Miyakogusa Predicted Gene

Lj0g3v0129669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129669.1 NODE_50409_length_158_cov_107.607597.path3.1
         (55 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15210.1 | Symbols: PDR7, ATPDR7 | pleiotropic drug resistanc...    52   9e-08
AT1G59870.1 | Symbols: PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 | AB...    52   1e-07
AT3G16340.2 | Symbols: PDR1 | pleiotropic drug resistance 1 | ch...    50   3e-07
AT3G16340.1 | Symbols: ATPDR1, PDR1 | pleiotropic drug resistanc...    50   3e-07
AT1G15520.1 | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiot...    47   2e-06
AT2G26910.1 | Symbols: PDR4, ATPDR4 | pleiotropic drug resistanc...    47   2e-06

>AT1G15210.1 | Symbols: PDR7, ATPDR7 | pleiotropic drug resistance 7 |
            chr1:5231552-5236573 REVERSE LENGTH=1442
          Length = 1442

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 1    MYAPLPYAIAQVFTELPYVFAQTTFYSLIVYAMVS 35
            MY+ +PYAI+QV  ELPYV  QTT+YSLI+Y+MV 
Sbjct: 1257 MYSAIPYAISQVTCELPYVLIQTTYYSLIIYSMVG 1291


>AT1G59870.1 | Symbols: PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 | ABC-2
            and Plant PDR ABC-type transporter family protein |
            chr1:22034661-22039844 FORWARD LENGTH=1469
          Length = 1469

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 28/35 (80%)

Query: 1    MYAPLPYAIAQVFTELPYVFAQTTFYSLIVYAMVS 35
            MY+ +PYAI+QV  ELPYV  QT +YSLIVYAMV 
Sbjct: 1284 MYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVG 1318


>AT3G16340.2 | Symbols: PDR1 | pleiotropic drug resistance 1 |
            chr3:5539897-5546263 FORWARD LENGTH=1411
          Length = 1411

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 29/34 (85%)

Query: 1    MYAPLPYAIAQVFTELPYVFAQTTFYSLIVYAMV 34
            MY+ LPYA+AQV  E+PYV  QTT+Y+LI+YAM+
Sbjct: 1226 MYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMM 1259


>AT3G16340.1 | Symbols: ATPDR1, PDR1 | pleiotropic drug resistance 1 |
            chr3:5539897-5546263 FORWARD LENGTH=1416
          Length = 1416

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 29/34 (85%)

Query: 1    MYAPLPYAIAQVFTELPYVFAQTTFYSLIVYAMV 34
            MY+ LPYA+AQV  E+PYV  QTT+Y+LI+YAM+
Sbjct: 1231 MYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMM 1264


>AT1G15520.1 | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic
            drug resistance 12 | chr1:5331993-5338175 REVERSE
            LENGTH=1423
          Length = 1423

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query: 1    MYAPLPYAIAQVFTELPYVFAQTTFYSLIVYAMVS 35
            MY+ +PYA AQVF E+PYV  Q   Y LIVYAM+ 
Sbjct: 1242 MYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIG 1276


>AT2G26910.1 | Symbols: PDR4, ATPDR4 | pleiotropic drug resistance 4 |
            chr2:11481623-11487874 FORWARD LENGTH=1420
          Length = 1420

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 1    MYAPLPYAIAQVFTELPYVFAQTTFYSLIVYAMVS 35
            MY+ LP+A AQVF E PYV AQ+T YS I YAM +
Sbjct: 1235 MYSALPFAFAQVFIEFPYVLAQSTIYSTIFYAMAA 1269