Miyakogusa Predicted Gene

Lj0g3v0129799.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129799.1 tr|C1FFV7|C1FFV7_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_60644
,25.91,8e-16,seg,NULL; DUF3414,Protein of unknown function
DUF3414,CUFF.7857.1
         (364 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G38760.1 | Symbols:  | Protein of unknown function (DUF3414) ...   412   e-115
AT4G10845.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    50   3e-06

>AT4G38760.1 | Symbols:  | Protein of unknown function (DUF3414) |
           chr4:18085033-18096166 REVERSE LENGTH=1965
          Length = 1965

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/368 (55%), Positives = 263/368 (71%), Gaps = 7/368 (1%)

Query: 1   MADTTTVDASLWWDSFTLLLTDLENSSLSSDLPPILEKKLNDNHAWFVDTLSRFKPPSQK 60
           MA+  +VD+SLWWD F  LLTDLEN+SLS DLP  + KKL +NHAWFV TLS FKPPS+K
Sbjct: 1   MANPNSVDSSLWWDPFDSLLTDLENASLSDDLPQPIAKKLEENHAWFVGTLSMFKPPSEK 60

Query: 61  SKEALNSKNLQIGSHHLTIQPHLRDKALQTSSCLLLDEVQSYILVERXXXXXXXXXXDSM 120
           SKEALNS  ++I  H L I+P L+DKAL+ SS L LDE+QSYILVER          DS+
Sbjct: 61  SKEALNSDLVKIKEHQLVIKPQLKDKALRISSHLNLDEIQSYILVERSMEQEYGTT-DSV 119

Query: 121 APE----FPNMMLIQYYKERQCLLKCIRWIFMHAIYIDPVSEKSTVKEEARKLLHDGLES 176
           A E    F +M+L+QYY +RQCLLKC + I +HA+Y     E+S++KEEA KL+ DGLE 
Sbjct: 120 AQELTQEFIDMILLQYYIQRQCLLKCTKRILIHALYAP--REESSIKEEAVKLISDGLER 177

Query: 177 KLVSFFEGLLSCSYPEQMDIDLFTLWAEETLIEDNLVLDILFLTYYDSFCTCSGEIWKKF 236
           +  S  E LLS  +P+ MD++LFTLWAEETLIEDNL+LDILFL Y +S+C+C+GE W+K 
Sbjct: 178 RQSSVLEDLLSSCFPKNMDVNLFTLWAEETLIEDNLILDILFLIYNESYCSCNGERWRKL 237

Query: 237 AALYKGIIGGDYNLGKLAITTEAQELSYHIKVQXXXXXXXXXXXXXXXQMVHDEIPYRKG 296
            + YKGI+ G YN  KLA++ EAQ  +  +++Q               QMVHD +P+R G
Sbjct: 238 CSFYKGILSGSYNFSKLAVSVEAQHSACRVQIQLLMILIETLDMENLLQMVHDGVPFRSG 297

Query: 297 VFTFSLTDIQEMDALVSTFSVFEMNEAGPLVLAWAVFLYLLLTLPEKDDNNELMEIDHIG 356
              FS+ D+QEMDA +S+ +  E+NEAGPLVLAWAVFL L+ +LP K+++  LM+IDH+ 
Sbjct: 298 TCVFSIVDVQEMDATISSLNTSEVNEAGPLVLAWAVFLCLISSLPGKEESPFLMDIDHVS 357

Query: 357 YVRQAFEA 364
           YV QAFEA
Sbjct: 358 YVHQAFEA 365


>AT4G10845.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion;
           EXPRESSED IN: sperm cell, male gametophyte, pollen tube;
           EXPRESSED DURING: L mature pollen stage; BEST
           Arabidopsis thaliana protein match is: Protein of
           unknown function (DUF3414) (TAIR:AT4G38760.1); Has 6
           Blast hits to 6 proteins in 3 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr4:6662595-6663461 FORWARD LENGTH=105
          Length = 105

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 10/54 (18%)

Query: 188 CSYPEQMDIDLFTLWAEETLIEDNLVLDILFLTYYDSFCTCSGEIWKKFAALYK 241
           C     +D++LFT W EETLIED  +          SFCTC+GE W++  + YK
Sbjct: 36  CDSSFLLDVNLFTFWTEETLIEDKSL----------SFCTCNGERWRRLFSFYK 79