Miyakogusa Predicted Gene

Lj0g3v0129619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129619.1 Non Chatacterized Hit- tr|I1MQB5|I1MQB5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.54732
PE,96.33,0,Ribosomal_S3_C,Ribosomal protein S3, C-terminal; no
description,Ribosomal protein S3, C-terminal; RI,CUFF.7852.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35530.1 | Symbols:  | Ribosomal protein S3 family protein | ...   177   1e-45
AT3G53870.1 | Symbols:  | Ribosomal protein S3 family protein | ...   175   7e-45
AT2G31610.1 | Symbols:  | Ribosomal protein S3 family protein | ...   170   2e-43

>AT5G35530.1 | Symbols:  | Ribosomal protein S3 family protein |
           chr5:13710355-13712192 REVERSE LENGTH=248
          Length = 248

 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 94/109 (86%), Gaps = 1/109 (0%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVRHVLLRQGVLG+KV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIEVPVA 108
           KIMLDWDPKGKQGP TPLPD+V IHTPKE++ Y  P  V+     VP A
Sbjct: 187 KIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVPEA 235


>AT3G53870.1 | Symbols:  | Ribosomal protein S3 family protein |
           chr3:19951547-19952782 FORWARD LENGTH=249
          Length = 249

 Score =  175 bits (443), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 86/91 (94%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YIDSAVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEE 91
           K+MLDWDPKG  GPKTPLPD+V IH+PKEEE
Sbjct: 187 KVMLDWDPKGISGPKTPLPDVVIIHSPKEEE 217


>AT2G31610.1 | Symbols:  | Ribosomal protein S3 family protein |
           chr2:13450384-13451669 FORWARD LENGTH=250
          Length = 250

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/93 (84%), Positives = 85/93 (91%)

Query: 1   MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKV 60
           MESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVRHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKV 186

Query: 61  KIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY 93
           KIMLDWDP GK GPKTPLPD+V IH PK++  Y
Sbjct: 187 KIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVY 219