Miyakogusa Predicted Gene

Lj0g3v0129049.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0129049.1 tr|F6UJ99|F6UJ99_MOUSE Symplekin (Fragment)
OS=Mus musculus GN=Sympk PE=4 SV=1,50,2e-19,Symplekin_C,Symplekin
C-terminal; SYMPLEKIN,NULL; FAMILY NOT NAMED,NULL,CUFF.7795.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01400.1 | Symbols: ESP4 | HEAT repeat-containing protein | c...   158   1e-39
AT1G27595.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Symplekin ...   136   5e-33

>AT5G01400.1 | Symbols: ESP4 | HEAT repeat-containing protein |
            chr5:162803-171072 REVERSE LENGTH=1467
          Length = 1467

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 95/118 (80%), Gaps = 3/118 (2%)

Query: 1    MRTVLQAIGAFPTLVDFIMEILSRLVKKQIWKYPKLWVGFLKCVQLTKPQSLGVLLQLPI 60
            MRTVLQAIGAFP L DFI+EILSRLV KQIWKYPKLWVGFLKC Q T+PQS  VLLQLP 
Sbjct: 1143 MRTVLQAIGAFPALSDFILEILSRLVSKQIWKYPKLWVGFLKCTQTTQPQSYKVLLQLPP 1202

Query: 61   AQLENALNRIAALKAPLIAHATQPEVQSTLPRSVLVLLGIVSDAQISNQAQTSQTQTD 118
             QL NAL +I AL+APL AHA+QPE+QS+LPRS L +LG+V D+Q     QTSQ Q +
Sbjct: 1203 LQLGNALTKIPALRAPLTAHASQPEIQSSLPRSTLAVLGLVPDSQ---GTQTSQVQAN 1257


>AT1G27595.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Symplekin
           tight junction protein C-terminal (InterPro:IPR022075);
           BEST Arabidopsis thaliana protein match is: HEAT
           repeat-containing protein (TAIR:AT5G01400.1); Has 593
           Blast hits to 297 proteins in 111 species: Archae - 0;
           Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57;
           Viruses - 0; Other Eukaryotes - 345 (source: NCBI
           BLink). | chr1:9596475-9602917 FORWARD LENGTH=961
          Length = 961

 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 88/124 (70%), Gaps = 10/124 (8%)

Query: 1   MRTVLQAIGAFPTLVDFIMEILSRLVKKQIWKYPKLWVGFLKCVQLTKPQSLGVLLQLPI 60
           MRTV+QAI AFPTLVDF+MEILS+LV+KQIW+ PKLW GFLKCV  TKP S  VLL+LP+
Sbjct: 837 MRTVIQAIDAFPTLVDFVMEILSKLVRKQIWRLPKLWPGFLKCVSQTKPHSFPVLLELPV 896

Query: 61  AQLENALNRIAALKAPLIAHATQPEVQSTLPRSVLVLLGIVSDAQISNQAQTSQTQ---T 117
            QLE+ + +   L+  L A+A QP ++S+LP S L +LG+       +  Q S++Q   +
Sbjct: 897 PQLESIMKKFPDLRPSLTAYANQPTIRSSLPNSALSVLGL-------DNGQDSRSQMHPS 949

Query: 118 DETS 121
           D TS
Sbjct: 950 DATS 953