Miyakogusa Predicted Gene

Lj0g3v0128759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128759.1 tr|A9S5H1|A9S5H1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162953,27.75,2e-16, ,CUFF.7784.1
         (305 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48720.2 | Symbols: XRI, XRI1 | x-ray induced transcript 1 | ...   265   4e-71
AT5G48720.1 | Symbols: XRI, XRI1 | x-ray induced transcript 1 | ...   249   1e-66
AT2G01990.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    65   4e-11
AT1G14630.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    62   7e-10

>AT5G48720.2 | Symbols: XRI, XRI1 | x-ray induced transcript 1 |
           chr5:19759233-19761621 FORWARD LENGTH=300
          Length = 300

 Score =  265 bits (676), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 147/309 (47%), Positives = 199/309 (64%), Gaps = 13/309 (4%)

Query: 1   MDFNNNDKEP-WNWHGEGYTLQETSNF-EISEELWNDVPQNEEDLSYMFDDETTPVKAVG 58
           MD+ ++D+   WNW  + Y  Q  S+F ++ +    +V  N+ED SYMFDDE TPVKA  
Sbjct: 1   MDYGDDDRSSSWNWQVDNYNHQPQSHFSDVPDCTMTEVTLNQEDHSYMFDDENTPVKACS 60

Query: 59  DLAYNGDSNNVPKELEECRET-SQVKRRRMLQFNSQDRDHSLSKEEMTAAYLKNGKEDAM 117
           +L Y+  + +  +++E   ET S +KRRRMLQF  Q      S E  +A    + ++D  
Sbjct: 61  ELGYHVTTEDTNRKMEVHSETRSALKRRRMLQFEDQPETSLFSSESFSAILKSSARDDTF 120

Query: 118 KDIFPEVSPWVSGASSECALGNASASGYDDLE-STEGWLAEYFNDTDMQLSPDDLNFTGA 176
            ++ PE S  + G S      +ASAS ++ L+   E W A+  ND +  + PDDLNF G+
Sbjct: 121 DELLPEGSQLIEGFSE-----DASASSFEGLDLYAEEWYADCLNDAETPMLPDDLNF-GS 174

Query: 177 DDVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKNIIFKGRKSFIRTPTKLASTVAYPFAF 236
            DV +DI+E  ++PP  E   VQ+   VTR+  N+IFKGRKSF R  +KL S++ YPFAF
Sbjct: 175 PDVQVDISEYLNVPPETETREVQR--PVTRSSPNVIFKGRKSFSRPVSKLPSSIIYPFAF 232

Query: 237 IKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSAFSGKPVVGKTKIRTEGGKG 296
           IKP G HG +TLK+INQ+IR  PP+K K + E+P+    SAFSGKPVVGKTKIRTEGGKG
Sbjct: 233 IKPCGVHGGMTLKDINQKIRN-PPAKPKAHIEEPAVIQTSAFSGKPVVGKTKIRTEGGKG 291

Query: 297 SITIMRTKG 305
           SITIMRT+G
Sbjct: 292 SITIMRTRG 300


>AT5G48720.1 | Symbols: XRI, XRI1 | x-ray induced transcript 1 |
           chr5:19760038-19761621 FORWARD LENGTH=266
          Length = 266

 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/275 (49%), Positives = 180/275 (65%), Gaps = 11/275 (4%)

Query: 33  WNDVPQNEEDLSYMFDDETTPVKAVGDLAYNGDSNNVPKELEECRET-SQVKRRRMLQFN 91
             +V  N+ED SYMFDDE TPVKA  +L Y+  + +  +++E   ET S +KRRRMLQF 
Sbjct: 1   MTEVTLNQEDHSYMFDDENTPVKACSELGYHVTTEDTNRKMEVHSETRSALKRRRMLQFE 60

Query: 92  SQDRDHSLSKEEMTAAYLKNGKEDAMKDIFPEVSPWVSGASSECALGNASASGYDDLE-S 150
            Q      S E  +A    + ++D   ++ PE S  + G S      +ASAS ++ L+  
Sbjct: 61  DQPETSLFSSESFSAILKSSARDDTFDELLPEGSQLIEGFSE-----DASASSFEGLDLY 115

Query: 151 TEGWLAEYFNDTDMQLSPDDLNFTGADDVHIDIAELSDIPPSQEQHMVQKRVTVTRTPKN 210
            E W A+  ND +  + PDDLNF G+ DV +DI+E  ++PP  E   VQ+   VTR+  N
Sbjct: 116 AEEWYADCLNDAETPMLPDDLNF-GSPDVQVDISEYLNVPPETETREVQR--PVTRSSPN 172

Query: 211 IIFKGRKSFIRTPTKLASTVAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDP 270
           +IFKGRKSF R  +KL S++ YPFAFIKP G HG +TLK+INQ+IR  PP+K K + E+P
Sbjct: 173 VIFKGRKSFSRPVSKLPSSIIYPFAFIKPCGVHGGMTLKDINQKIRN-PPAKPKAHIEEP 231

Query: 271 SAYPKSAFSGKPVVGKTKIRTEGGKGSITIMRTKG 305
           +    SAFSGKPVVGKTKIRTEGGKGSITIMRT+G
Sbjct: 232 AVIQTSAFSGKPVVGKTKIRTEGGKGSITIMRTRG 266


>AT2G01990.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins
           in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr2:465197-466497 REVERSE
           LENGTH=213
          Length = 213

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 6/86 (6%)

Query: 225 KLASTVAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSA-----FS 279
           +L + + YPF  +KP G   DVTL +IN+RI   P    +    D ++ P  +      S
Sbjct: 129 RLITKLVYPFGLVKPGGRENDVTLNDINERILMAPSRPIRHPVGDFASRPCVSGRGPGLS 188

Query: 280 GKPVVGKTKIRTEGGKGSITIMRTKG 305
           GK VV  TKI+T+ G+G+ITI+RTKG
Sbjct: 189 GKAVVALTKIQTQ-GRGTITIIRTKG 213


>AT1G14630.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G01990.1); Has 125 Blast hits to 123 proteins
           in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr1:5019995-5021445 FORWARD
           LENGTH=226
          Length = 226

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 6/81 (7%)

Query: 230 VAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQNSEDPSAYPKSA-----FSGKPVV 284
           V YPF  +KP G   D+TL +IN+RI  P     +    D +  P  +      SGK VV
Sbjct: 147 VVYPFGVVKPGGREEDITLNDINKRILMPSARPVRHPVGDFACRPCVSADGPGLSGKAVV 206

Query: 285 GKTKIRTEGGKGSITIMRTKG 305
             TKI+T  G+G+ITI+RTKG
Sbjct: 207 AFTKIQTL-GRGTITIIRTKG 226