Miyakogusa Predicted Gene

Lj0g3v0130529.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0130529.1 Non Chatacterized Hit- tr|I3SRU7|I3SRU7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,100,0,no
description,NULL; SMALL NUCLEAR RIBONUCLEOPROTEIN SM,NULL;
LSM,Ribonucleoprotein LSM domain; seg,,CUFF.7914.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02840.1 | Symbols:  | Small nuclear ribonucleoprotein family...   184   9e-48
AT3G07590.2 | Symbols:  | Small nuclear ribonucleoprotein family...   180   2e-46
AT3G07590.1 | Symbols:  | Small nuclear ribonucleoprotein family...   180   2e-46
AT4G02840.2 | Symbols:  | Small nuclear ribonucleoprotein family...   176   2e-45
AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein family...    51   1e-07
AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 | chr1:286...    46   4e-06

>AT4G02840.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr4:1264726-1266253 FORWARD LENGTH=116
          Length = 116

 Score =  184 bits (467), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 92/98 (93%), Positives = 95/98 (96%)

Query: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTIVHGTITGVD+SMNTHLK VKLTLKGKNPVTLDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGGKP 98
          RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG  P
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIP 98


>AT3G07590.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:2423146-2423958 FORWARD LENGTH=114
          Length = 114

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 94/95 (98%)

Query: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKTVK++LKGKNPVTLDHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95


>AT3G07590.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:2423146-2423958 FORWARD LENGTH=114
          Length = 114

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/95 (92%), Positives = 94/95 (98%)

Query: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKTVK++LKGKNPVTLDHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95


>AT4G02840.2 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr4:1264726-1266253 FORWARD LENGTH=126
          Length = 126

 Score =  176 bits (447), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/108 (85%), Positives = 95/108 (87%), Gaps = 10/108 (9%)

Query: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTIT----------GVDISMNTHLKTVKLTLKGK 50
           MKLVRFLMKLNNETVSIELKNGTIVHGTIT          GVD+SMNTHLK VKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 51  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGGKP 98
           NPVTLDHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG  P
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIP 108


>AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr1:7128979-7130371 FORWARD LENGTH=131
          Length = 131

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%)

Query: 4   VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
           V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      L+H+ +RG+
Sbjct: 9   VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68

Query: 64  NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
            +R+ ++PD L    +      R+K K  + G
Sbjct: 69  KVRFMVIPDILKHAPMFKRLDARIKGKSSSLG 100


>AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 |
          chr1:28625957-28627080 FORWARD LENGTH=128
          Length = 128

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query: 4  VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 63
          V+ L + +   VS+E+K+G +  G++   + + N  L+ +  T K      L+H+ +RG+
Sbjct: 9  VKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68

Query: 64 NIRYYILPDSL 74
           +R+ ++PD L
Sbjct: 69 LVRFLVIPDML 79