Miyakogusa Predicted Gene

Lj0g3v0129439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129439.1 Non Chatacterized Hit- tr|Q01C82|Q01C82_OSTTA
3'-5' exonuclease, putative (ISS) OS=Ostreococcus taur,32.21,2e-18,no
description,NULL; 3-5 EXONUCLEASE,NULL; DNA_pol_A_exo1,3'-5'
exonuclease domain; 3'-5' exonucleas,CUFF.7831.1
         (568 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56310.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   590   e-169
AT4G13870.1 | Symbols: WRNEXO, ATWRNEXO, WEX, ATWEX | Werner syn...    84   2e-16
AT4G13870.2 | Symbols: WRNEXO | Werner syndrome-like exonuclease...    80   5e-15
AT5G24340.1 | Symbols:  | 3'-5' exonuclease domain-containing pr...    79   9e-15

>AT1G56310.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:21082863-21085564
           FORWARD LENGTH=589
          Length = 589

 Score =  590 bits (1522), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 306/560 (54%), Positives = 403/560 (71%), Gaps = 13/560 (2%)

Query: 1   MGSEENVAETWNEEDSACKAWTLCKHTFNNLAHVSPVVFLFLVKQCYFYGTCKAGAKFRA 60
           MG +   A+     D   +A T+C H F++L +VSPVVFL+L+K+CY +G+ KA  KF+A
Sbjct: 1   MGLDSKEADLEVIRDEKSEANTVCLHAFSDLTYVSPVVFLYLLKECYKHGSLKATKKFQA 60

Query: 61  LQDQICLVLHNDPKPGPATFIVQCLYVSPLFEDNNSQGFTHLLVSALRHFLK---RSTTS 117
           LQ Q+  VL N P+PGPATFI+ CL + PLF     +GF+HL++SALR F K     T+ 
Sbjct: 61  LQYQVHRVLANKPQPGPATFIINCLTLLPLF-GVYGEGFSHLVISALRRFFKTVSEPTSE 119

Query: 118 EDSLEMNYSAARLLLDIIRGQVHHDDKIVIKLLEMFDIELTNMEKAMC--QIEEKDDLSC 175
           ED       AA+  L  + G + +D+K+++  L +FD+ LT++++A+   ++ ++   +C
Sbjct: 120 EDICLARKLAAQFFLATVGGSLTYDEKVMVHTLRVFDVRLTSIDEALSISEVWQRYGFAC 179

Query: 176 GMAKEFVEQYIFKLVESKLYMSAVTLIESLSIRHYGQSFLLDMIKNNQFKPAEKWATFMG 235
           G A  F+EQYI  L++SK +M+AVTL+E  S R  G++FL  M+++  F+ AE+WATFMG
Sbjct: 180 GNA--FLEQYISDLIKSKSFMTAVTLLEHFSFRFPGETFLQQMVEDKNFQAAERWATFMG 237

Query: 236 KPMLSMLIEELLERNMLKNAYEIIKENNLNQDFPDVYKKCKERTLKSLAEKGCWDVAEER 295
           +P L +L++E   RNMLK AY II +N L  DFP++Y KCKE  LK LAEK CWDVAE +
Sbjct: 238 RPSLCILVQEYGSRNMLKQAYNIINKNYLQHDFPELYHKCKESALKVLAEKACWDVAEIK 297

Query: 296 TNNDRQLMEYLVYLAMEAGYKEKVDELCDRYSLQNFWDIKVPETSILQGRYLHLDELMVE 355
           T  DRQL++YLVYLA+EAGY EKVDELCDRYSLQ     +  E + ++  +L L++L VE
Sbjct: 298 TKGDRQLLKYLVYLAVEAGYLEKVDELCDRYSLQGLPKAREAEVAFVEKSFLRLNDLAVE 357

Query: 356 DIIWVDEVEGLIDATCHIEGVKIVGVDCEWKPNYVKGSKPNKVSIMQIATEKMAFIFDLI 415
           D++WVDEV  L  AT  +EG ++VG+DCEWKPNY+KGSK NKVSIMQI ++   FI DLI
Sbjct: 358 DVVWVDEVNELRKATSFLEGCRVVGIDCEWKPNYIKGSKQNKVSIMQIGSDTKIFILDLI 417

Query: 416 KLHREVPDSLDDCLTRILLSSRILKLGYNFQCDIKQLASSYGELKCFKNYEMLLDIQNVF 475
           KL+ +  + LD+CL+ IL S   LKLGYNFQCDIKQLA SYG+LKCF+ Y+MLLDIQNVF
Sbjct: 418 KLYNDASEILDNCLSHILQSKSTLKLGYNFQCDIKQLALSYGDLKCFERYDMLLDIQNVF 477

