Miyakogusa Predicted Gene

Lj0g3v0129409.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129409.1 Non Chatacterized Hit- tr|I1H2V2|I1H2V2_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,38.42,0.000000000004,seg,NULL,CUFF.7829.1
         (278 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18950.1 | Symbols:  | DDT domain superfamily | chr1:6546539-...    79   3e-15

>AT1G18950.1 | Symbols:  | DDT domain superfamily |
           chr1:6546539-6551549 FORWARD LENGTH=750
          Length = 750

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 106 DSDKPRKIKQLPGRTRREAKRRS-VGEIQSSLRRSKRATRNRIDYRQXXXXXXXXXXXXX 164
           DSD+PR+ K++P   RRE K RS   + +  LRRSKRATR  IDY+Q             
Sbjct: 583 DSDEPRRAKKMP---RRETKLRSRSNDFRPGLRRSKRATR--IDYQQYEFSDSDKEATGL 637

Query: 165 XXXXHASE-DHRSHPSENGEYMMXXXXXXXXXXXXXXMKVTEPVSHPAVGENEDPAVG-E 222
                  E D  S  + NG++ M               K  E      V +N D   G E
Sbjct: 638 AKRKRFVEPDEPSDETGNGDFTMGSQDSEENANDPE-TKSGEEEEPRDVNDNADTTNGKE 696

Query: 223 NEQNHDPPPIKSSSPGQEEAEGMT-KRRFLDLNELAPSSGFDDGPNTATKDEGNDD 277
           N Q +      + +  QEE EG+  KRR+LDLNELAP SGFDDGP+T  KD+   D
Sbjct: 697 NNQLNK----SNGTTDQEEVEGVVGKRRYLDLNELAPVSGFDDGPSTVLKDDDKTD 748