 846 VVALARE 852