Query: 476 KEPRGGLAGLTEKILGARLNKTRRNSNWEQRPLTENQLEYAALDAVVLIHIFRHLPDQ-G 534
            EP GGLAGLT+KILG  LNKTRRNS+WEQRPL++NQLEYAALDA VLIHIFRH+ D   
Sbjct: 478 NEPFGGLAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFRHVRDHPP 537

Query: 535 HDKFG----WKSCIMSHSEN 550
           HD       WKS I+SH E+
Sbjct: 538 HDSSSETTQWKSHIVSHMES 557


>AT4G13870.1 | Symbols: WRNEXO, ATWRNEXO, WEX, ATWEX | Werner
           syndrome-like exonuclease | chr4:8023563-8025542 REVERSE
           LENGTH=285
          Length = 285

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 19/166 (11%)

Query: 375 GVKIVGVDCEWKPNYVKGSKPNKVSIMQIATEK----MAFIFDLIKLHREVPDSLDDCLT 430
           G+  VG+D EW+P++ KG  P KV+ +QI  +     +  IF     H  +P SL     
Sbjct: 126 GIAFVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIF-----HSGIPQSLQ---- 176

Query: 431 RILLSSRILKLGYNFQCDIKQLASSYGELKCFKNYEMLLDIQN--VFKEPRGGLAGLTEK 488
            ++  S ++K+G     D  +L   YG     K+ E L D+ N  +  + + GLA LTE 
Sbjct: 177 HLIEDSTLVKVGIGIDGDSVKLFHDYG--VSIKDVEDLSDLANQKIGGDKKWGLASLTET 234

Query: 489 ILGARLNKTRRN--SNWEQRPLTENQLEYAALDAVVLIHIFRHLPD 532
           ++   L K  R    NWE  PL++ QL+YAA DA    H+++ LPD
Sbjct: 235 LVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKDLPD 280


>AT4G13870.2 | Symbols: WRNEXO | Werner syndrome-like exonuclease |
           chr4:8023563-8025542 REVERSE LENGTH=288
          Length = 288

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 19/166 (11%)

Query: 375 GVKIVGVDCEWKPNYVKGSKPNKVSIMQIATEK----MAFIFDLIKLHREVPDSLDDCLT 430
           G+  VG+D EW+P++ KG  P KV+ +QI  +     +  IF     H  +P SL     
Sbjct: 126 GIAFVGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIF-----HSGIPQSLQ---- 176

Query: 431 RILLSSRILKLGYNFQCDIKQLASSYGELKCFKNYEMLLDIQN--VFKEPRGGLAGLTEK 488
            ++  S ++K+G     D  +L   YG     K+ E L D+ N  +  + + GLA LTE 
Sbjct: 177 HLIEDSTLVKVGIGIDGDSVKLFHDYG--VSIKDVEDLSDLANQKIGGDKKWGLASLTET 234

Query: 489 ILGARLNKTRRN--SNWEQRPLTENQLEYAALDAVVLIHIFRHLPD 532
           ++   L K  R    NWE  PL++ QL+YAA DA    H+++ L D
Sbjct: 235 LVCKELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKD 280


>AT5G24340.1 | Symbols:  | 3'-5' exonuclease domain-containing
           protein | chr5:8297328-8300156 FORWARD LENGTH=505
          Length = 505

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 25/172 (14%)

Query: 378 IVGVDCEWKPNYVKGSKPNKVSIMQIATE-------KMAFIFDLIKLHREVPDSLDDCLT 430
           I+ +D EWKP +   S    V+++Q+A            F+ DL  +H  +P S+ + L 
Sbjct: 30  IIALDAEWKPQHSNTSSFPTVTLLQVACRLSHATDVSDVFLIDLSSIH--LP-SVWELLN 86

Query: 431 RILLSSRILKLGYNFQCDIKQLASSYGELKC---FKNYEMLLDIQNVF----------KE 477
            + +S  +LKLG+ F+ D+  L+S++ +  C   F+  +  LDI +++          K 
Sbjct: 87  DMFVSPDVLKLGFRFKQDLVYLSSTFTQHGCEGGFQEVKQYLDITSIYNYLQHKRFGRKA 146

Query: 478 PRG--GLAGLTEKILGARLNKTRRNSNWEQRPLTENQLEYAALDAVVLIHIF 527
           P+    LA + +++L   L+K  + S+W  RPLTE Q  YAA DA  L+ IF
Sbjct: 147 PKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIF 198