Miyakogusa Predicted Gene

Lj0g3v0129599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129599.1 Non Chatacterized Hit- tr|B8B1I0|B8B1I0_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,46.4,7e-19,seg,NULL,CUFF.7844.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |...   120   3e-28
AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |...   120   3e-28
AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |...   115   9e-27
AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |...   115   1e-26
AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |...   113   2e-26
AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |...    95   1e-20
AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    92   8e-20
AT5G02840.2 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    91   2e-19
AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-6512...    91   2e-19
AT3G09600.2 | Symbols:  | Homeodomain-like superfamily protein |...    87   3e-18

>AT5G52660.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:21359423-21362037 REVERSE LENGTH=330
          Length = 330

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 70/86 (81%)

Query: 23  TPPARPSSEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDSTNHLQRLKQMDPINVETAL 82
           TP  R + +  +  N    ++V+PDFAQVY FIGSVFDP ++NHLQ+LK+MDPI+VET L
Sbjct: 220 TPRPRSNRDARDHGNVGHSLRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVL 279

Query: 83  LLMKNLSINLRSPEFEDHKRLISSYD 108
           LLM+NLSINL SP+FEDH+RL+SSYD
Sbjct: 280 LLMRNLSINLSSPDFEDHRRLLSSYD 305


>AT5G52660.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:21359423-21362037 REVERSE LENGTH=331
          Length = 331

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 70/86 (81%)

Query: 23  TPPARPSSEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDSTNHLQRLKQMDPINVETAL 82
           TP  R + +  +  N    ++V+PDFAQVY FIGSVFDP ++NHLQ+LK+MDPI+VET L
Sbjct: 221 TPRPRSNRDARDHGNVGHSLRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVL 280

Query: 83  LLMKNLSINLRSPEFEDHKRLISSYD 108
           LLM+NLSINL SP+FEDH+RL+SSYD
Sbjct: 281 LLMRNLSINLSSPDFEDHRRLLSSYD 306


>AT4G01280.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:535288-536854 FORWARD LENGTH=303
          Length = 303

 Score =  115 bits (287), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 75/105 (71%), Gaps = 3/105 (2%)

Query: 5   GAGQAVPLNSCYSSSNESTPPARPSSEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDST 64
            A   +P N C     E T   R  ++  N+ +  +P +VMP+FA+VY FIGSVFDP+++
Sbjct: 198 SATAPLPNNRC---RQEDTERVRAVTKPNNEESCEKPHRVMPNFAEVYSFIGSVFDPNTS 254

Query: 65  NHLQRLKQMDPINVETALLLMKNLSINLRSPEFEDHKRLISSYDA 109
            HLQRLKQMDPIN+ET LLLM+NLS+NL SPEF + +RLISSY A
Sbjct: 255 GHLQRLKQMDPINMETVLLLMQNLSVNLTSPEFAEQRRLISSYSA 299


>AT4G01280.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:535288-536854 FORWARD LENGTH=302
          Length = 302

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 75/105 (71%), Gaps = 3/105 (2%)

Query: 5   GAGQAVPLNSCYSSSNESTPPARPSSEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDST 64
            A   +P N C     E T   R  ++  N+ +  +P +VMP+FA+VY FIGSVFDP+++
Sbjct: 197 SATAPLPNNRC---RQEDTERVRAVTKPNNEESCEKPHRVMPNFAEVYSFIGSVFDPNTS 253

Query: 65  NHLQRLKQMDPINVETALLLMKNLSINLRSPEFEDHKRLISSYDA 109
            HLQRLKQMDPIN+ET LLLM+NLS+NL SPEF + +RLISSY A
Sbjct: 254 GHLQRLKQMDPINMETVLLLMQNLSVNLTSPEFAEQRRLISSYSA 298


>AT1G01520.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr1:190596-192139 FORWARD LENGTH=287
          Length = 287

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 75/101 (74%)

Query: 9   AVPLNSCYSSSNESTPPARPSSEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDSTNHLQ 68
            V  N C +SS+      R  +E  +Q +  +P +V P+FA+VY FIGSVFDP +T H++
Sbjct: 186 GVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKTTGHVK 245

Query: 69  RLKQMDPINVETALLLMKNLSINLRSPEFEDHKRLISSYDA 109
           RLK+MDPIN+ET LLLMKNLS+NL SPEF++ ++LISSY+A
Sbjct: 246 RLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNA 286


>AT3G09600.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:2946459-2948270 FORWARD LENGTH=298
          Length = 298

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 60/79 (75%)

Query: 30  SEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDSTNHLQRLKQMDPINVETALLLMKNLS 89
           SE + +  Q   +  +PDFA+VY FIGSVFDP++  H+++LK+MDPIN ET LLLM+NL+
Sbjct: 198 SEIVRKAKQPPVLHGVPDFAEVYNFIGSVFDPETRGHVEKLKEMDPINFETVLLLMRNLT 257

Query: 90  INLRSPEFEDHKRLISSYD 108
           +NL +P+ E  ++++ SYD
Sbjct: 258 VNLSNPDLESTRKVLLSYD 276


>AT5G02840.3 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651204
           FORWARD LENGTH=283
          Length = 283

 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 59/77 (76%)

Query: 30  SEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDSTNHLQRLKQMDPINVETALLLMKNLS 89
           S+G+    Q   +  +PDFA+VY FIGSVFDPDS   +++LK+MDPIN ET LLLM+NL+
Sbjct: 207 SKGLRLAKQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLT 266

Query: 90  INLRSPEFEDHKRLISS 106
           +NL +P+FE  ++++++
Sbjct: 267 VNLSNPDFEPTRKVMNT 283


>AT5G02840.2 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651212
           FORWARD LENGTH=293
          Length = 293

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query: 30  SEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDSTNHLQRLKQMDPINVETALLLMKNLS 89
           S+G+    Q   +  +PDFA+VY FIGSVFDPDS   +++LK+MDPIN ET LLLM+NL+
Sbjct: 207 SKGLRLAKQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLT 266

Query: 90  INLRSPEFE 98
           +NL +P+FE
Sbjct: 267 VNLSNPDFE 275


>AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648794-651212
           FORWARD LENGTH=293
          Length = 293

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 53/69 (76%)

Query: 30  SEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDSTNHLQRLKQMDPINVETALLLMKNLS 89
           S+G+    Q   +  +PDFA+VY FIGSVFDPDS   +++LK+MDPIN ET LLLM+NL+
Sbjct: 207 SKGLRLAKQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLT 266

Query: 90  INLRSPEFE 98
           +NL +P+FE
Sbjct: 267 VNLSNPDFE 275


>AT3G09600.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:2946459-2948200 FORWARD LENGTH=282
          Length = 282

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 53/69 (76%)

Query: 30  SEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDSTNHLQRLKQMDPINVETALLLMKNLS 89
           SE + +  Q   +  +PDFA+VY FIGSVFDP++  H+++LK+MDPIN ET LLLM+NL+
Sbjct: 198 SEIVRKAKQPPVLHGVPDFAEVYNFIGSVFDPETRGHVEKLKEMDPINFETVLLLMRNLT 257

Query: 90  INLRSPEFE 98
           +NL +P+ E
Sbjct: 258 VNLSNPDLE 266